Wall clock time and date at job start Tue Mar 31 2020 05:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86803 * 119.99705 * 2 1 4 4 H 1.48498 * 109.46814 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47144 * 299.99610 * 3 2 1 6 6 H 1.48497 * 109.47200 * 60.00014 * 3 2 1 7 7 C 1.38632 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00161 * 180.02562 * 7 2 1 9 9 O 1.34777 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.35662 * 116.99979 * 180.02562 * 9 7 2 11 11 C 1.37969 * 120.23872 * 270.02179 * 10 9 7 12 12 Cl 1.73608 * 119.59186 * 359.97438 * 11 10 9 13 13 C 1.39190 * 120.82305 * 179.97438 * 11 10 9 14 14 C 1.36361 * 120.93160 * 359.97438 * 13 11 10 15 15 Cl 1.73600 * 120.04883 * 179.97438 * 14 13 11 16 16 C 1.40525 * 119.89729 * 359.71540 * 14 13 11 17 17 C 1.40751 * 121.27875 * 179.63702 * 16 14 13 18 18 C 1.36619 * 118.16601 * 180.36432 * 17 16 14 19 19 C 1.39278 * 119.92786 * 0.27650 * 18 17 16 20 20 N 1.31133 * 121.72014 * 0.02562 * 19 18 17 21 21 C 1.33558 * 121.33180 * 359.97438 * 20 19 18 22 22 H 0.96996 * 120.00191 * 0.02562 * 1 2 3 23 23 H 1.07995 * 119.53721 * 179.97438 * 13 11 10 24 24 H 1.08002 * 120.92030 * 0.64395 * 17 16 14 25 25 H 1.07998 * 120.03415 * 180.25300 * 18 17 16 26 26 H 1.08010 * 119.14013 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2126 6 1 1.8909 2.3965 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3350 -2.3678 -0.0005 10 6 2.0739 -3.5055 -0.0005 11 6 2.4528 -4.0880 -1.1925 12 17 1.9775 -3.3563 -2.6934 13 6 3.2113 -5.2550 -1.2067 14 6 3.6000 -5.8524 -0.0442 15 17 4.5453 -7.3079 -0.0887 16 6 3.2390 -5.2852 1.1897 17 6 3.6181 -5.8814 2.4070 18 6 3.2262 -5.2799 3.5694 19 6 2.4677 -4.1126 3.5263 20 7 2.1114 -3.5634 2.3900 21 6 2.4619 -4.1011 1.2187 22 1 -0.4850 0.8400 -0.0004 23 1 3.4960 -5.6934 -2.1517 24 1 4.2065 -6.7870 2.4219 25 1 3.5038 -5.7094 4.5206 26 1 2.1644 -3.6479 4.4529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000143246717.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:03 Heat of formation + Delta-G solvation = 21.419543 kcal Electronic energy + Delta-G solvation = -17144.140777 eV Core-core repulsion = 14047.769678 eV Total energy + Delta-G solvation = -3096.371099 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.991 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62778 -37.77634 -37.01139 -36.03459 -35.25379 -32.76918 -31.76249 -30.29698 -28.67319 -24.93844 -24.01374 -23.47595 -21.48098 -18.37949 -18.01447 -17.09419 -17.04753 -15.78380 -14.89847 -14.55076 -14.45441 -14.20291 -13.57171 -13.26680 -13.06142 -12.67442 -12.62875 -12.00950 -11.85582 -11.44181 -11.18675 -10.93739 -10.48164 -10.38574 -10.32964 -10.22175 -10.03863 -9.66473 -9.12994 -8.52825 -8.23093 -7.54155 -6.06685 -3.76869 0.52451 0.89099 2.02246 2.08739 2.75988 2.95453 3.26705 3.30549 3.34641 4.12452 4.34661 4.49376 4.73976 4.85251 4.99959 5.09988 5.13085 5.32760 5.53323 5.70065 5.79160 6.01554 6.09514 6.27684 6.44620 6.58967 6.88585 7.36859 8.23887 8.28437 9.34301 9.92536 11.11929 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.006951 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.001878 B = 4027.432310 C = 5114.219652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.037 3.963 3 Si 0.930 3.070 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.355 4.355 8 H 0.069 0.931 9 O -0.207 6.207 10 C 0.205 3.795 11 C -0.078 4.078 12 Cl -0.039 7.039 13 C -0.068 4.068 14 C -0.049 4.049 15 Cl -0.068 7.068 16 C -0.081 4.081 17 C -0.071 4.071 18 C -0.164 4.164 19 C 0.113 3.887 20 N -0.417 5.417 21 C 0.113 3.887 22 H 0.261 0.739 23 H 0.142 0.858 24 H 0.139 0.861 25 H 0.136 0.864 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.188 -12.192 2.598 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.163 4.163 3 Si 0.756 3.244 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.087 0.913 9 O -0.118 6.118 10 C 0.156 3.844 11 C -0.108 4.108 12 Cl -0.010 7.010 13 C -0.087 4.087 14 C -0.076 4.076 15 Cl -0.040 7.040 16 C -0.084 4.084 17 C -0.097 4.097 18 C -0.184 4.184 19 C -0.060 4.060 20 N -0.123 5.123 21 C -0.011 4.011 22 H 0.071 0.929 23 H 0.160 0.840 24 H 0.157 0.843 25 H 0.154 0.846 26 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.354 -11.297 2.330 13.680 hybrid contribution 1.128 -0.146 -0.055 1.139 sum 8.482 -11.443 2.275 14.424 Atomic orbital electron populations 1.70039 1.05346 1.26283 1.50001 1.24936 0.95744 0.97550 0.98065 0.85825 0.78941 0.81737 0.77880 1.19701 1.20595 1.20587 1.20749 0.89947 0.79737 1.52656 0.91349 1.83801 1.27740 1.09051 1.91247 1.18853 0.86714 0.90788 0.88030 1.21160 1.03617 0.97321 0.88691 1.98361 1.90614 1.82523 1.29458 1.20477 0.96691 0.93664 0.97906 1.20102 1.02326 0.91809 0.93392 1.98326 1.71366 1.35609 1.98664 1.18514 1.00185 0.96418 0.93267 1.21388 0.97834 0.99348 0.91171 1.21924 0.99853 0.97530 0.99077 1.23103 0.93861 0.92423 0.96623 1.68189 1.17664 1.29445 0.97043 1.19334 0.96260 0.92263 0.93230 0.92876 0.83997 0.84298 0.84590 0.82324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.65 13.67 55.48 0.76 -25.89 15 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 15 3 Si 0.93 21.81 29.55 -169.99 -5.02 16.78 15 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 7 C -0.36 -10.10 9.82 30.88 0.30 -9.79 15 8 H 0.07 1.90 7.75 -52.49 -0.41 1.49 15 9 O -0.21 -5.83 8.89 0.47 0.00 -5.82 15 10 C 0.21 4.81 5.63 -38.58 -0.22 4.59 15 11 C -0.08 -1.58 6.33 -39.33 -0.25 -1.83 15 12 Cl -0.04 -0.77 28.44 -51.86 -1.48 -2.25 15 13 C -0.07 -1.11 9.49 -39.90 -0.38 -1.49 15 14 C -0.05 -0.76 6.32 -39.40 -0.25 -1.01 15 15 Cl -0.07 -0.86 27.52 -51.86 -1.43 -2.28 15 16 C -0.08 -1.39 5.74 -106.78 -0.61 -2.00 15 17 C -0.07 -0.98 9.52 -39.22 -0.37 -1.36 15 18 C -0.16 -2.07 10.03 -39.78 -0.40 -2.47 15 19 C 0.11 1.76 11.15 -17.46 -0.19 1.57 15 20 N -0.42 -8.81 10.13 -10.87 -0.11 -8.92 15 21 C 0.11 2.38 6.62 -84.71 -0.56 1.82 15 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 23 H 0.14 1.92 8.06 -52.49 -0.42 1.50 15 24 H 0.14 1.55 7.04 -52.49 -0.37 1.18 15 25 H 0.14 1.16 8.06 -52.49 -0.42 0.74 15 26 H 0.16 1.95 8.06 -52.48 -0.42 1.52 15 LS Contribution 272.94 15.07 4.11 4.11 Total: -1.00 -32.29 272.94 -7.37 -39.66 By element: Atomic # 1 Polarization: -3.21 SS G_CDS: -1.18 Total: -4.39 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -3.03 Total: -11.00 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.65 Total: -34.81 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: 0.00 Total: -5.82 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -2.90 Total: -4.53 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.29 -7.37 -39.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143246717.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.076 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds