Wall clock time and date at job start Tue Mar 31 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 120.01152 * 2 1 4 4 C 1.38220 * 120.01359 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.98843 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47402 * 90.00516 * 5 4 3 7 7 C 1.46501 * 119.99864 * 269.99737 * 6 5 4 8 8 C 1.36930 * 120.00162 * 89.99462 * 6 5 4 9 9 H 1.08001 * 120.00114 * 22.38120 * 8 6 5 10 10 C 1.38814 * 119.99871 * 202.37561 * 8 6 5 11 11 N 1.31611 * 120.00084 * 11.32915 * 10 8 6 12 12 Si 1.86804 * 119.99970 * 191.32877 * 10 8 6 13 13 H 1.48503 * 109.47148 * 89.99849 * 12 10 8 14 14 H 1.48504 * 109.47200 * 210.00337 * 12 10 8 15 15 H 1.48503 * 109.47134 * 330.00236 * 12 10 8 16 16 C 1.38258 * 120.01565 * 359.97438 * 4 3 2 17 17 C 1.38193 * 120.01324 * 0.02562 * 16 4 3 18 18 C 1.38311 * 119.99831 * 179.97438 * 2 1 3 19 19 Br 1.89097 * 120.01157 * 359.74992 * 18 2 1 20 20 H 1.08995 * 109.47161 * 270.02352 * 1 2 3 21 21 H 1.09003 * 109.46397 * 30.02260 * 1 2 3 22 22 H 1.08996 * 109.47153 * 150.02224 * 1 2 3 23 23 H 1.08005 * 119.99184 * 359.97438 * 3 2 1 24 24 H 1.09000 * 109.46785 * 210.00285 * 5 4 3 25 25 H 1.08998 * 109.47150 * 329.99548 * 5 4 3 26 26 H 1.08997 * 109.47448 * 94.19746 * 7 6 5 27 27 H 1.08993 * 109.47533 * 214.20732 * 7 6 5 28 28 H 1.09005 * 109.47121 * 334.20394 * 7 6 5 29 29 H 0.97005 * 120.00447 * 179.97438 * 11 10 8 30 30 H 1.08005 * 119.99088 * 179.97438 * 16 4 3 31 31 H 1.08004 * 120.00094 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1970 0.0000 4 6 3.5807 1.1971 0.0005 5 6 4.3338 2.5023 0.0011 6 7 4.5775 2.9250 1.3825 7 6 3.6004 3.7704 2.0729 8 6 5.7184 2.5297 2.0283 9 1 6.5862 2.2324 1.4582 10 6 5.7597 2.5113 3.4157 11 7 4.6502 2.6547 4.1090 12 14 7.3899 2.2828 4.2987 13 1 8.0094 3.6097 4.5455 14 1 7.1589 1.5955 5.5946 15 1 8.2975 1.4616 3.4577 16 6 4.2723 -0.0001 0.0016 17 6 3.5820 -1.1972 0.0016 18 6 2.1986 -1.1978 0.0005 19 35 1.2534 -2.8356 0.0084 20 1 -0.3633 0.0004 1.0276 21 1 -0.3632 0.8898 -0.5142 22 1 -0.3633 -0.8901 -0.5135 23 1 1.6585 2.1324 -0.0004 24 1 5.2864 2.3723 -0.5124 25 1 3.7448 3.2619 -0.5128 26 1 2.9184 3.1432 2.6469 27 1 4.1208 4.4519 2.7459 28 1 3.0349 4.3454 1.3396 29 1 4.6790 2.6415 5.0785 30 1 5.3524 0.0004 0.0016 31 1 4.1225 -2.1323 0.0029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158167914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:09 Heat of formation + Delta-G solvation = 42.023526 kcal Electronic energy + Delta-G solvation = -14722.558749 eV Core-core repulsion = 12243.610444 eV Total energy + Delta-G solvation = -2478.948305 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.03152 -35.66925 -32.91004 -31.87556 -30.95642 -29.17617 -26.79937 -25.88329 -25.33182 -21.91003 -21.47413 -19.67936 -16.79858 -15.84872 -15.22512 -14.93829 -14.41689 -13.84316 -13.46936 -13.20154 -13.06931 -12.67844 -12.13013 -11.86020 -11.82150 -11.33982 -10.97859 -10.85422 -10.69217 -10.64094 -10.40588 -10.22231 -10.03818 -9.92156 -9.82271 -8.61608 -8.32019 -8.01416 -6.84883 -5.79398 -3.23434 1.63875 1.83161 1.98991 3.34922 3.41007 3.42512 4.11701 4.47299 5.12387 5.17397 5.35404 5.50259 5.65883 5.72679 5.80322 5.82079 5.98496 6.02520 6.15479 6.30348 6.52788 6.58677 6.69157 6.72165 6.84688 7.25040 7.33101 7.40355 7.68096 7.75500 8.31956 9.15828 9.77752 10.26487 11.24976 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.005230 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.040388 B = 5351.939012 C = 5786.763121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.111 4.111 4 C -0.058 4.058 5 C 0.177 3.823 6 N -0.588 5.588 7 C 0.162 3.838 8 C -0.255 4.255 9 H 0.071 0.929 10 C 0.004 3.996 11 N -0.902 5.902 12 Si 0.906 3.094 13 H -0.287 1.287 14 H -0.291 1.291 15 H -0.278 1.278 16 C -0.104 4.104 17 C -0.090 4.090 18 C -0.109 4.109 19 Br -0.076 7.076 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.121 0.879 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.048 0.952 28 H -0.002 1.002 29 H 0.254 0.746 30 H 0.125 0.875 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.568 -7.552 -9.727 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.065 4.065 3 C -0.131 4.131 4 C -0.062 4.062 5 C 0.050 3.950 6 N -0.309 5.309 7 C 0.018 3.982 8 C -0.384 4.384 9 H 0.089 0.911 10 C -0.195 4.195 11 N -0.546 5.546 12 Si 0.736 3.264 13 H -0.214 1.214 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.123 4.123 17 C -0.110 4.110 18 C -0.188 4.188 19 Br 0.009 6.991 20 H 0.091 0.909 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.139 0.861 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.017 0.983 29 H 0.064 0.936 30 H 0.143 0.857 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.923 -8.095 -9.498 14.782 hybrid contribution 1.011 0.004 0.880 1.340 sum -6.913 -8.091 -8.619 13.694 Atomic orbital electron populations 1.20914 0.91177 1.02797 1.02672 1.19648 0.95889 0.91803 0.99123 1.20804 0.93956 0.96398 1.01934 1.21332 0.93931 0.98116 0.92860 1.20048 0.96801 0.89743 0.88442 1.44156 1.21719 1.54729 1.10258 1.20849 0.91611 0.92674 0.93080 1.19244 0.89426 1.40699 0.89062 0.91135 1.25090 0.96971 1.00525 0.96909 1.70066 1.24975 1.53732 1.05815 0.86231 0.83141 0.77824 0.79211 1.21356 1.21678 1.20382 1.20965 1.00003 0.91230 1.00151 1.20964 0.91871 0.98762 0.99414 1.21395 0.94422 0.89891 1.13100 1.96525 1.76215 1.28386 1.97989 0.90948 0.91505 0.91128 0.86140 0.92573 0.93186 0.95260 0.93366 0.98349 0.93597 0.85690 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.55 36.01 0.34 -1.26 16 2 C -0.06 -1.04 5.88 -104.59 -0.62 -1.66 16 3 C -0.11 -1.99 9.36 -39.59 -0.37 -2.36 16 4 C -0.06 -1.12 5.46 -104.62 -0.57 -1.69 16 5 C 0.18 3.53 5.83 -5.20 -0.03 3.50 16 6 N -0.59 -14.41 2.91 -182.51 -0.53 -14.94 16 7 C 0.16 3.93 9.01 59.85 0.54 4.47 16 8 C -0.25 -6.81 9.67 -15.06 -0.15 -6.95 16 9 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 10 C 0.00 0.11 5.13 -17.43 -0.09 0.02 16 11 N -0.90 -26.07 10.59 55.49 0.59 -25.49 16 12 Si 0.91 21.63 29.57 -169.99 -5.03 16.60 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C -0.10 -1.93 9.70 -39.59 -0.38 -2.31 16 17 C -0.09 -1.55 9.79 -39.56 -0.39 -1.94 16 18 C -0.11 -1.82 6.22 -39.52 -0.25 -2.07 16 19 Br -0.08 -1.08 31.79 -68.01 -2.16 -3.24 16 20 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 22 H 0.07 0.88 6.65 -51.93 -0.35 0.54 16 23 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 24 H 0.06 1.07 7.98 -51.93 -0.41 0.65 16 25 H 0.05 0.89 7.81 -51.93 -0.41 0.49 16 26 H 0.03 0.77 7.42 -51.93 -0.39 0.39 16 27 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 28 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 31 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 283.22 15.07 4.27 4.27 Total: -1.00 -28.91 283.22 -8.81 -37.72 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -3.99 Total: -2.68 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.96 Total: -12.24 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.06 Total: -40.43 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 35 Polarization: -1.08 SS G_CDS: -2.16 Total: -3.24 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.91 -8.81 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158167914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.745 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds