Wall clock time and date at job start Tue Mar 31 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99708 * 2 1 4 4 O 1.20824 * 120.00115 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99862 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.47119 * 180.02562 * 5 3 2 7 7 C 1.36971 * 119.99472 * 277.31816 * 6 5 3 8 8 H 1.07998 * 120.00714 * 38.75290 * 7 6 5 9 9 C 1.38975 * 119.99723 * 218.75690 * 7 6 5 10 10 N 1.31415 * 119.99860 * 19.17668 * 9 7 6 11 11 Si 1.86804 * 119.99877 * 199.18348 * 9 7 6 12 12 H 1.48500 * 109.47490 * 89.99694 * 11 9 7 13 13 H 1.48497 * 109.46857 * 209.99895 * 11 9 7 14 14 H 1.48500 * 109.46837 * 329.99456 * 11 9 7 15 15 C 1.34773 * 120.00018 * 97.31466 * 6 5 3 16 16 O 1.21663 * 119.99784 * 186.03153 * 15 6 5 17 17 C 1.47106 * 120.00285 * 6.03473 * 15 6 5 18 18 C 1.36092 * 123.47061 * 328.30141 * 17 15 6 19 19 S 1.70447 * 110.80715 * 180.02562 * 18 17 15 20 20 C 1.75500 * 92.45456 * 359.97438 * 19 18 17 21 21 C 1.32759 * 110.59100 * 359.97438 * 20 19 18 22 22 C 1.50707 * 123.45659 * 179.73024 * 21 20 19 23 23 H 1.08995 * 109.47298 * 299.99441 * 1 2 3 24 24 H 1.09000 * 109.47242 * 60.00112 * 1 2 3 25 25 H 1.09001 * 109.46743 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47291 * 59.99688 * 5 3 2 27 27 H 1.09007 * 109.47130 * 299.99853 * 5 3 2 28 28 H 0.97000 * 119.99669 * 184.92369 * 10 9 7 29 29 H 1.07993 * 124.59716 * 359.97438 * 18 17 15 30 30 H 1.08001 * 124.70761 * 179.97438 * 20 19 18 31 31 H 1.08995 * 109.47043 * 90.02619 * 22 21 20 32 32 H 1.08992 * 109.47278 * 210.02863 * 22 21 20 33 33 H 1.09006 * 109.46838 * 330.02833 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.0304 3.3801 -1.1760 8 1 3.2690 3.2285 -1.9268 9 6 5.0597 4.2858 -1.4033 10 7 6.1672 4.2118 -0.6999 11 14 4.8687 5.6084 -2.7086 12 1 4.2691 6.8226 -2.0991 13 1 6.2011 5.9438 -3.2720 14 1 3.9842 5.1102 -3.7924 15 6 4.3157 3.2832 1.1581 16 8 4.5542 4.4761 1.1757 17 6 4.3919 2.4995 2.4006 18 6 3.6075 1.4167 2.6544 19 16 3.9642 0.7558 4.1845 20 6 5.2010 1.9603 4.5001 21 6 5.3077 2.7992 3.4767 22 6 6.2790 3.9511 3.4443 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.9557 0.7810 -0.8907 27 1 3.9564 0.7807 0.8892 28 1 6.8562 4.8860 -0.8078 29 1 2.8599 1.0292 1.9783 30 1 5.7933 2.0119 5.4017 31 1 7.2220 3.6191 3.0101 32 1 5.8651 4.7585 2.8403 33 1 6.4523 4.3088 4.4594 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176800388.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:00 Heat of formation + Delta-G solvation = -52.788413 kcal Electronic energy + Delta-G solvation = -20816.432075 eV Core-core repulsion = 17549.843808 eV Total energy + Delta-G solvation = -3266.588267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.25467 -38.80917 -36.56753 -35.93563 -34.21033 -32.21843 -30.37428 -28.65409 -27.21772 -26.41194 -24.99561 -22.86410 -21.05724 -20.26555 -18.20874 -17.25982 -17.15585 -16.87204 -16.07498 -16.03056 -15.32200 -14.67844 -14.21651 -13.75292 -13.55510 -13.22928 -13.16797 -12.58998 -12.48726 -12.45410 -11.94377 -11.76000 -11.55502 -11.44854 -11.26162 -10.94046 -10.84256 -10.64539 -10.49184 -10.47457 -10.20485 -10.06651 -8.94130 -8.42803 -8.17526 -7.78319 -7.32822 -6.20129 -3.92326 1.31507 2.00953 2.35839 2.65624 2.70455 3.05209 3.32419 3.39264 3.42182 4.18635 4.56799 4.87863 5.13928 5.16343 5.25743 5.31410 5.40284 5.49567 5.64271 5.70086 5.75409 5.90308 6.00718 6.08135 6.29009 6.32665 6.58788 6.69262 6.73955 7.15156 7.55627 8.10046 8.25449 8.88905 9.03600 9.49532 10.12469 10.87619 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.009156 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.715759 B = 3057.531375 C = 4901.312756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.369 6.369 3 C 0.429 3.571 4 O -0.482 6.482 5 C 0.092 3.908 6 N -0.424 5.424 7 C -0.337 4.337 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.824 5.824 11 Si 0.914 3.086 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.535 3.465 16 O -0.514 6.514 17 C -0.107 4.107 18 C -0.249 4.249 19 S 0.123 5.877 20 C -0.246 4.246 21 C -0.047 4.047 22 C -0.100 4.100 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.267 0.733 29 H 0.164 0.836 30 H 0.161 0.839 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 -9.830 6.733 12.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.287 6.287 3 C 0.268 3.732 4 O -0.366 6.366 5 C -0.035 4.035 6 N -0.145 5.145 7 C -0.464 4.464 8 H 0.100 0.900 9 C -0.142 4.142 10 N -0.457 5.457 11 Si 0.741 3.259 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.198 1.198 15 C 0.322 3.678 16 O -0.392 6.392 17 C -0.125 4.125 18 C -0.386 4.386 19 S 0.388 5.612 20 C -0.380 4.380 21 C -0.059 4.059 22 C -0.159 4.159 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.129 0.871 27 H 0.136 0.864 28 H 0.077 0.923 29 H 0.181 0.819 30 H 0.179 0.821 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.114 -10.069 7.540 13.235 hybrid contribution 0.088 1.723 -1.474 2.269 sum -4.026 -8.346 6.066 11.075 Atomic orbital electron populations 1.23159 0.77533 1.02969 1.02325 1.86547 1.22657 1.34539 1.84929 1.25304 0.93612 0.81245 0.73008 1.90686 1.66664 1.36163 1.43094 1.21703 0.85749 0.89791 1.06306 1.42882 1.59472 1.05693 1.06444 1.19048 1.08704 1.24064 0.94540 0.90018 1.25127 0.93064 0.98702 0.97261 1.69886 1.04586 1.31806 1.39458 0.86170 0.77252 0.82108 0.80405 1.20227 1.21205 1.19808 1.17077 0.83040 0.86690 0.80996 1.90568 1.50118 1.14500 1.83983 1.20834 0.97430 0.96105 0.98119 1.25834 1.07497 1.02796 1.02507 1.82572 1.34414 1.32155 1.12035 1.25126 1.06644 1.02002 1.04217 1.19953 0.96898 0.97465 0.91540 1.20628 0.97167 0.96514 1.01617 0.92326 0.92176 0.88580 0.87110 0.86367 0.92260 0.81928 0.82129 0.91218 0.88273 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.84 10.57 -39.26 -0.41 -6.26 16 3 C 0.43 8.36 6.06 36.01 0.22 8.58 16 4 O -0.48 -11.16 16.01 -18.75 -0.30 -11.46 16 5 C 0.09 1.85 5.49 -5.19 -0.03 1.82 16 6 N -0.42 -10.86 2.11 -117.42 -0.25 -11.11 16 7 C -0.34 -9.37 9.04 -14.98 -0.14 -9.51 16 8 H 0.08 2.25 7.90 -52.49 -0.41 1.84 16 9 C 0.07 1.94 4.36 -17.46 -0.08 1.86 16 10 N -0.82 -23.66 11.48 55.50 0.64 -23.02 16 11 Si 0.91 22.01 29.60 -169.99 -5.03 16.98 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 C 0.53 14.08 6.55 -12.66 -0.08 14.00 16 16 O -0.51 -15.22 12.39 5.22 0.06 -15.16 16 17 C -0.11 -2.32 5.57 -104.63 -0.58 -2.91 16 18 C -0.25 -4.56 8.40 29.96 0.25 -4.30 16 19 S 0.12 1.77 23.02 -107.50 -2.47 -0.70 16 20 C -0.25 -3.83 10.91 28.86 0.31 -3.51 16 21 C -0.05 -0.90 6.00 -104.05 -0.62 -1.52 16 22 C -0.10 -1.88 9.92 36.01 0.36 -1.52 16 23 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 24 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.11 2.04 8.10 -51.93 -0.42 1.62 16 27 H 0.12 2.15 4.32 -51.93 -0.22 1.93 16 28 H 0.27 7.36 8.32 -40.82 -0.34 7.02 16 29 H 0.16 2.90 4.05 -52.49 -0.21 2.69 16 30 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.10 2.22 5.94 -51.93 -0.31 1.91 16 33 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -33.73 296.71 -5.87 -39.60 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -3.25 Total: 2.18 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 0.68 Total: 4.48 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.39 Total: -34.13 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.65 Total: -32.88 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.47 Total: -0.70 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.73 -5.87 -39.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176800388.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.190 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds