Wall clock time and date at job start Tue Mar 31 2020 05:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37906 * 119.92797 * 2 1 4 4 C 1.39661 * 119.85193 * 179.97438 * 3 2 1 5 5 C 1.47687 * 120.13471 * 179.97438 * 4 3 2 6 6 O 1.21597 * 120.00199 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99683 * 180.02562 * 5 4 3 8 8 C 1.36879 * 120.00038 * 180.02562 * 7 5 4 9 9 H 1.07995 * 119.99740 * 0.02562 * 8 7 5 10 10 C 1.39045 * 120.00123 * 180.02562 * 8 7 5 11 11 N 1.31369 * 119.99893 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00038 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47051 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47162 * 119.99862 * 12 10 8 15 15 H 1.48496 * 109.47253 * 239.99976 * 12 10 8 16 16 C 1.39696 * 119.72379 * 0.02562 * 4 3 2 17 17 C 1.37863 * 119.85399 * 0.02562 * 16 4 3 18 18 C 1.38475 * 119.92809 * 179.97438 * 2 1 3 19 19 Br 1.89098 * 119.85727 * 359.74696 * 18 2 1 20 20 H 1.08996 * 109.46914 * 270.01927 * 1 2 3 21 21 H 1.08994 * 109.46954 * 30.02133 * 1 2 3 22 22 H 1.09004 * 109.47043 * 150.01907 * 1 2 3 23 23 H 1.08000 * 120.07679 * 359.96100 * 3 2 1 24 24 H 0.97004 * 119.99864 * 0.02562 * 7 5 4 25 25 H 0.96996 * 119.99707 * 179.97438 * 11 10 8 26 26 H 1.07998 * 120.07341 * 180.02562 * 16 4 3 27 27 H 1.08003 * 119.93118 * 179.97438 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1952 0.0000 4 6 3.5917 1.1933 0.0005 5 6 4.3348 2.4696 0.0000 6 8 3.7307 3.5249 -0.0005 7 7 5.6826 2.4646 0.0000 8 6 6.3714 3.6474 0.0000 9 1 5.8349 4.5847 0.0004 10 6 7.7619 3.6422 -0.0006 11 7 8.4144 2.5021 -0.0006 12 14 8.7019 5.2564 -0.0013 13 1 7.7410 6.3888 -0.0005 14 1 9.5563 5.3322 1.2109 15 1 9.5554 5.3317 -1.2141 16 6 4.2827 -0.0208 0.0005 17 6 3.5830 -1.2087 -0.0005 18 6 2.1979 -1.2001 0.0005 19 35 1.2463 -2.8342 0.0085 20 1 -0.3633 0.0003 1.0276 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3633 -0.8902 -0.5136 23 1 1.6552 2.1305 -0.0006 24 1 6.1645 1.6227 0.0000 25 1 9.3844 2.4985 -0.0013 26 1 5.3627 -0.0288 0.0014 27 1 4.1160 -2.1480 -0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135493295.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:57 Heat of formation + Delta-G solvation = -20.589610 kcal Electronic energy + Delta-G solvation = -14010.408187 eV Core-core repulsion = 11392.911678 eV Total energy + Delta-G solvation = -2617.496509 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.49732 -37.62301 -34.19589 -32.99775 -31.82389 -31.33824 -29.28418 -26.83114 -25.22814 -22.68772 -21.66246 -19.24365 -18.28623 -16.60334 -15.68686 -15.18070 -14.73884 -14.15418 -14.09267 -13.85920 -13.38360 -13.12643 -12.65612 -12.20896 -12.03690 -11.74235 -11.37671 -11.25071 -10.98609 -10.63771 -10.45611 -10.38793 -10.05242 -9.71822 -8.63612 -8.59947 -8.39539 -8.17091 -6.66317 -3.97682 1.04647 1.54111 1.72476 3.05624 3.16973 3.24228 3.46254 4.01098 4.36175 4.71720 4.90895 4.95814 5.19414 5.41878 5.50227 5.63354 5.66212 5.77745 5.92239 6.06279 6.23845 6.44898 6.55467 6.75913 7.02509 7.33812 7.86337 8.39869 8.96190 9.30991 9.87242 10.50199 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.047257 B = 0.004022 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.366099 B = 6960.620476 C = 7537.839004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.076 4.076 4 C -0.071 4.071 5 C 0.458 3.542 6 O -0.596 6.596 7 N -0.538 5.538 8 C -0.293 4.293 9 H 0.110 0.890 10 C 0.024 3.976 11 N -0.885 5.885 12 Si 0.936 3.064 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.278 1.278 16 C -0.108 4.108 17 C -0.089 4.089 18 C -0.097 4.097 19 Br -0.064 7.064 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.140 0.860 24 H 0.394 0.606 25 H 0.277 0.723 26 H 0.135 0.865 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.093 -11.874 0.018 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.067 4.067 3 C -0.096 4.096 4 C -0.075 4.075 5 C 0.247 3.753 6 O -0.483 6.483 7 N -0.171 5.171 8 C -0.423 4.423 9 H 0.128 0.872 10 C -0.180 4.180 11 N -0.524 5.524 12 Si 0.762 3.238 13 H -0.189 1.189 14 H -0.204 1.204 15 H -0.204 1.204 16 C -0.128 4.128 17 C -0.109 4.109 18 C -0.177 4.177 19 Br 0.021 6.979 20 H 0.093 0.907 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.158 0.842 24 H 0.229 0.771 25 H 0.087 0.913 26 H 0.153 0.847 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.582 -11.800 0.021 16.534 hybrid contribution 1.206 0.479 0.010 1.297 sum -10.376 -11.321 0.030 15.357 Atomic orbital electron populations 1.20951 0.90484 1.03421 1.02886 1.19673 0.96397 0.91356 0.99311 1.21078 0.93068 0.97373 0.98111 1.20509 0.94308 0.94258 0.98444 1.17662 0.82777 0.87924 0.86944 1.90606 1.68084 1.31906 1.57738 1.41948 1.04565 1.09826 1.60765 1.19942 0.88900 0.87038 1.46391 0.87191 1.25432 0.96782 0.99210 0.96595 1.69593 1.09361 1.25734 1.47737 0.85694 0.79201 0.80938 0.77976 1.18873 1.20422 1.20415 1.21412 1.00434 0.91253 0.99728 1.20934 0.91764 0.98818 0.99408 1.21677 0.94517 0.90455 1.11052 1.96583 1.75658 1.27858 1.97794 0.90705 0.90979 0.90792 0.84238 0.77068 0.91298 0.84697 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.54 36.01 0.34 -1.07 15 2 C -0.07 -0.98 5.88 -104.65 -0.61 -1.59 15 3 C -0.08 -1.34 9.24 -39.17 -0.36 -1.70 15 4 C -0.07 -1.41 5.87 -104.96 -0.62 -2.02 15 5 C 0.46 11.22 7.72 -12.40 -0.10 11.12 15 6 O -0.60 -16.48 15.92 5.28 0.08 -16.39 15 7 N -0.54 -13.57 5.23 -11.88 -0.06 -13.63 15 8 C -0.29 -7.96 9.68 -15.00 -0.15 -8.10 15 9 H 0.11 3.12 7.15 -52.49 -0.38 2.74 15 10 C 0.02 0.61 5.50 -17.45 -0.10 0.52 15 11 N -0.89 -22.98 13.05 55.50 0.72 -22.26 15 12 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 15 13 H -0.26 -5.70 7.11 56.52 0.40 -5.30 15 14 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 16 C -0.11 -1.85 9.54 -39.17 -0.37 -2.22 15 17 C -0.09 -1.32 9.77 -39.62 -0.39 -1.71 15 18 C -0.10 -1.41 6.23 -39.39 -0.25 -1.66 15 19 Br -0.06 -0.77 31.76 -68.01 -2.16 -2.93 15 20 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.07 0.77 8.08 -51.93 -0.42 0.35 15 22 H 0.07 0.80 6.63 -51.93 -0.34 0.45 15 23 H 0.14 2.47 7.65 -52.49 -0.40 2.07 15 24 H 0.39 9.37 5.93 -40.82 -0.24 9.12 15 25 H 0.28 6.73 8.31 -40.82 -0.34 6.39 15 26 H 0.14 2.24 6.40 -52.49 -0.34 1.90 15 27 H 0.13 1.63 8.06 -52.48 -0.42 1.21 15 LS Contribution 262.15 15.07 3.95 3.95 Total: -1.00 -29.07 262.15 -7.18 -36.25 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -2.10 Total: 8.36 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -2.59 Total: -8.44 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.66 Total: -35.89 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.08 Total: -16.39 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.16 Total: -2.93 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.07 -7.18 -36.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135493295.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.661 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds