Wall clock time and date at job start Tue Mar 31 2020 05:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31651 * 1 3 3 Si 1.86800 * 119.99477 * 2 1 4 4 H 1.48499 * 109.46813 * 239.99502 * 3 2 1 5 5 H 1.48491 * 109.47605 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47082 * 120.00087 * 3 2 1 7 7 C 1.38683 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99465 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00493 * 0.02562 * 7 2 1 10 10 C 1.76203 * 100.00163 * 179.97438 * 9 7 2 11 11 N 1.31453 * 125.49780 * 0.02562 * 10 9 7 12 12 N 1.40426 * 106.92522 * 179.76887 * 11 10 9 13 13 H 0.97001 * 126.80646 * 180.23666 * 12 11 10 14 14 C 1.35280 * 106.38405 * 0.37208 * 12 11 10 15 15 C 1.47975 * 126.01775 * 179.89588 * 14 12 11 16 16 C 1.39478 * 120.11326 * 359.70726 * 15 14 12 17 17 C 1.38223 * 119.88479 * 180.02562 * 16 15 14 18 18 F 1.35102 * 119.94087 * 180.25136 * 17 16 15 19 19 C 1.38525 * 120.11350 * 359.97438 * 17 16 15 20 20 C 1.38515 * 120.22947 * 0.02562 * 19 17 16 21 21 F 1.35107 * 119.94360 * 179.97438 * 20 19 17 22 22 C 1.38215 * 120.11755 * 0.02562 * 20 19 17 23 23 N 1.31718 * 107.96640 * 359.62480 * 14 12 11 24 24 H 0.96998 * 120.00144 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.05726 * 359.96016 * 16 15 14 26 26 H 1.08003 * 119.88292 * 180.02562 * 19 17 16 27 27 H 1.08003 * 120.06191 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1042 1.6964 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6965 1.2125 7 6 2.0099 -1.2010 0.0005 8 1 3.0899 -1.2010 0.0010 9 16 1.1290 -2.7270 0.0005 10 6 2.4789 -3.8596 0.0005 11 7 3.7515 -3.5303 0.0010 12 7 4.4838 -4.7285 0.0062 13 1 5.4495 -4.8194 0.0110 14 6 3.5753 -5.7309 0.0002 15 6 3.8779 -7.1794 0.0003 16 6 5.2020 -7.6177 0.0010 17 6 5.4792 -8.9719 0.0006 18 9 6.7613 -9.3977 0.0064 19 6 4.4446 -9.8931 0.0001 20 6 3.1279 -9.4630 -0.0006 21 9 2.1234 -10.3665 -0.0016 22 6 2.8399 -8.1112 -0.0012 23 7 2.3741 -5.1906 0.0001 24 1 -0.4850 0.8400 -0.0004 25 1 6.0092 -6.9004 0.0007 26 1 4.6655 -10.9503 0.0002 27 1 1.8129 -7.7769 -0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151118073.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:52 Heat of formation + Delta-G solvation = 13.727094 kcal Electronic energy + Delta-G solvation = -18071.586968 eV Core-core repulsion = 14593.255171 eV Total energy + Delta-G solvation = -3478.331797 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.029 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.37614 -49.27439 -41.45638 -38.95364 -32.72816 -32.67161 -32.10546 -30.59845 -29.53792 -25.71433 -24.39029 -23.36024 -22.11465 -20.84961 -18.80761 -18.01045 -17.28813 -16.92556 -16.65356 -16.33210 -15.91171 -15.61787 -15.15490 -15.08763 -14.94127 -14.70914 -14.35207 -13.17474 -13.00311 -12.47837 -12.37217 -12.08906 -11.62601 -11.15368 -11.14322 -11.02404 -10.36595 -10.21441 -9.95281 -9.73208 -9.21300 -9.15616 -8.76066 -8.75086 -6.80504 -6.44658 -4.18643 0.24360 0.59552 2.05442 2.64192 2.95303 2.96353 3.19640 3.21606 3.27349 3.49289 3.54562 3.88251 4.01909 4.16045 4.36504 4.54552 4.65605 4.89927 4.97775 5.12934 5.37454 5.41102 5.57180 5.69724 5.90586 6.32727 6.35059 6.80778 7.34459 7.55504 8.29154 8.47049 9.05619 10.63007 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.035186 B = 0.003544 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.574927 B = 7898.399486 C = 8684.131180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.077 3.923 3 Si 0.930 3.070 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.096 0.904 9 S 0.165 5.835 10 C 0.202 3.798 11 N -0.308 5.308 12 N -0.487 5.487 13 H 0.431 0.569 14 C 0.295 3.705 15 C 0.049 3.951 16 C -0.151 4.151 17 C 0.134 3.866 18 F -0.128 7.128 19 C -0.183 4.183 20 C 0.135 3.865 21 F -0.125 7.125 22 C -0.116 4.116 23 N -0.504 5.504 24 H 0.275 0.725 25 H 0.142 0.858 26 H 0.152 0.848 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.318 -17.315 0.008 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.133 4.133 3 Si 0.755 3.245 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.697 4.697 8 H 0.114 0.886 9 S 0.394 5.606 10 C -0.183 4.183 11 N -0.143 5.143 12 N -0.206 5.206 13 H 0.276 0.724 14 C 0.018 3.982 15 C 0.046 3.954 16 C -0.173 4.173 17 C 0.115 3.885 18 F -0.107 7.107 19 C -0.204 4.204 20 C 0.115 3.885 21 F -0.104 7.104 22 C -0.137 4.137 23 N -0.235 5.235 24 H 0.085 0.915 25 H 0.160 0.840 26 H 0.170 0.830 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.820 -16.774 0.009 18.507 hybrid contribution 2.714 0.697 0.001 2.802 sum 10.534 -16.077 0.009 19.221 Atomic orbital electron populations 1.69943 1.06008 1.28498 1.46316 1.25043 0.95137 0.99496 0.93575 0.86028 0.79132 0.80076 0.79215 1.19640 1.20688 1.19635 1.23157 0.96961 0.90414 1.59124 0.88578 1.83817 0.97042 0.93424 1.86307 1.27575 0.97817 0.93987 0.98918 1.78681 1.04245 1.00769 1.30630 1.48046 1.09581 1.04311 1.58705 0.72427 1.21803 0.86493 0.89598 1.00354 1.17042 0.91928 0.87641 0.98813 1.21070 0.96716 0.94701 1.04788 1.16887 0.78701 0.91491 1.01470 1.91555 1.34944 1.90464 1.93705 1.21128 0.90788 1.01566 1.06887 1.17059 0.84137 0.86347 1.00935 1.91569 1.58943 1.66296 1.93554 1.21361 1.02036 0.89991 1.00288 1.70733 1.21204 1.07192 1.24384 0.91534 0.84001 0.83024 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.50 13.22 55.48 0.73 -23.76 15 2 C 0.08 2.10 5.49 -17.46 -0.10 2.01 15 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 7 C -0.55 -15.22 9.36 30.90 0.29 -14.93 15 8 H 0.10 2.68 6.87 -52.48 -0.36 2.32 15 9 S 0.17 4.28 21.89 -107.50 -2.35 1.93 15 10 C 0.20 4.74 8.19 -90.94 -0.74 4.00 15 11 N -0.31 -6.87 11.52 30.13 0.35 -6.53 15 12 N -0.49 -8.07 7.34 32.24 0.24 -7.84 15 13 H 0.43 5.16 8.10 -182.35 -1.48 3.68 15 14 C 0.30 4.88 7.82 -155.46 -1.22 3.67 15 15 C 0.05 0.60 5.87 -104.98 -0.62 -0.02 15 16 C -0.15 -1.46 9.67 -39.12 -0.38 -1.83 15 17 C 0.13 1.21 7.29 -39.48 -0.29 0.92 15 18 F -0.13 -1.18 17.26 2.25 0.04 -1.14 15 19 C -0.18 -1.56 10.00 -39.37 -0.39 -1.95 15 20 C 0.13 1.34 7.29 -39.49 -0.29 1.05 15 21 F -0.13 -1.30 17.26 2.25 0.04 -1.26 15 22 C -0.12 -1.34 9.67 -39.12 -0.38 -1.71 15 23 N -0.50 -10.36 10.86 -11.42 -0.12 -10.49 15 24 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 25 H 0.14 1.07 7.19 -52.49 -0.38 0.69 15 26 H 0.15 0.96 8.06 -52.48 -0.42 0.54 15 27 H 0.16 1.99 7.85 -52.48 -0.41 1.57 15 LS Contribution 277.26 15.07 4.18 4.18 Total: -1.00 -30.91 277.26 -8.22 -39.13 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -2.19 Total: -1.40 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -4.11 Total: -8.80 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 1.19 Total: -48.61 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.08 Total: -2.40 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -2.35 Total: 1.93 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.91 -8.22 -39.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151118073.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.862 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds