Wall clock time and date at job start Tue Mar 31 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.36286 * 2 1 4 4 C 1.52122 * 109.36262 * 240.26471 * 2 1 3 5 5 C 1.50259 * 115.60007 * 169.04954 * 4 2 1 6 6 N 1.47151 * 111.21676 * 67.69751 * 5 4 2 7 7 C 1.36816 * 120.82365 * 89.77972 * 6 5 4 8 8 H 1.07990 * 120.00477 * 0.02562 * 7 6 5 9 9 C 1.38730 * 119.99429 * 180.02562 * 7 6 5 10 10 N 1.31645 * 120.00377 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99820 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47103 * 90.00414 * 11 9 7 13 13 H 1.48506 * 109.47081 * 210.00144 * 11 9 7 14 14 H 1.48498 * 109.47167 * 330.00146 * 11 9 7 15 15 C 1.39314 * 118.34246 * 269.79930 * 6 5 4 16 16 C 1.39294 * 119.55237 * 255.96299 * 15 6 5 17 17 C 1.38222 * 119.70505 * 174.97059 * 16 15 6 18 18 Cl 1.73599 * 119.64013 * 180.19837 * 17 16 15 19 19 C 1.38495 * 120.71790 * 0.17811 * 17 16 15 20 20 C 1.38531 * 120.00107 * 0.82194 * 19 17 16 21 21 C 1.38174 * 119.23900 * 359.63244 * 20 19 17 22 22 S 1.77689 * 120.54647 * 178.66400 * 21 20 19 23 23 H 1.09004 * 109.46824 * 300.00032 * 1 2 3 24 24 H 1.09000 * 109.47046 * 59.99961 * 1 2 3 25 25 H 1.08999 * 109.47323 * 180.02562 * 1 2 3 26 26 H 1.09003 * 108.28499 * 290.77501 * 4 2 1 27 27 H 1.09006 * 108.28458 * 47.66389 * 4 2 1 28 28 H 1.09001 * 109.14491 * 307.25872 * 5 4 2 29 29 H 1.08999 * 109.11394 * 188.12000 * 5 4 2 30 30 H 0.96989 * 120.00000 * 179.97438 * 10 9 7 31 31 H 1.08003 * 120.14285 * 354.95264 * 16 15 6 32 32 H 1.08002 * 120.00122 * 180.79460 * 19 17 16 33 33 H 1.07996 * 120.37874 * 179.61752 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8914 1.0284 0.0000 4 6 2.0344 -0.7118 -1.2462 5 6 3.5048 -0.5734 -1.5227 6 7 4.3061 -1.2735 -0.5063 7 6 4.6539 -2.5865 -0.6701 8 1 4.3404 -3.1221 -1.5539 9 6 5.4094 -3.2299 0.2994 10 7 5.7911 -2.5773 1.3771 11 14 5.8850 -5.0225 0.0756 12 1 7.1849 -5.1044 -0.6375 13 1 6.0082 -5.6717 1.4056 14 1 4.8398 -5.7164 -0.7190 15 6 4.7013 -0.5661 0.6269 16 6 6.0184 -0.1267 0.7379 17 6 6.3887 0.6639 1.8095 18 17 8.0295 1.2148 1.9434 19 6 5.4649 1.0216 2.7774 20 6 4.1576 0.5724 2.6867 21 6 3.7905 -0.2255 1.6200 22 16 2.1322 -0.8500 1.4880 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8014 -1.7725 -1.1521 27 1 1.4901 -0.3221 -2.1065 28 1 3.7709 0.4837 -1.5211 29 1 3.7248 -0.9950 -2.5035 30 1 6.3190 -3.0273 2.0550 31 1 6.7471 -0.4028 -0.0099 32 1 5.7638 1.6504 3.6030 33 1 3.4337 0.8426 3.4413 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177036985.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:46 Heat of formation + Delta-G solvation = 41.177003 kcal Electronic energy + Delta-G solvation = -18500.976517 eV Core-core repulsion = 15679.172061 eV Total energy + Delta-G solvation = -2821.804456 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.049 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.60317 -36.43737 -35.42023 -34.06795 -31.50854 -29.72575 -29.33846 -27.83140 -24.49278 -23.11530 -21.74085 -21.14941 -20.02280 -17.71322 -16.27250 -16.03278 -14.93921 -14.60998 -14.58248 -13.92391 -13.83353 -13.54198 -13.05612 -12.83276 -12.43867 -12.10970 -11.82338 -11.54556 -11.31239 -11.13101 -11.02347 -10.96944 -10.84412 -10.48399 -10.32732 -10.14430 -10.01645 -9.92276 -9.32654 -9.07777 -7.97436 -7.74011 -7.15189 -6.63371 -5.72747 -3.46127 2.00509 2.49849 2.70944 3.00565 3.29553 3.34696 3.37400 3.51981 4.27807 4.75765 5.01060 5.05200 5.26428 5.34900 5.58941 5.82685 5.83992 5.87496 5.99453 6.10951 6.13876 6.18740 6.37708 6.45233 6.49310 6.67899 6.78005 6.90974 7.14666 7.26326 7.44158 7.64039 7.68113 8.07415 9.01454 9.50423 9.89752 11.04888 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.012550 B = 0.010082 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.566123 B = 2776.689226 C = 4215.574592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.066 4.066 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.143 3.857 6 N -0.544 5.544 7 C -0.247 4.247 8 H 0.088 0.912 9 C -0.003 4.003 10 N -0.880 5.880 11 Si 0.920 3.080 12 H -0.286 1.286 13 H -0.288 1.288 14 H -0.279 1.279 15 C 0.328 3.672 16 C -0.074 4.074 17 C -0.009 4.009 18 Cl -0.112 7.112 19 C -0.170 4.170 20 C -0.067 4.067 21 C -0.135 4.135 22 S -0.157 6.157 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.263 0.737 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 6.843 -2.021 8.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.195 4.195 3 H 0.094 0.906 4 C -0.177 4.177 5 C 0.018 3.982 6 N -0.255 5.255 7 C -0.373 4.373 8 H 0.106 0.894 9 C -0.202 4.202 10 N -0.521 5.521 11 Si 0.749 3.251 12 H -0.213 1.213 13 H -0.214 1.214 14 H -0.204 1.204 15 C 0.224 3.776 16 C -0.099 4.099 17 C -0.037 4.037 18 Cl -0.084 7.084 19 C -0.192 4.192 20 C -0.089 4.089 21 C -0.250 4.250 22 S 0.078 5.922 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.292 5.904 -1.317 8.037 hybrid contribution 1.292 -0.316 -0.543 1.437 sum -4.000 5.587 -1.860 7.119 Atomic orbital electron populations 1.21581 0.92797 1.02364 1.01761 1.22968 0.98247 1.00957 0.97297 0.90611 1.21704 0.98553 1.01917 0.95519 1.20618 0.89327 0.95711 0.92571 1.41915 1.56432 1.09496 1.17692 1.19342 1.28879 0.84174 1.04935 0.89444 1.24906 1.00076 0.99041 0.96176 1.69685 1.38143 1.35140 1.09146 0.85997 0.78341 0.83574 0.77199 1.21327 1.21369 1.20399 1.16579 0.89313 0.85351 0.86369 1.21097 0.97245 0.94663 0.96916 1.20663 0.83467 1.01550 0.98042 1.98283 1.22918 1.89142 1.98049 1.20464 0.92938 1.06065 0.99757 1.20611 0.95105 0.96221 0.96966 1.21718 0.96518 1.07242 0.99560 1.85302 1.09518 1.63306 1.34108 0.92086 0.92022 0.92173 0.90775 0.92675 0.93770 0.91490 0.92483 0.86760 0.86923 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.12 37.16 0.34 -1.33 16 2 C -0.07 -1.10 2.87 -27.18 -0.08 -1.17 16 3 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 4 C -0.14 -2.26 4.66 -28.54 -0.13 -2.40 16 5 C 0.14 2.67 5.82 -5.05 -0.03 2.64 16 6 N -0.54 -12.56 2.16 -114.15 -0.25 -12.80 16 7 C -0.25 -6.19 9.85 -15.15 -0.15 -6.34 16 8 H 0.09 2.11 7.83 -52.49 -0.41 1.70 16 9 C 0.00 -0.08 5.42 -17.45 -0.09 -0.18 16 10 N -0.88 -23.91 9.27 55.49 0.51 -23.40 16 11 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 C 0.33 7.68 2.95 -83.79 -0.25 7.43 16 16 C -0.07 -1.71 7.66 -39.19 -0.30 -2.01 16 17 C -0.01 -0.19 6.31 -39.49 -0.25 -0.44 16 18 Cl -0.11 -2.08 28.93 -51.86 -1.50 -3.58 16 19 C -0.17 -3.36 9.83 -39.38 -0.39 -3.74 16 20 C -0.07 -1.35 9.85 -39.50 -0.39 -1.74 16 21 C -0.14 -3.00 5.69 -39.33 -0.22 -3.22 16 22 S -0.16 -3.22 20.81 -107.50 -2.24 -5.46 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 27 H 0.05 0.76 8.03 -51.93 -0.42 0.34 16 28 H 0.04 0.79 8.00 -51.93 -0.42 0.37 16 29 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.11 2.77 8.06 -52.48 -0.42 2.35 16 32 H 0.11 1.94 8.06 -52.49 -0.42 1.51 16 33 H 0.12 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 297.14 15.07 4.48 4.48 Total: -1.00 -27.19 297.14 -10.13 -37.33 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.18 Total: -0.13 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.94 Total: -12.50 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.27 Total: -36.20 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.24 Total: -5.46 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -1.50 Total: -3.58 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.19 -10.13 -37.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177036985.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.504 kcal (2) G-P(sol) polarization free energy of solvation -27.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds