Wall clock time and date at job start Tue Mar 31 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48501 * 109.46792 * 239.99717 * 3 2 1 5 5 H 1.48498 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47259 * 119.99408 * 3 2 1 7 7 C 1.40045 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.46368 * 120.00443 * 0.02562 * 7 2 1 10 10 O 1.21695 * 120.00027 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00280 * 179.97438 * 9 7 2 12 12 N 1.40107 * 120.00112 * 179.97438 * 11 9 7 13 13 C 1.34771 * 119.99742 * 179.97438 * 12 11 9 14 14 O 1.21596 * 119.99855 * 180.02562 * 13 12 11 15 15 N 1.34777 * 120.00338 * 359.97438 * 13 12 11 16 16 C 1.40004 * 119.99998 * 185.33641 * 15 13 12 17 17 C 1.38855 * 120.05464 * 213.54409 * 16 15 13 18 18 C 1.38115 * 119.94231 * 180.23316 * 17 16 15 19 19 C 1.38378 * 120.05652 * 359.48962 * 18 17 16 20 20 Cl 1.73602 * 119.94515 * 180.27544 * 19 18 17 21 21 C 1.38384 * 120.11230 * 0.25584 * 19 18 17 22 22 C 1.38112 * 120.05467 * 0.02562 * 21 19 18 23 23 H 0.96997 * 120.00344 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99918 * 359.97438 * 11 9 7 25 25 H 0.97000 * 119.99970 * 0.02562 * 12 11 9 26 26 H 0.97002 * 120.00274 * 5.33860 * 15 13 12 27 27 H 1.08007 * 120.03054 * 359.97438 * 17 16 15 28 28 H 1.07996 * 119.96954 * 179.76754 * 18 17 16 29 29 H 1.07995 * 119.96942 * 180.02562 * 21 19 18 30 30 H 1.08006 * 120.02312 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 7 1.2486 -4.8610 0.0011 13 6 1.9225 -6.0281 0.0006 14 8 1.3146 -7.0812 0.0006 15 7 3.2703 -6.0281 -0.0010 16 6 3.9702 -7.2354 -0.1143 17 6 5.1861 -7.3979 0.5361 18 6 5.8770 -8.5881 0.4188 19 6 5.3532 -9.6219 -0.3375 20 17 6.2206 -11.1192 -0.4771 21 6 4.1391 -9.4642 -0.9824 22 6 3.4471 -8.2740 -0.8730 23 1 -0.4850 0.8400 -0.0004 24 1 2.9191 -3.6476 0.0002 25 1 0.2786 -4.8610 0.0011 26 1 3.7554 -5.1917 0.0764 27 1 5.5934 -6.5929 1.1299 28 1 6.8245 -8.7137 0.9215 29 1 3.7323 -10.2727 -1.5717 30 1 2.4993 -8.1516 -1.3762 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137091064.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:32 Heat of formation + Delta-G solvation = -32.105287 kcal Electronic energy + Delta-G solvation = -18715.023632 eV Core-core repulsion = 15343.748203 eV Total energy + Delta-G solvation = -3371.275429 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.92135 -40.05766 -39.21374 -37.46235 -36.43884 -35.56670 -34.62586 -32.09203 -31.85189 -30.09403 -28.13187 -24.43284 -23.85299 -22.80349 -21.83039 -20.54937 -18.99336 -18.77007 -17.96990 -17.42247 -16.94810 -16.83444 -16.25705 -15.73219 -15.67300 -15.17184 -14.86960 -14.59495 -14.44480 -14.41406 -13.34747 -13.25727 -13.00125 -12.77068 -12.71886 -12.50800 -12.08025 -12.05118 -11.87745 -11.63417 -11.20006 -10.92616 -10.13016 -10.04388 -9.29007 -8.91869 -8.37381 -6.93551 0.05576 0.29875 1.10118 1.20949 1.47592 1.48151 1.61753 1.79130 1.92300 2.31144 2.41131 2.67514 3.53610 3.78361 3.91238 4.04935 4.26154 4.36422 4.47450 4.88155 4.98626 5.17339 5.20141 5.25249 5.29595 5.33992 5.78335 5.81156 5.85109 6.16499 6.76927 6.78936 7.22307 7.27208 8.33883 8.57569 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.037692 B = 0.003020 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.692555 B = 9268.451660 C = 9898.827661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.030 3.970 3 Si 1.004 2.996 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.553 4.553 8 H 0.106 0.894 9 C 0.541 3.459 10 O -0.623 6.623 11 N -0.553 5.553 12 N -0.523 5.523 13 C 0.708 3.292 14 O -0.606 6.606 15 N -0.672 5.672 16 C 0.160 3.840 17 C -0.129 4.129 18 C -0.083 4.083 19 C -0.061 4.061 20 Cl -0.069 7.069 21 C -0.092 4.092 22 C -0.130 4.130 23 H 0.278 0.722 24 H 0.419 0.581 25 H 0.432 0.568 26 H 0.419 0.581 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.145 0.855 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.421 -12.306 -0.058 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.186 4.186 3 Si 0.823 3.177 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.591 4.591 8 H 0.124 0.876 9 C 0.347 3.653 10 O -0.507 6.507 11 N -0.310 5.310 12 N -0.271 5.271 13 C 0.408 3.592 14 O -0.484 6.484 15 N -0.322 5.322 16 C 0.064 3.936 17 C -0.149 4.149 18 C -0.102 4.102 19 C -0.089 4.089 20 Cl -0.040 7.040 21 C -0.112 4.112 22 C -0.151 4.151 23 H 0.088 0.912 24 H 0.261 0.739 25 H 0.276 0.724 26 H 0.258 0.742 27 H 0.182 0.818 28 H 0.181 0.819 29 H 0.163 0.837 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.110 -13.074 -0.081 19.981 hybrid contribution -0.117 0.867 -0.073 0.878 sum 14.993 -12.207 -0.154 19.334 Atomic orbital electron populations 1.70161 1.09664 1.29546 1.35222 1.27006 0.95529 1.05013 0.91069 0.84952 0.78032 0.74135 0.80545 1.17558 1.20578 1.17457 1.21227 0.95402 0.87954 1.54511 0.87602 1.18985 0.87307 0.82291 0.76730 1.90618 1.15959 1.86614 1.57523 1.45372 1.07073 0.95033 1.83514 1.44347 1.08765 0.96497 1.77517 1.15691 0.82390 0.82556 0.78612 1.90964 1.68119 1.28894 1.60424 1.42451 1.04006 1.09517 1.76243 1.17839 0.93160 0.86041 0.96525 1.21121 0.94278 0.99401 1.00121 1.21121 1.00913 0.90746 0.97463 1.21008 0.95078 0.89251 1.03548 1.98362 1.76055 1.32462 1.97166 1.21018 0.93210 0.97589 0.99351 1.21139 1.00887 0.93582 0.99458 0.91231 0.73909 0.72417 0.74170 0.81822 0.81872 0.83716 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.29 11.83 21.84 0.26 -46.03 16 2 C 0.03 1.52 5.50 85.30 0.47 1.99 16 3 Si 1.00 36.46 29.56 68.60 2.03 38.49 16 4 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 5 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 7 C -0.55 -27.33 9.54 24.83 0.24 -27.10 16 8 H 0.11 4.38 7.85 -2.91 -0.02 4.36 16 9 C 0.54 27.97 7.86 86.36 0.68 28.65 16 10 O -0.62 -38.30 14.86 -4.33 -0.06 -38.36 16 11 N -0.55 -21.68 6.25 -176.63 -1.10 -22.79 16 12 N -0.52 -20.15 6.26 -184.75 -1.16 -21.31 16 13 C 0.71 24.61 8.41 179.06 1.51 26.12 16 14 O -0.61 -24.21 14.86 -4.02 -0.06 -24.27 16 15 N -0.67 -17.58 5.30 -317.15 -1.68 -19.26 16 16 C 0.16 3.89 6.28 38.13 0.24 4.13 16 17 C -0.13 -2.29 9.96 22.39 0.22 -2.06 16 18 C -0.08 -1.37 9.82 22.27 0.22 -1.15 16 19 C -0.06 -1.19 6.32 22.34 0.14 -1.04 16 20 Cl -0.07 -1.20 28.95 -2.72 -0.08 -1.28 16 21 C -0.09 -2.02 9.82 22.27 0.22 -1.80 16 22 C -0.13 -3.43 8.65 22.39 0.19 -3.23 16 23 H 0.28 14.34 8.29 -92.71 -0.77 13.57 16 24 H 0.42 12.70 6.70 -213.32 -1.43 11.28 16 25 H 0.43 18.40 8.10 -213.32 -1.73 16.67 16 26 H 0.42 8.71 6.76 -92.71 -0.63 8.09 16 27 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 28 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 29 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.12 3.81 6.41 -2.91 -0.02 3.79 16 Total: -1.00 -70.89 289.65 -0.27 -71.16 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: -2.54 Total: 39.16 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: 4.13 Total: 24.50 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -3.68 Total: -109.39 kcal Atomic # 8 Polarization: -62.51 SS G_CDS: -0.12 Total: -62.63 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -70.89 -0.27 -71.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137091064.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.055 kcal (2) G-P(sol) polarization free energy of solvation -70.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds