Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.36490 * 2 1 4 4 C 1.52157 * 109.27217 * 119.69099 * 2 1 3 5 5 C 1.50458 * 115.46579 * 190.71907 * 4 2 1 6 6 N 1.47122 * 111.37916 * 292.21936 * 5 4 2 7 7 C 1.36811 * 120.82950 * 270.36155 * 6 5 4 8 8 H 1.08004 * 120.00498 * 359.97438 * 7 6 5 9 9 C 1.38732 * 119.99681 * 179.97438 * 7 6 5 10 10 N 1.31633 * 120.00312 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 120.00020 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47335 * 90.00156 * 11 9 7 13 13 H 1.48505 * 109.46942 * 210.00130 * 11 9 7 14 14 H 1.48504 * 109.47012 * 329.99924 * 11 9 7 15 15 C 1.39406 * 118.33541 * 90.34226 * 6 5 4 16 16 C 1.39258 * 119.59991 * 104.93187 * 15 6 5 17 17 C 1.38245 * 119.66645 * 185.02502 * 16 15 6 18 18 Cl 1.73600 * 119.65562 * 179.63924 * 17 16 15 19 19 C 1.38491 * 120.68161 * 359.66293 * 17 16 15 20 20 C 1.38516 * 120.03132 * 358.95116 * 19 17 16 21 21 C 1.38214 * 119.25826 * 0.72915 * 20 19 17 22 22 S 1.77661 * 120.47942 * 181.95245 * 21 20 19 23 23 H 1.08998 * 109.46287 * 179.74723 * 1 2 3 24 24 H 1.08999 * 109.46915 * 299.74540 * 1 2 3 25 25 H 1.09000 * 109.47088 * 59.74737 * 1 2 3 26 26 H 1.09008 * 108.28169 * 312.26958 * 4 2 1 27 27 H 1.08994 * 108.28113 * 69.34993 * 4 2 1 28 28 H 1.09000 * 109.10424 * 52.70847 * 5 4 2 29 29 H 1.09001 * 109.09780 * 171.79532 * 5 4 2 30 30 H 0.96999 * 120.00295 * 179.97438 * 10 9 7 31 31 H 1.07997 * 120.16765 * 5.29804 * 16 15 6 32 32 H 1.07997 * 119.98454 * 178.93187 * 19 17 16 33 33 H 1.08002 * 120.37282 * 180.71048 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8915 1.0284 0.0000 4 6 2.0322 -0.7114 1.2477 5 6 3.5056 -0.5762 1.5207 6 7 4.3057 -1.2815 0.5073 7 6 4.6492 -2.5952 0.6749 8 1 4.3329 -3.1275 1.5598 9 6 5.4038 -3.2436 -0.2920 10 7 5.7897 -2.5947 -1.3703 11 14 5.8722 -5.0375 -0.0637 12 1 4.8221 -5.9028 -0.6581 13 1 7.1696 -5.2999 -0.7370 14 1 5.9975 -5.3357 1.3857 15 6 4.7048 -0.5778 -0.6280 16 6 6.0274 -0.1588 -0.7481 17 6 6.4012 0.6278 -1.8217 18 17 8.0480 1.1578 -1.9660 19 6 5.4753 0.9978 -2.7829 20 6 4.1641 0.5617 -2.6866 21 6 3.7924 -0.2300 -1.6164 22 16 2.1325 -0.8501 -1.4879 23 1 -0.3632 -1.0277 -0.0045 24 1 -0.3633 0.5099 0.8923 25 1 -0.3633 0.5178 -0.8877 26 1 1.4879 -0.3198 2.1071 27 1 1.8005 -1.7723 1.1530 28 1 3.7740 0.4802 1.5150 29 1 3.7263 -0.9948 2.5026 30 1 6.3177 -3.0480 -2.0462 31 1 6.7584 -0.4506 -0.0086 32 1 5.7757 1.6269 -3.6077 33 1 3.4403 0.8374 -3.4392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177037004.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = 41.150748 kcal Electronic energy + Delta-G solvation = -18500.200391 eV Core-core repulsion = 15678.394796 eV Total energy + Delta-G solvation = -2821.805595 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.049 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.59716 -36.42755 -35.41304 -34.06901 -31.51738 -29.71444 -29.32900 -27.83127 -24.49671 -23.10475 -21.74064 -21.14758 -20.02410 -17.71106 -16.27440 -16.03070 -14.94081 -14.60425 -14.57723 -13.92273 -13.83084 -13.53633 -13.05885 -12.82605 -12.43860 -12.10552 -11.82024 -11.54557 -11.30852 -11.13580 -11.02634 -10.95730 -10.84772 -10.48598 -10.32870 -10.13958 -10.02184 -9.92102 -9.32710 -9.08605 -7.98605 -7.73719 -7.14407 -6.63163 -5.72587 -3.46929 2.01177 2.50542 2.71198 3.01427 3.29887 3.34051 3.36898 3.52221 4.27322 4.76409 5.00653 5.05389 5.25928 5.34745 5.59076 5.82761 5.84609 5.87945 6.00085 6.10765 6.13946 6.18744 6.37467 6.45288 6.50008 6.68650 6.77968 6.91738 7.15337 7.27251 7.43379 7.64793 7.68389 8.07089 9.00616 9.49698 9.88930 11.03882 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.010061 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.065569 B = 2782.353228 C = 4219.918456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.067 4.067 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.142 3.858 6 N -0.543 5.543 7 C -0.246 4.246 8 H 0.088 0.912 9 C -0.003 4.003 10 N -0.879 5.879 11 Si 0.919 3.081 12 H -0.285 1.285 13 H -0.288 1.288 14 H -0.279 1.279 15 C 0.325 3.675 16 C -0.070 4.070 17 C -0.010 4.010 18 Cl -0.112 7.112 19 C -0.170 4.170 20 C -0.067 4.067 21 C -0.136 4.136 22 S -0.157 6.157 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.263 0.737 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.814 6.817 2.034 8.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.195 4.195 3 H 0.094 0.906 4 C -0.177 4.177 5 C 0.017 3.983 6 N -0.254 5.254 7 C -0.373 4.373 8 H 0.106 0.894 9 C -0.202 4.202 10 N -0.520 5.520 11 Si 0.748 3.252 12 H -0.212 1.212 13 H -0.214 1.214 14 H -0.204 1.204 15 C 0.221 3.779 16 C -0.096 4.096 17 C -0.038 4.038 18 Cl -0.084 7.084 19 C -0.192 4.192 20 C -0.090 4.090 21 C -0.251 4.251 22 S 0.078 5.922 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.211 5.878 1.336 7.968 hybrid contribution 1.267 -0.328 0.538 1.415 sum -3.945 5.549 1.874 7.062 Atomic orbital electron populations 1.21582 0.92816 1.02360 1.01754 1.22980 0.98249 1.00970 0.97313 0.90601 1.21751 0.98543 1.01905 0.95524 1.20651 0.89352 0.95663 0.92612 1.41943 1.56262 1.09409 1.17742 1.19350 1.28872 0.84102 1.04960 0.89433 1.24907 1.00071 0.99044 0.96206 1.69701 1.38065 1.35032 1.09215 0.86005 0.77787 0.83751 0.77616 1.21151 1.21428 1.20432 1.16590 0.89383 0.85557 0.86416 1.21069 0.97093 0.94539 0.96869 1.20659 0.83305 1.01806 0.98067 1.98282 1.22375 1.89780 1.97966 1.20453 0.92853 1.06069 0.99857 1.20612 0.95047 0.96399 0.96919 1.21680 0.96469 1.07454 0.99534 1.85309 1.09329 1.63424 1.34102 0.92178 0.92027 0.92096 0.92603 0.90784 0.93762 0.91511 0.92476 0.86733 0.86953 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.12 37.16 0.34 -1.33 16 2 C -0.07 -1.10 2.87 -27.16 -0.08 -1.18 16 3 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 4 C -0.14 -2.27 4.69 -28.43 -0.13 -2.40 16 5 C 0.14 2.66 5.81 -4.97 -0.03 2.63 16 6 N -0.54 -12.52 2.17 -114.06 -0.25 -12.77 16 7 C -0.25 -6.17 9.85 -15.15 -0.15 -6.32 16 8 H 0.09 2.11 7.83 -52.48 -0.41 1.70 16 9 C 0.00 -0.09 5.41 -17.45 -0.09 -0.18 16 10 N -0.88 -23.85 9.21 55.49 0.51 -23.34 16 11 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 C 0.32 7.60 3.01 -83.78 -0.25 7.35 16 16 C -0.07 -1.62 7.57 -39.20 -0.30 -1.92 16 17 C -0.01 -0.22 6.31 -39.49 -0.25 -0.47 16 18 Cl -0.11 -2.09 28.93 -51.86 -1.50 -3.59 16 19 C -0.17 -3.36 9.83 -39.39 -0.39 -3.75 16 20 C -0.07 -1.36 9.85 -39.49 -0.39 -1.75 16 21 C -0.14 -3.02 5.69 -39.33 -0.22 -3.25 16 22 S -0.16 -3.21 20.82 -107.50 -2.24 -5.45 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.76 8.03 -51.92 -0.42 0.35 16 27 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 28 H 0.04 0.79 8.00 -51.93 -0.42 0.37 16 29 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.11 2.78 8.06 -52.49 -0.42 2.36 16 32 H 0.11 1.94 8.06 -52.49 -0.42 1.51 16 33 H 0.12 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 297.05 15.07 4.48 4.48 Total: -1.00 -27.15 297.05 -10.14 -37.29 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.18 Total: -0.08 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.94 Total: -12.57 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.26 Total: -36.11 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.24 Total: -5.45 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -1.50 Total: -3.59 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.15 -10.14 -37.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177037004.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.444 kcal (2) G-P(sol) polarization free energy of solvation -27.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds