Wall clock time and date at job start Tue Mar 31 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 120.00434 * 2 1 4 4 C 1.38222 * 120.01155 * 179.97438 * 3 2 1 5 5 C 1.38269 * 120.01701 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99337 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 90.00286 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46943 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00162 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00023 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99532 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47381 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47001 * 119.99934 * 13 11 9 16 16 H 1.48497 * 109.47392 * 239.99632 * 13 11 9 17 17 C 1.38192 * 120.01027 * 0.23681 * 5 4 3 18 18 C 1.38302 * 120.00344 * 179.97438 * 2 1 3 19 19 Br 1.89091 * 120.01220 * 0.02562 * 18 2 1 20 20 H 1.09003 * 109.47348 * 89.99435 * 1 2 3 21 21 H 1.08998 * 109.47467 * 209.99808 * 1 2 3 22 22 H 1.08998 * 109.46863 * 329.99707 * 1 2 3 23 23 H 1.08000 * 119.99630 * 359.95874 * 3 2 1 24 24 H 1.07996 * 119.99308 * 180.02562 * 4 3 2 25 25 H 1.09001 * 109.47558 * 330.00449 * 6 5 4 26 26 H 1.08998 * 109.47216 * 210.00111 * 6 5 4 27 27 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 28 28 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 29 29 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 30 30 H 0.97001 * 119.99132 * 180.02562 * 12 11 9 31 31 H 1.08001 * 120.00648 * 179.72146 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2723 0.0001 0.0005 6 6 5.7793 0.0009 0.0005 7 7 6.2690 0.0011 1.3856 8 6 7.7375 0.0025 1.4248 9 6 8.2017 0.0021 2.8584 10 1 7.4782 0.0013 3.6603 11 6 9.5501 0.0037 3.1465 12 7 10.4310 0.0052 2.1700 13 14 10.1255 0.0039 4.9236 14 1 8.9460 0.0026 5.8259 15 1 10.9456 -1.2077 5.1785 16 1 10.9424 1.2172 5.1794 17 6 3.5821 -1.1971 -0.0049 18 6 2.1986 -1.1977 0.0005 19 35 1.2536 -2.8355 0.0005 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6583 2.1324 -0.0007 24 1 4.1202 2.1327 0.0010 25 1 6.1422 0.8911 -0.5132 26 1 6.1431 -0.8888 -0.5133 27 1 5.8939 -0.7805 1.9018 28 1 8.1152 -0.8870 0.9207 29 1 8.1135 0.8929 0.9210 30 1 11.3796 0.0060 2.3727 31 1 4.1226 -2.1321 -0.0095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164754560.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:15 Heat of formation + Delta-G solvation = -4.443076 kcal Electronic energy + Delta-G solvation = -13932.477047 eV Core-core repulsion = 11451.513799 eV Total energy + Delta-G solvation = -2480.963248 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.56259 -37.26580 -34.99265 -33.63405 -33.01486 -30.34216 -29.88309 -27.66941 -24.99373 -23.61576 -23.32694 -21.64211 -18.67562 -17.23636 -16.88567 -16.63245 -16.02012 -15.79430 -15.30955 -14.77859 -14.64805 -14.41792 -13.88262 -13.47663 -13.28573 -13.07265 -12.89467 -12.68584 -12.63498 -12.23123 -12.03010 -11.93432 -11.76477 -11.31573 -11.05474 -10.68116 -9.79773 -9.52921 -9.15244 -8.23855 -6.35048 0.13943 0.28558 0.63692 1.41285 1.41838 1.55922 2.39288 2.59242 3.09752 3.60732 3.79705 3.85162 3.98850 4.19194 4.32157 4.47066 4.66065 4.69681 4.78112 4.81236 4.94727 5.05882 5.15644 5.24197 5.27674 5.44747 5.57805 5.62240 5.87673 5.99324 6.38770 6.65280 6.85263 7.35955 8.87910 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.029142 B = 0.003682 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.572769 B = 7603.646196 C = 8031.151141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.113 4.113 4 C -0.087 4.087 5 C -0.084 4.084 6 C 0.098 3.902 7 N -0.681 5.681 8 C 0.207 3.793 9 C -0.536 4.536 10 H 0.063 0.937 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.973 3.027 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.093 4.093 18 C -0.105 4.105 19 Br -0.047 7.047 20 H 0.087 0.913 21 H 0.073 0.927 22 H 0.089 0.911 23 H 0.160 0.840 24 H 0.136 0.864 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.333 0.667 28 H -0.037 1.037 29 H 0.005 0.995 30 H 0.266 0.734 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.893 -2.221 -6.435 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.067 4.067 3 C -0.131 4.131 4 C -0.106 4.106 5 C -0.086 4.086 6 C -0.031 4.031 7 N -0.312 5.312 8 C 0.079 3.921 9 C -0.574 4.574 10 H 0.081 0.919 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.797 3.203 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.202 1.202 17 C -0.113 4.113 18 C -0.184 4.184 19 Br 0.039 6.961 20 H 0.106 0.894 21 H 0.092 0.908 22 H 0.107 0.893 23 H 0.177 0.823 24 H 0.154 0.846 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.150 0.850 28 H -0.019 1.019 29 H 0.023 0.977 30 H 0.074 0.926 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.107 -2.158 -6.410 24.077 hybrid contribution 1.420 -0.698 0.320 1.615 sum -21.687 -2.856 -6.091 22.706 Atomic orbital electron populations 1.21025 0.88445 1.04386 1.03889 1.20141 0.97945 0.91189 0.97454 1.21325 0.93456 0.98254 1.00103 1.21375 0.94806 0.97869 0.96504 1.19792 0.94755 0.93487 1.00533 1.20854 0.90602 1.00734 0.90878 1.60621 1.09578 1.49254 1.11700 1.19252 0.83140 0.93522 0.96154 1.21555 0.92196 1.50696 0.92994 0.91872 1.25938 0.96749 0.94498 1.02377 1.70094 1.01956 1.51486 1.33819 0.85277 0.78303 0.77824 0.78847 1.18768 1.20257 1.20247 1.21027 0.92588 0.98434 0.99257 1.21780 0.94257 0.92015 1.10371 1.96625 1.75065 1.26713 1.97736 0.89421 0.90844 0.89260 0.82271 0.84647 0.90683 0.95387 0.84985 1.01937 0.97708 0.92551 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.55 71.24 0.68 -1.15 16 2 C -0.07 -1.40 5.88 -19.85 -0.12 -1.52 16 3 C -0.11 -2.38 9.70 22.27 0.22 -2.16 16 4 C -0.09 -2.26 9.70 22.27 0.22 -2.04 16 5 C -0.08 -2.54 5.39 -19.87 -0.11 -2.65 16 6 C 0.10 3.53 5.81 85.55 0.50 4.03 16 7 N -0.68 -29.83 6.48 -521.98 -3.38 -33.21 16 8 C 0.21 11.18 5.44 85.56 0.47 11.65 16 9 C -0.54 -30.89 9.32 25.60 0.24 -30.65 16 10 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 11 C 0.00 0.15 5.46 84.66 0.46 0.62 16 12 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 13 Si 0.97 44.45 29.54 68.60 2.03 46.47 16 14 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 17 C -0.09 -2.62 9.44 22.29 0.21 -2.41 16 18 C -0.11 -2.62 6.22 22.31 0.14 -2.48 16 19 Br -0.05 -1.02 31.79 -20.37 -0.65 -1.67 16 20 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 21 H 0.07 1.15 6.64 -2.39 -0.02 1.14 16 22 H 0.09 1.03 8.09 -2.39 -0.02 1.01 16 23 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 24 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 25 H 0.07 2.67 8.09 -2.39 -0.02 2.65 16 26 H 0.03 1.01 8.08 -2.39 -0.02 0.99 16 27 H 0.33 14.19 8.72 -89.69 -0.78 13.40 16 28 H -0.04 -2.14 8.14 -2.39 -0.02 -2.16 16 29 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -63.66 288.67 1.53 -62.13 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.34 Total: 11.22 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 2.90 Total: -28.76 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -3.10 Total: -89.41 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 35 Polarization: -1.02 SS G_CDS: -0.65 Total: -1.67 kcal Total: -63.66 1.53 -62.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164754560.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.689 kcal (2) G-P(sol) polarization free energy of solvation -63.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds