Wall clock time and date at job start Tue Mar 31 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38248 * 120.00366 * 2 1 4 4 C 1.38211 * 120.00820 * 180.26053 * 3 2 1 5 5 C 1.38265 * 120.02281 * 359.49127 * 4 3 2 6 6 C 1.50700 * 119.99427 * 180.25543 * 5 4 3 7 7 N 1.46507 * 109.47056 * 90.00172 * 6 5 4 8 8 C 1.46494 * 119.99525 * 269.99770 * 7 6 5 9 9 C 1.36935 * 120.00250 * 89.99629 * 7 6 5 10 10 H 1.08005 * 119.99717 * 22.37599 * 9 7 6 11 11 C 1.38808 * 120.00093 * 202.37696 * 9 7 6 12 12 N 1.31624 * 120.00071 * 11.32447 * 11 9 7 13 13 Si 1.86800 * 120.00087 * 191.33082 * 11 9 7 14 14 H 1.48495 * 109.47094 * 59.99784 * 13 11 9 15 15 H 1.48504 * 109.46915 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47119 * 299.99625 * 13 11 9 17 17 C 1.38194 * 120.00918 * 0.23106 * 5 4 3 18 18 C 1.38303 * 120.00754 * 179.73024 * 2 1 3 19 19 Br 1.89102 * 120.00936 * 359.97148 * 18 2 1 20 20 H 1.09003 * 109.46610 * 270.27148 * 1 2 3 21 21 H 1.08995 * 109.47489 * 30.27420 * 1 2 3 22 22 H 1.09003 * 109.47137 * 150.27803 * 1 2 3 23 23 H 1.08001 * 119.98958 * 359.97438 * 3 2 1 24 24 H 1.08004 * 119.98774 * 179.76873 * 4 3 2 25 25 H 1.08999 * 109.46598 * 209.99293 * 6 5 4 26 26 H 1.09000 * 109.47189 * 329.99893 * 6 5 4 27 27 H 1.09005 * 109.47240 * 94.20593 * 8 7 6 28 28 H 1.09001 * 109.47394 * 214.20363 * 8 7 6 29 29 H 1.09001 * 109.47697 * 334.20634 * 8 7 6 30 30 H 0.96997 * 119.99772 * 179.97438 * 12 11 9 31 31 H 1.07997 * 120.00630 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1973 -0.0054 5 6 4.2723 0.0003 -0.0003 6 6 5.7793 0.0012 -0.0004 7 7 6.2678 0.0075 1.3809 8 6 6.5112 1.2794 2.0658 9 6 6.4967 -1.1754 2.0316 10 1 6.6732 -2.0779 1.4652 11 6 6.5019 -1.2146 3.4191 12 7 6.0713 -0.1792 4.1083 13 14 7.1202 -2.7366 4.3082 14 1 8.5362 -2.9858 3.9369 15 1 7.0231 -2.5266 5.7751 16 1 6.2932 -3.9072 3.9195 17 6 3.5822 -1.1970 0.0055 18 6 2.1987 -1.1976 0.0056 19 35 1.2536 -2.8356 0.0142 20 1 -0.3633 0.0049 1.0277 21 1 -0.3634 0.8875 -0.5180 22 1 -0.3633 -0.8925 -0.5095 23 1 1.6582 2.1325 -0.0004 24 1 4.1202 2.1328 -0.0092 25 1 6.1431 -0.8909 -0.5102 26 1 6.1421 0.8891 -0.5181 27 1 5.6271 1.5584 2.6391 28 1 7.3619 1.1726 2.7389 29 1 6.7258 2.0536 1.3291 30 1 6.0747 -0.2068 5.0779 31 1 4.1227 -2.1319 0.0100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158194672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:13 Heat of formation + Delta-G solvation = 42.631745 kcal Electronic energy + Delta-G solvation = -14742.542322 eV Core-core repulsion = 12263.620391 eV Total energy + Delta-G solvation = -2478.921931 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.02958 -35.68868 -32.98118 -31.65368 -30.89275 -28.94408 -27.72921 -25.91083 -24.45251 -22.08828 -21.36424 -19.96206 -16.76367 -15.65972 -15.23327 -14.86557 -14.47218 -13.85068 -13.50626 -13.19761 -13.00478 -12.83479 -12.16746 -11.82056 -11.77787 -11.27302 -10.92423 -10.80645 -10.71288 -10.58916 -10.44524 -10.24548 -10.05098 -9.89384 -9.76047 -8.58356 -8.28962 -8.01405 -6.81981 -5.76749 -3.20852 1.63413 1.82895 2.03224 3.38262 3.43134 3.43773 4.10891 4.50031 5.11200 5.18428 5.39386 5.49498 5.59562 5.69731 5.77413 5.86947 5.95801 5.99210 6.09626 6.38827 6.49694 6.57291 6.71041 6.75532 6.83376 7.20706 7.34708 7.39175 7.69785 7.77706 8.34858 9.18805 9.80674 10.29285 11.27790 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.019272 B = 0.006824 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.530086 B = 4102.422349 C = 5014.616977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.083 4.083 3 C -0.119 4.119 4 C -0.096 4.096 5 C -0.078 4.078 6 C 0.180 3.820 7 N -0.589 5.589 8 C 0.163 3.837 9 C -0.256 4.256 10 H 0.070 0.930 11 C 0.005 3.995 12 N -0.903 5.903 13 Si 0.905 3.095 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.281 1.281 17 C -0.069 4.069 18 C -0.088 4.088 19 Br -0.072 7.072 20 H 0.070 0.930 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.120 0.880 24 H 0.119 0.881 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.047 0.953 29 H -0.002 1.002 30 H 0.254 0.746 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.872 -0.051 -9.750 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.138 4.138 4 C -0.116 4.116 5 C -0.083 4.083 6 C 0.053 3.947 7 N -0.310 5.310 8 C 0.018 3.982 9 C -0.385 4.385 10 H 0.088 0.912 11 C -0.194 4.194 12 N -0.547 5.547 13 Si 0.734 3.266 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.208 1.208 17 C -0.090 4.090 18 C -0.167 4.167 19 Br 0.013 6.987 20 H 0.088 0.912 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.138 0.862 24 H 0.137 0.863 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.016 0.984 30 H 0.064 0.936 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.165 -0.631 -9.516 13.938 hybrid contribution 0.333 -0.434 0.874 1.031 sum -9.832 -1.066 -8.642 13.134 Atomic orbital electron populations 1.20880 0.91223 1.02751 1.02480 1.19550 0.95827 0.91777 1.01362 1.20851 0.94316 0.96466 1.02207 1.21070 0.93679 0.98006 0.98813 1.21217 0.99671 0.91798 0.95585 1.20007 0.86454 0.99876 0.88409 1.44142 1.72940 1.03635 1.10239 1.20841 1.00225 0.84015 0.93089 1.19192 1.42196 0.88105 0.89028 0.91232 1.25069 0.99945 0.97498 0.96886 1.70058 1.48840 1.29871 1.05942 0.86331 0.78883 0.82671 0.78690 1.20930 1.21563 1.20756 1.20919 0.91168 0.99105 0.97810 1.21605 0.94695 0.90031 1.10383 1.96545 1.75839 1.28441 1.97846 0.91172 0.91718 0.91092 0.86201 0.86302 0.92679 0.93126 0.95304 0.93396 0.98382 0.93594 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.55 36.01 0.34 -1.16 16 2 C -0.08 -1.34 5.88 -104.59 -0.62 -1.96 16 3 C -0.12 -1.91 9.70 -39.59 -0.38 -2.29 16 4 C -0.10 -1.69 9.70 -39.58 -0.38 -2.08 16 5 C -0.08 -1.52 5.46 -104.63 -0.57 -2.09 16 6 C 0.18 3.64 5.83 -5.19 -0.03 3.61 16 7 N -0.59 -14.59 2.91 -182.50 -0.53 -15.12 16 8 C 0.16 3.96 9.01 59.84 0.54 4.50 16 9 C -0.26 -6.94 9.67 -15.06 -0.15 -7.09 16 10 H 0.07 1.84 7.84 -52.48 -0.41 1.43 16 11 C 0.00 0.14 5.13 -17.43 -0.09 0.05 16 12 N -0.90 -26.30 10.59 55.49 0.59 -25.71 16 13 Si 0.90 21.93 29.57 -169.99 -5.03 16.90 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C -0.07 -1.34 9.44 -39.56 -0.37 -1.72 16 18 C -0.09 -1.57 6.22 -39.52 -0.25 -1.81 16 19 Br -0.07 -1.12 31.79 -68.01 -2.16 -3.28 16 20 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 21 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 22 H 0.07 0.88 6.65 -51.93 -0.35 0.53 16 23 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 24 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 25 H 0.05 1.07 7.98 -51.93 -0.41 0.66 16 26 H 0.05 0.91 7.81 -51.93 -0.41 0.50 16 27 H 0.03 0.76 7.42 -51.93 -0.39 0.38 16 28 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 29 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 283.22 15.07 4.27 4.27 Total: -1.00 -29.34 283.22 -8.81 -38.15 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -3.99 Total: -3.18 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.96 Total: -12.03 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.06 Total: -40.84 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Atomic # 35 Polarization: -1.12 SS G_CDS: -2.16 Total: -3.28 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.34 -8.81 -38.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158194672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.782 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds