Wall clock time and date at job start Tue Mar 31 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 119.99995 * 2 1 4 4 H 1.08002 * 120.00008 * 203.04695 * 3 2 1 5 5 C 1.38820 * 120.00160 * 23.04566 * 3 2 1 6 6 N 1.31621 * 119.99659 * 12.93706 * 5 3 2 7 7 Si 1.86795 * 120.00194 * 192.93935 * 5 3 2 8 8 H 1.48501 * 109.46860 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47220 * 119.99645 * 7 5 3 10 10 H 1.48495 * 109.47102 * 240.00080 * 7 5 3 11 11 C 1.46502 * 119.99841 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.46961 * 90.00085 * 11 2 1 13 13 C 1.50702 * 109.46976 * 179.97438 * 12 11 2 14 14 C 1.38258 * 119.99567 * 270.27714 * 13 12 11 15 15 C 1.38224 * 120.02198 * 180.23123 * 14 13 12 16 16 C 1.38244 * 120.00425 * 359.49605 * 15 14 13 17 17 C 1.38300 * 119.99207 * 0.24596 * 16 15 14 18 18 Br 1.89097 * 120.01032 * 179.97438 * 17 16 15 19 19 C 1.38191 * 119.99375 * 90.00092 * 13 12 11 20 20 H 1.09004 * 109.47199 * 275.12140 * 1 2 3 21 21 H 1.08999 * 109.47378 * 35.12280 * 1 2 3 22 22 H 1.09003 * 109.47373 * 155.12249 * 1 2 3 23 23 H 0.96999 * 119.99614 * 179.97438 * 6 5 3 24 24 H 1.09003 * 109.47054 * 329.99868 * 11 2 1 25 25 H 1.09001 * 109.46861 * 209.99754 * 11 2 1 26 26 H 1.09003 * 109.47414 * 60.00004 * 12 11 2 27 27 H 1.09001 * 109.47063 * 299.99545 * 12 11 2 28 28 H 1.08001 * 119.99185 * 359.97438 * 14 13 12 29 29 H 1.08001 * 119.99782 * 179.76384 * 15 14 13 30 30 H 1.08002 * 119.99970 * 180.23492 * 16 15 14 31 31 H 1.08008 * 120.00731 * 0.03828 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5387 2.3401 0.4706 6 7 0.4118 2.2597 1.1460 7 14 2.3157 4.0074 0.1453 8 1 3.5697 3.8264 -0.6292 9 1 1.3714 4.8507 -0.6307 10 1 2.6241 4.6704 1.4378 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4417 13 6 3.2065 -3.0159 -1.4412 14 6 4.5890 -3.0152 -1.4355 15 6 5.2812 -4.2117 -1.4398 16 6 4.5911 -5.4095 -1.4392 17 6 3.2081 -5.4107 -1.4395 18 35 2.2637 -7.0489 -1.4394 19 6 2.5159 -4.2128 -1.4405 20 1 -0.3634 0.0917 1.0236 21 1 -0.3634 0.8405 -0.5912 22 1 -0.3634 -0.9323 -0.4323 23 1 -0.0149 3.0662 1.4752 24 1 1.6084 -2.0282 0.5148 25 1 3.1499 -1.1382 0.5143 26 1 3.0416 -0.9516 -1.9559 27 1 1.5000 -1.8416 -1.9555 28 1 5.1285 -2.0796 -1.4320 29 1 6.3612 -4.2107 -1.4393 30 1 5.1320 -6.3444 -1.4387 31 1 1.4358 -4.2133 -1.4410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136158091.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:20 Heat of formation + Delta-G solvation = 39.718430 kcal Electronic energy + Delta-G solvation = -14232.107615 eV Core-core repulsion = 11753.059354 eV Total energy + Delta-G solvation = -2479.048262 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.31716 -35.87056 -33.23582 -32.04668 -30.90826 -29.29488 -27.85052 -25.84193 -23.94783 -22.39192 -21.21430 -20.11074 -16.72095 -16.66215 -15.39340 -15.17980 -14.69915 -13.71450 -13.62441 -13.39403 -13.32986 -12.85356 -12.42858 -12.13169 -11.34627 -11.26836 -11.09790 -10.86646 -10.79163 -10.68154 -10.49290 -10.29764 -10.17373 -9.85906 -9.79914 -8.83709 -8.65210 -8.46887 -6.72791 -5.71972 -3.18962 1.16448 1.35647 1.60781 3.37402 3.44510 3.46494 3.68707 4.49400 4.81329 4.90125 5.13167 5.36125 5.42497 5.44316 5.58071 5.69428 5.93755 6.02885 6.18847 6.23484 6.37714 6.38422 6.49981 6.75380 6.86066 6.89056 6.98292 7.38182 7.73786 7.80921 8.40190 9.23994 9.87515 10.36655 11.32654 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.038640 B = 0.003707 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.466961 B = 7550.781063 C = 8157.254676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.602 5.602 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.160 3.840 12 C -0.107 4.107 13 C -0.054 4.054 14 C -0.104 4.104 15 C -0.113 4.113 16 C -0.109 4.109 17 C -0.087 4.087 18 Br -0.064 7.064 19 C -0.093 4.093 20 H 0.031 0.969 21 H 0.040 0.960 22 H -0.002 1.002 23 H 0.252 0.748 24 H 0.036 0.964 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.158 -18.352 -6.205 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.324 5.324 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.032 3.968 12 C -0.147 4.147 13 C -0.056 4.056 14 C -0.122 4.122 15 C -0.132 4.132 16 C -0.129 4.129 17 C -0.166 4.166 18 Br 0.021 6.979 19 C -0.113 4.113 20 H 0.050 0.950 21 H 0.059 0.941 22 H 0.016 0.984 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.667 -18.807 -6.111 20.571 hybrid contribution 0.542 1.287 -0.140 1.403 sum 6.209 -17.520 -6.251 19.611 Atomic orbital electron populations 1.20803 0.82647 0.95378 0.99511 1.43939 1.01896 1.00706 1.85855 1.19228 0.98264 0.85618 1.35429 0.91370 1.25033 0.97877 0.98555 0.98190 1.70084 1.19460 1.27082 1.38578 0.86198 0.78565 0.84355 0.77512 1.20306 1.21611 1.21719 1.20671 0.96248 0.88336 0.91577 1.21484 0.99128 0.91609 1.02494 1.20227 0.93857 0.95453 0.96083 1.21290 0.93970 0.98411 0.98569 1.21127 0.99928 0.91919 1.00212 1.20984 0.92015 0.98864 1.01023 1.21728 0.94713 0.91290 1.08851 1.96667 1.75788 1.27608 1.97830 1.21057 1.00301 0.90377 0.99549 0.95040 0.94112 0.98358 0.93799 0.94537 0.93383 0.90751 0.91510 0.85292 0.85457 0.85576 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.98 59.85 0.54 4.54 16 2 N -0.60 -15.16 2.92 -181.11 -0.53 -15.69 16 3 C -0.26 -7.00 9.65 -15.06 -0.15 -7.15 16 4 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 5 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 6 N -0.91 -26.59 10.71 55.49 0.59 -26.00 16 7 Si 0.90 21.75 29.57 -169.99 -5.03 16.73 16 8 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 C 0.16 3.26 5.63 -4.04 -0.02 3.24 16 12 C -0.11 -1.83 5.67 -27.88 -0.16 -1.99 16 13 C -0.05 -0.80 5.13 -104.63 -0.54 -1.34 16 14 C -0.10 -1.37 9.70 -39.58 -0.38 -1.75 16 15 C -0.11 -1.29 10.05 -39.58 -0.40 -1.68 16 16 C -0.11 -1.26 9.79 -39.56 -0.39 -1.65 16 17 C -0.09 -1.11 6.22 -39.52 -0.25 -1.36 16 18 Br -0.06 -0.74 33.70 -68.01 -2.29 -3.03 16 19 C -0.09 -1.30 9.44 -39.56 -0.37 -1.67 16 20 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 21 H 0.04 1.08 7.34 -51.93 -0.38 0.69 16 22 H 0.00 -0.05 8.03 -51.93 -0.42 -0.46 16 23 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 25 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16 26 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 27 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 28 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 31 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 286.99 15.07 4.32 4.32 Total: -1.00 -29.25 286.99 -9.23 -38.48 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -4.09 Total: -3.96 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -2.20 Total: -10.85 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.07 Total: -41.68 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -2.29 Total: -3.03 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.25 -9.23 -38.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136158091.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.195 kcal (2) G-P(sol) polarization free energy of solvation -29.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds