Wall clock time and date at job start Tue Mar 31 2020 05:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46727 * 2 1 4 4 N 1.46501 * 109.47209 * 239.99907 * 2 1 3 5 5 C 1.36941 * 119.99890 * 54.54825 * 4 2 1 6 6 H 1.08004 * 119.99542 * 359.97438 * 5 4 2 7 7 C 1.38805 * 119.99997 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00165 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00048 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47040 * 60.00126 * 9 7 5 11 11 H 1.48504 * 109.47219 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47147 * 300.00261 * 9 7 5 13 13 C 1.50702 * 109.46960 * 120.00273 * 2 1 3 14 14 C 1.38240 * 120.00120 * 244.86308 * 13 2 1 15 15 C 1.38225 * 120.00947 * 179.74604 * 14 13 2 16 16 C 1.38254 * 120.01820 * 0.27512 * 15 14 13 17 17 C 1.38196 * 120.01126 * 359.97438 * 16 15 14 18 18 C 1.38300 * 120.00796 * 65.13818 * 13 2 1 19 19 Br 1.89096 * 120.01111 * 359.97438 * 18 13 2 20 20 H 1.08994 * 109.47636 * 300.43790 * 1 2 3 21 21 H 1.09001 * 109.47255 * 60.44283 * 1 2 3 22 22 H 1.09010 * 109.46853 * 180.43776 * 1 2 3 23 23 H 1.09003 * 109.46816 * 176.04250 * 3 2 1 24 24 H 1.08995 * 109.47380 * 296.04131 * 3 2 1 25 25 H 1.09000 * 109.47110 * 56.04410 * 3 2 1 26 26 H 0.96993 * 120.00178 * 234.54412 * 4 2 1 27 27 H 0.96998 * 120.00084 * 179.97438 * 8 7 5 28 28 H 1.08001 * 119.99644 * 0.02562 * 14 13 2 29 29 H 1.08001 * 119.98762 * 180.25268 * 15 14 13 30 30 H 1.08000 * 119.99637 * 179.97438 * 16 15 14 31 31 H 1.08003 * 120.00435 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.5981 -0.2914 -2.4368 6 1 0.9063 0.5323 -2.5334 7 6 2.0612 -0.9454 -3.5702 8 7 2.9047 -1.9489 -3.4525 9 14 1.4873 -0.4013 -5.2625 10 1 1.8720 1.0158 -5.4837 11 1 2.1225 -1.2547 -6.2987 12 1 0.0108 -0.5329 -5.3505 13 6 2.0323 -0.7105 1.2305 14 6 2.7422 -0.0130 2.1900 15 6 3.1984 -0.6634 3.3211 16 6 2.9500 -2.0128 3.4907 17 6 2.2449 -2.7119 2.5295 18 6 1.7881 -2.0615 1.3972 19 35 0.8233 -3.0176 0.0816 20 1 -0.3634 0.5206 0.8860 21 1 -0.3634 0.5069 -0.8939 22 1 -0.3633 -1.0277 0.0079 23 1 3.1276 1.4434 0.0709 24 1 1.7357 1.9355 -0.9233 25 1 1.6198 1.9764 0.8524 26 1 2.6394 -1.4306 -1.1094 27 1 3.2280 -2.4062 -4.2445 28 1 2.9364 1.0411 2.0580 29 1 3.7494 -0.1172 4.0725 30 1 3.3070 -2.5206 4.3745 31 1 2.0513 -3.7662 2.6619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181512436.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:00 Heat of formation + Delta-G solvation = 30.023008 kcal Electronic energy + Delta-G solvation = -15170.961915 eV Core-core repulsion = 12691.493229 eV Total energy + Delta-G solvation = -2479.468687 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.69351 -37.62989 -34.36804 -33.16349 -31.48544 -30.15523 -29.71926 -28.02502 -26.06401 -23.66891 -22.86443 -20.41870 -19.07065 -17.66804 -16.80937 -16.14189 -15.85853 -15.37433 -15.18843 -14.63890 -14.33833 -14.03778 -13.73711 -13.19682 -13.01088 -12.77288 -12.63429 -12.53856 -12.32728 -12.19817 -11.91923 -11.56631 -11.49829 -11.27370 -10.93312 -10.34341 -9.76211 -9.41186 -8.76327 -7.77567 -5.02199 0.26807 0.42518 0.98648 1.49224 1.50584 1.55872 2.62494 2.79431 3.54123 3.79470 3.92666 4.10693 4.20319 4.44339 4.45865 4.50869 4.67715 4.82226 4.90610 5.03460 5.10745 5.14816 5.18052 5.34576 5.46314 5.49202 5.60336 5.67792 5.78749 6.01177 6.41578 7.49629 8.24813 8.50698 9.45063 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.008513 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.527435 B = 3288.318636 C = 3895.973922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.219 3.781 3 C -0.146 4.146 4 N -0.716 5.716 5 C -0.209 4.209 6 H 0.072 0.928 7 C -0.073 4.073 8 N -0.962 5.962 9 Si 0.955 3.045 10 H -0.282 1.282 11 H -0.301 1.301 12 H -0.285 1.285 13 C -0.068 4.068 14 C -0.119 4.119 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.106 4.106 18 C -0.102 4.102 19 Br -0.049 7.049 20 H 0.059 0.941 21 H 0.044 0.956 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.374 0.626 27 H 0.244 0.756 28 H 0.146 0.854 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 0.906 16.354 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.129 3.871 3 C -0.205 4.205 4 N -0.356 5.356 5 C -0.341 4.341 6 H 0.090 0.910 7 C -0.265 4.265 8 N -0.614 5.614 9 Si 0.786 3.214 10 H -0.209 1.209 11 H -0.228 1.228 12 H -0.212 1.212 13 C -0.071 4.071 14 C -0.138 4.138 15 C -0.122 4.122 16 C -0.135 4.135 17 C -0.126 4.126 18 C -0.182 4.182 19 Br 0.037 6.963 20 H 0.078 0.922 21 H 0.064 0.936 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.207 0.793 27 H 0.052 0.948 28 H 0.164 0.836 29 H 0.179 0.821 30 H 0.180 0.820 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.403 0.630 15.708 15.903 hybrid contribution 0.096 -0.042 -1.254 1.258 sum -2.307 0.588 14.454 14.649 Atomic orbital electron populations 1.22393 0.96153 1.02720 1.00471 1.18772 0.93015 0.91514 0.83784 1.22261 1.00486 0.96611 1.01168 1.42609 1.53916 1.38758 1.00304 1.19315 1.19455 1.10934 0.84427 0.91020 1.25275 1.01449 0.99477 1.00258 1.69821 1.37782 1.25825 1.27955 0.85483 0.77426 0.77126 0.81373 1.20858 1.22817 1.21221 1.20148 0.97577 0.92520 0.96833 1.21471 0.97226 1.01411 0.93703 1.21646 0.98348 0.94945 0.97263 1.21511 0.97904 0.94725 0.99358 1.21359 0.98042 1.00795 0.92428 1.22030 1.04519 0.95315 0.96313 1.96718 1.72668 1.72769 1.54159 0.92223 0.93643 0.92064 0.93366 0.93857 0.90851 0.79273 0.94755 0.83601 0.82102 0.82037 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.01 8.11 71.98 0.58 -5.42 16 2 C 0.22 8.64 0.72 2.86 0.00 8.64 16 3 C -0.15 -5.12 7.24 71.98 0.52 -4.60 16 4 N -0.72 -35.48 3.63 -306.74 -1.11 -36.59 16 5 C -0.21 -11.39 8.65 84.03 0.73 -10.66 16 6 H 0.07 3.79 6.67 -2.91 -0.02 3.78 16 7 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 8 N -0.96 -59.06 13.06 21.65 0.28 -58.78 16 9 Si 0.95 47.07 29.55 68.60 2.03 49.10 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 13 C -0.07 -2.39 4.80 -19.85 -0.10 -2.48 16 14 C -0.12 -3.27 8.97 22.27 0.20 -3.07 16 15 C -0.10 -2.21 10.05 22.27 0.22 -1.99 16 16 C -0.12 -2.49 10.05 22.26 0.22 -2.26 16 17 C -0.11 -2.93 9.79 22.29 0.22 -2.72 16 18 C -0.10 -3.55 5.86 22.31 0.13 -3.42 16 19 Br -0.05 -1.96 28.00 -20.37 -0.57 -2.53 16 20 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 21 H 0.04 1.82 6.97 -2.39 -0.02 1.80 16 22 H 0.06 2.43 5.09 -2.38 -0.01 2.42 16 23 H 0.05 1.69 7.50 -2.39 -0.02 1.67 16 24 H 0.04 1.65 7.48 -2.39 -0.02 1.63 16 25 H 0.07 2.04 7.54 -2.39 -0.02 2.02 16 26 H 0.37 20.42 6.61 -92.71 -0.61 19.81 16 27 H 0.24 14.78 8.31 -92.71 -0.77 14.01 16 28 H 0.15 3.50 5.92 -2.91 -0.02 3.48 16 29 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -64.88 269.70 4.35 -60.52 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.53 Total: 19.96 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 3.20 Total: -31.69 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -0.83 Total: -95.37 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Atomic # 35 Polarization: -1.96 SS G_CDS: -0.57 Total: -2.53 kcal Total: -64.88 4.35 -60.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181512436.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.548 kcal (2) G-P(sol) polarization free energy of solvation -64.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds