Wall clock time and date at job start Tue Mar 31 2020 05:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46727 * 2 1 4 4 N 1.46501 * 109.47209 * 239.99907 * 2 1 3 5 5 C 1.36941 * 119.99890 * 54.54825 * 4 2 1 6 6 H 1.08004 * 119.99542 * 359.97438 * 5 4 2 7 7 C 1.38805 * 119.99997 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00165 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00048 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47040 * 60.00126 * 9 7 5 11 11 H 1.48504 * 109.47219 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47147 * 300.00261 * 9 7 5 13 13 C 1.50702 * 109.46960 * 120.00273 * 2 1 3 14 14 C 1.38240 * 120.00120 * 244.86308 * 13 2 1 15 15 C 1.38225 * 120.00947 * 179.74604 * 14 13 2 16 16 C 1.38254 * 120.01820 * 0.27512 * 15 14 13 17 17 C 1.38196 * 120.01126 * 359.97438 * 16 15 14 18 18 C 1.38300 * 120.00796 * 65.13818 * 13 2 1 19 19 Br 1.89096 * 120.01111 * 359.97438 * 18 13 2 20 20 H 1.08994 * 109.47636 * 300.43790 * 1 2 3 21 21 H 1.09001 * 109.47255 * 60.44283 * 1 2 3 22 22 H 1.09010 * 109.46853 * 180.43776 * 1 2 3 23 23 H 1.09003 * 109.46816 * 176.04250 * 3 2 1 24 24 H 1.08995 * 109.47380 * 296.04131 * 3 2 1 25 25 H 1.09000 * 109.47110 * 56.04410 * 3 2 1 26 26 H 0.96993 * 120.00178 * 234.54412 * 4 2 1 27 27 H 0.96998 * 120.00084 * 179.97438 * 8 7 5 28 28 H 1.08001 * 119.99644 * 0.02562 * 14 13 2 29 29 H 1.08001 * 119.98762 * 180.25268 * 15 14 13 30 30 H 1.08000 * 119.99637 * 179.97438 * 16 15 14 31 31 H 1.08003 * 120.00435 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.5981 -0.2914 -2.4368 6 1 0.9063 0.5323 -2.5334 7 6 2.0612 -0.9454 -3.5702 8 7 2.9047 -1.9489 -3.4525 9 14 1.4873 -0.4013 -5.2625 10 1 1.8720 1.0158 -5.4837 11 1 2.1225 -1.2547 -6.2987 12 1 0.0108 -0.5329 -5.3505 13 6 2.0323 -0.7105 1.2305 14 6 2.7422 -0.0130 2.1900 15 6 3.1984 -0.6634 3.3211 16 6 2.9500 -2.0128 3.4907 17 6 2.2449 -2.7119 2.5295 18 6 1.7881 -2.0615 1.3972 19 35 0.8233 -3.0176 0.0816 20 1 -0.3634 0.5206 0.8860 21 1 -0.3634 0.5069 -0.8939 22 1 -0.3633 -1.0277 0.0079 23 1 3.1276 1.4434 0.0709 24 1 1.7357 1.9355 -0.9233 25 1 1.6198 1.9764 0.8524 26 1 2.6394 -1.4306 -1.1094 27 1 3.2280 -2.4062 -4.2445 28 1 2.9364 1.0411 2.0580 29 1 3.7494 -0.1172 4.0725 30 1 3.3070 -2.5206 4.3745 31 1 2.0513 -3.7662 2.6619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181512436.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:00 Heat of formation + Delta-G solvation = 46.620266 kcal Electronic energy + Delta-G solvation = -15170.242204 eV Core-core repulsion = 12691.493229 eV Total energy + Delta-G solvation = -2478.748976 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42996 -36.11550 -32.45549 -31.91363 -29.95834 -28.68991 -28.25146 -26.53953 -24.17271 -22.26605 -21.68942 -18.93676 -17.18768 -16.29711 -15.28368 -14.80620 -14.31754 -13.75225 -13.60617 -13.18313 -13.11375 -12.45460 -12.32628 -11.63759 -11.41358 -11.20075 -11.00586 -10.82019 -10.71791 -10.60917 -10.38958 -10.02998 -9.79123 -9.58905 -9.14349 -8.63203 -8.56364 -8.13144 -6.78249 -5.63412 -2.90629 1.43532 1.58020 2.29848 3.49158 3.54004 3.54435 3.91652 4.68089 5.04077 5.11116 5.17457 5.50344 5.61385 5.69775 5.78683 5.87048 6.02424 6.12819 6.21976 6.34241 6.43798 6.58090 6.61326 6.70804 6.73848 6.88144 7.03103 7.14137 7.26391 7.80654 8.52755 9.65042 10.20834 10.58040 11.58531 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.008513 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.527435 B = 3288.318636 C = 3895.973922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.228 3.772 3 C -0.154 4.154 4 N -0.708 5.708 5 C -0.225 4.225 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.928 5.928 9 Si 0.899 3.101 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.288 1.288 13 C -0.040 4.040 14 C -0.114 4.114 15 C -0.114 4.114 16 C -0.128 4.128 17 C -0.099 4.099 18 C -0.081 4.081 19 Br -0.017 7.017 20 H 0.033 0.967 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.038 0.962 26 H 0.387 0.613 27 H 0.252 0.748 28 H 0.133 0.867 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 -0.182 13.822 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.136 3.864 3 C -0.214 4.214 4 N -0.350 5.350 5 C -0.356 4.356 6 H 0.087 0.913 7 C -0.207 4.207 8 N -0.576 5.576 9 Si 0.731 3.269 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.215 1.215 13 C -0.043 4.043 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.147 4.147 17 C -0.119 4.119 18 C -0.161 4.161 19 Br 0.070 6.930 20 H 0.052 0.948 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.223 0.777 27 H 0.062 0.938 28 H 0.150 0.850 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.753 -0.501 13.141 13.435 hybrid contribution 0.204 0.258 -0.679 0.755 sum -2.548 -0.243 12.461 12.722 Atomic orbital electron populations 1.22465 0.96495 1.03088 1.00124 1.18541 0.92746 0.90776 0.84300 1.22378 1.00573 0.97783 1.00665 1.42473 1.54217 1.38839 0.99483 1.19029 1.21166 1.12128 0.83287 0.91294 1.24641 1.00206 0.98602 0.97229 1.69665 1.35760 1.24182 1.27988 0.86396 0.77988 0.77579 0.84985 1.21523 1.21903 1.21523 1.20235 0.95221 0.92164 0.96639 1.21241 0.97823 1.00656 0.93574 1.21185 0.99691 0.94750 0.97653 1.21031 0.99937 0.94627 0.99121 1.21081 0.98052 0.99865 0.92917 1.21946 1.03171 0.95194 0.95829 1.96762 1.71751 1.72030 1.52448 0.94779 0.92007 0.91197 0.93121 0.91961 0.94265 0.77737 0.93766 0.84973 0.86051 0.85928 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.11 37.16 0.30 -2.82 16 2 C 0.23 4.58 0.72 -132.97 -0.10 4.48 16 3 C -0.15 -2.83 7.24 37.16 0.27 -2.56 16 4 N -0.71 -17.36 3.63 -48.30 -0.18 -17.53 16 5 C -0.22 -6.05 8.65 -15.06 -0.13 -6.18 16 6 H 0.07 1.81 6.67 -52.48 -0.35 1.46 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 9 Si 0.90 22.46 29.55 -169.99 -5.02 17.43 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C -0.04 -0.73 4.80 -104.60 -0.50 -1.23 16 14 C -0.11 -1.75 8.97 -39.59 -0.36 -2.10 16 15 C -0.11 -1.49 10.05 -39.58 -0.40 -1.89 16 16 C -0.13 -1.66 10.05 -39.59 -0.40 -2.05 16 17 C -0.10 -1.48 9.79 -39.56 -0.39 -1.87 16 18 C -0.08 -1.46 5.86 -39.52 -0.23 -1.69 16 19 Br -0.02 -0.32 28.00 -68.01 -1.90 -2.23 16 20 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.06 1.24 6.97 -51.93 -0.36 0.88 16 22 H 0.07 1.38 5.09 -51.92 -0.26 1.11 16 23 H 0.05 0.92 7.50 -51.93 -0.39 0.54 16 24 H 0.06 1.22 7.48 -51.93 -0.39 0.83 16 25 H 0.04 0.60 7.54 -51.93 -0.39 0.21 16 26 H 0.39 10.33 6.61 -40.82 -0.27 10.06 16 27 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.13 1.83 5.92 -52.49 -0.31 1.52 16 29 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 269.70 15.07 4.06 4.06 Total: -1.00 -29.53 269.70 -7.89 -37.42 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -3.55 Total: 6.14 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -2.02 Total: -18.32 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.55 Total: -44.51 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -1.90 Total: -2.23 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.53 -7.89 -37.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181512436.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.044 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds