Wall clock time and date at job start Tue Mar 31 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48501 * 109.46792 * 239.99717 * 3 2 1 5 5 H 1.48498 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47259 * 119.99408 * 3 2 1 7 7 C 1.40045 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.46368 * 120.00443 * 0.02562 * 7 2 1 10 10 O 1.21695 * 120.00027 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00280 * 179.97438 * 9 7 2 12 12 N 1.40107 * 120.00112 * 179.97438 * 11 9 7 13 13 C 1.34771 * 119.99742 * 179.97438 * 12 11 9 14 14 O 1.21596 * 119.99855 * 180.02562 * 13 12 11 15 15 N 1.34777 * 120.00338 * 359.97438 * 13 12 11 16 16 C 1.40004 * 119.99998 * 185.33641 * 15 13 12 17 17 C 1.38855 * 120.05464 * 213.54409 * 16 15 13 18 18 C 1.38115 * 119.94231 * 180.23316 * 17 16 15 19 19 C 1.38378 * 120.05652 * 359.48962 * 18 17 16 20 20 Cl 1.73602 * 119.94515 * 180.27544 * 19 18 17 21 21 C 1.38384 * 120.11230 * 0.25584 * 19 18 17 22 22 C 1.38112 * 120.05467 * 0.02562 * 21 19 18 23 23 H 0.96997 * 120.00344 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99918 * 359.97438 * 11 9 7 25 25 H 0.97000 * 119.99970 * 0.02562 * 12 11 9 26 26 H 0.97002 * 120.00274 * 5.33860 * 15 13 12 27 27 H 1.08007 * 120.03054 * 359.97438 * 17 16 15 28 28 H 1.07996 * 119.96954 * 179.76754 * 18 17 16 29 29 H 1.07995 * 119.96942 * 180.02562 * 21 19 18 30 30 H 1.08006 * 120.02312 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 7 1.2486 -4.8610 0.0011 13 6 1.9225 -6.0281 0.0006 14 8 1.3146 -7.0812 0.0006 15 7 3.2703 -6.0281 -0.0010 16 6 3.9702 -7.2354 -0.1143 17 6 5.1861 -7.3979 0.5361 18 6 5.8770 -8.5881 0.4188 19 6 5.3532 -9.6219 -0.3375 20 17 6.2206 -11.1192 -0.4771 21 6 4.1391 -9.4642 -0.9824 22 6 3.4471 -8.2740 -0.8730 23 1 -0.4850 0.8400 -0.0004 24 1 2.9191 -3.6476 0.0002 25 1 0.2786 -4.8610 0.0011 26 1 3.7554 -5.1917 0.0764 27 1 5.5934 -6.5929 1.1299 28 1 6.8245 -8.7137 0.9215 29 1 3.7323 -10.2727 -1.5717 30 1 2.4993 -8.1516 -1.3762 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137091064.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:33 Heat of formation + Delta-G solvation = -9.298564 kcal Electronic energy + Delta-G solvation = -18714.034659 eV Core-core repulsion = 15343.748203 eV Total energy + Delta-G solvation = -3370.286456 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.66702 -38.88277 -37.50481 -36.58149 -34.81143 -34.32093 -32.69296 -31.20834 -30.20719 -29.01643 -26.26146 -23.39138 -22.88923 -21.08531 -20.50911 -19.13734 -17.65552 -17.27204 -16.67028 -15.97587 -15.73209 -15.22948 -14.97207 -14.40367 -14.28174 -14.00312 -13.62073 -13.58822 -12.95938 -12.71657 -12.41625 -12.03830 -11.65069 -11.52043 -11.22595 -11.00257 -10.80943 -10.52223 -10.37660 -10.29133 -10.07139 -9.17251 -9.07481 -8.17990 -8.10058 -7.34727 -6.49103 -4.97186 0.99136 1.17123 2.01848 2.60513 3.00875 3.05222 3.08847 3.12371 3.23400 3.63278 3.96641 4.29327 4.64131 4.73764 5.11066 5.17551 5.30806 5.46609 5.60122 5.80816 5.84827 6.12345 6.16001 6.30928 6.79919 6.82348 7.02636 7.16369 7.59806 7.93922 8.22170 8.68365 8.74073 8.98396 10.22826 10.42826 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.037692 B = 0.003020 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.692555 B = 9268.451660 C = 9898.827661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.087 3.913 3 Si 0.919 3.081 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.075 0.925 9 C 0.555 3.445 10 O -0.571 6.571 11 N -0.571 5.571 12 N -0.514 5.514 13 C 0.703 3.297 14 O -0.584 6.584 15 N -0.687 5.687 16 C 0.185 3.815 17 C -0.141 4.141 18 C -0.089 4.089 19 C -0.059 4.059 20 Cl -0.080 7.080 21 C -0.088 4.088 22 C -0.111 4.111 23 H 0.275 0.725 24 H 0.398 0.602 25 H 0.442 0.558 26 H 0.408 0.592 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.079 -12.532 -0.555 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.093 0.907 9 C 0.360 3.640 10 O -0.451 6.451 11 N -0.329 5.329 12 N -0.263 5.263 13 C 0.402 3.598 14 O -0.460 6.460 15 N -0.336 5.336 16 C 0.089 3.911 17 C -0.162 4.162 18 C -0.108 4.108 19 C -0.087 4.087 20 Cl -0.051 7.051 21 C -0.108 4.108 22 C -0.132 4.132 23 H 0.085 0.915 24 H 0.237 0.763 25 H 0.287 0.713 26 H 0.245 0.755 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.655 -13.239 -0.575 17.648 hybrid contribution 0.845 1.140 0.090 1.422 sum 12.500 -12.098 -0.485 17.403 Atomic orbital electron populations 1.69983 1.07183 1.28198 1.33402 1.25725 0.94784 1.00528 0.92439 0.86244 0.79691 0.80161 0.79653 1.19033 1.20357 1.19034 1.20611 0.93778 0.87832 1.54959 0.90679 1.18641 0.87724 0.80594 0.77023 1.90655 1.13722 1.85415 1.55303 1.46023 1.06378 0.95557 1.84939 1.44303 1.09059 0.96520 1.76434 1.15652 0.81318 0.83626 0.79158 1.90979 1.67149 1.28346 1.59501 1.42670 1.05522 1.08394 1.77059 1.17598 0.91991 0.86486 0.95047 1.20843 0.95749 0.98469 1.01145 1.20765 1.00165 0.91555 0.98301 1.20845 0.95347 0.88530 1.03965 1.98353 1.76470 1.33071 1.97228 1.20926 0.92844 0.97938 0.99069 1.21225 1.01172 0.92318 0.98467 0.91461 0.76334 0.71268 0.75518 0.84629 0.84702 0.84755 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.04 11.83 55.55 0.66 -20.38 16 2 C 0.09 2.20 5.50 -17.37 -0.10 2.11 16 3 Si 0.92 18.25 29.56 -169.99 -5.02 13.23 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.53 -13.36 9.54 -35.64 -0.34 -13.70 16 8 H 0.08 1.64 7.85 -52.49 -0.41 1.23 16 9 C 0.55 14.15 7.86 -12.99 -0.10 14.05 16 10 O -0.57 -16.93 14.86 5.19 0.08 -16.85 16 11 N -0.57 -11.26 6.25 30.19 0.19 -11.07 16 12 N -0.51 -9.73 6.26 27.63 0.17 -9.56 16 13 C 0.70 12.16 8.41 -86.92 -0.73 11.43 16 14 O -0.58 -11.39 14.86 5.28 0.08 -11.31 16 15 N -0.69 -9.35 5.30 -14.22 -0.08 -9.43 16 16 C 0.19 2.38 6.28 -83.67 -0.53 1.86 16 17 C -0.14 -1.47 9.96 -39.40 -0.39 -1.86 16 18 C -0.09 -0.87 9.82 -39.57 -0.39 -1.26 16 19 C -0.06 -0.64 6.32 -39.48 -0.25 -0.89 16 20 Cl -0.08 -0.79 28.95 -51.86 -1.50 -2.29 16 21 C -0.09 -1.01 9.82 -39.57 -0.39 -1.40 16 22 C -0.11 -1.47 8.65 -39.40 -0.34 -1.82 16 23 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 24 H 0.40 6.33 6.70 -182.59 -1.22 5.10 16 25 H 0.44 8.99 8.10 -182.59 -1.48 7.52 16 26 H 0.41 4.63 6.76 -40.82 -0.28 4.35 16 27 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 28 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.15 2.16 6.41 -52.48 -0.34 1.82 16 LS Contribution 289.65 15.07 4.36 4.36 Total: -1.00 -31.80 289.65 -8.74 -40.55 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -4.13 Total: 14.24 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -3.55 Total: 8.51 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.94 Total: -50.44 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: 0.16 Total: -28.17 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.02 Total: 13.23 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.80 -8.74 -40.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137091064.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.249 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds