Wall clock time and date at job start Tue Mar 31 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34706 * 116.99863 * 2 1 4 4 O 1.21470 * 120.00209 * 0.02562 * 3 2 1 5 5 C 1.47751 * 120.00031 * 179.97438 * 3 2 1 6 6 C 1.39684 * 120.10575 * 0.02562 * 5 3 2 7 7 C 1.38137 * 120.00357 * 180.02562 * 6 5 3 8 8 Cl 1.73605 * 119.89053 * 180.02562 * 7 6 5 9 9 C 1.38313 * 120.21808 * 359.97438 * 7 6 5 10 10 C 1.39076 * 120.20860 * 359.97438 * 9 7 6 11 11 N 1.39567 * 120.00375 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99838 * 144.86255 * 11 10 9 13 13 O 1.21737 * 120.00189 * 4.59317 * 12 11 10 14 14 C 1.46177 * 119.99837 * 184.60185 * 12 11 10 15 15 H 1.08004 * 119.99783 * 5.02564 * 14 12 11 16 16 C 1.40121 * 120.00165 * 185.02721 * 14 12 11 17 17 N 1.30640 * 119.99978 * 354.96517 * 16 14 12 18 18 Si 1.86797 * 119.99943 * 174.96419 * 16 14 12 19 19 H 1.48500 * 109.47197 * 95.00288 * 18 16 14 20 20 H 1.48506 * 109.47051 * 215.00076 * 18 16 14 21 21 H 1.48498 * 109.47461 * 334.99554 * 18 16 14 22 22 C 1.38801 * 119.99582 * 0.02562 * 10 9 7 23 23 H 1.08999 * 109.47436 * 59.99499 * 1 2 3 24 24 H 1.09003 * 109.47304 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47420 * 299.99234 * 1 2 3 26 26 H 1.08008 * 119.99868 * 0.03335 * 6 5 3 27 27 H 1.08003 * 119.89919 * 180.02562 * 9 7 6 28 28 H 0.96997 * 119.99918 * 324.85958 * 11 10 9 29 29 H 0.96993 * 120.00318 * 179.97438 * 17 16 14 30 30 H 1.07999 * 120.11030 * 179.72593 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3020 0.1076 0.0006 7 6 5.6813 0.1824 0.0016 8 17 6.6267 -1.2737 0.0010 9 6 6.3117 1.4135 0.0022 10 6 5.5608 2.5841 0.0011 11 7 6.2014 3.8241 0.0011 12 6 5.6631 4.8606 -0.6715 13 8 4.5776 4.7396 -1.2091 14 6 6.3829 6.1301 -0.7557 15 1 7.3801 6.2134 -0.3495 16 6 5.7790 7.2390 -1.3634 17 7 4.6143 7.1133 -1.9415 18 14 6.6395 8.8969 -1.3468 19 1 7.4055 9.0697 -2.6072 20 1 5.6283 9.9782 -1.2299 21 1 7.5685 8.9609 -0.1901 22 6 4.1743 2.5192 0.0000 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 3.8134 -0.8557 -0.0004 27 1 7.3904 1.4660 0.0026 28 1 7.0338 3.9400 0.4852 29 1 4.1961 7.8809 -2.3618 30 1 3.5894 3.4271 0.0037 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186757517.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:00 Heat of formation + Delta-G solvation = -125.962950 kcal Electronic energy + Delta-G solvation = -19162.523678 eV Core-core repulsion = 15754.885524 eV Total energy + Delta-G solvation = -3407.638154 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.78757 -40.74261 -38.96491 -37.65647 -37.35286 -35.42390 -34.59401 -32.28138 -30.96986 -28.77561 -28.23701 -25.32724 -24.14906 -22.27112 -21.72512 -19.60291 -19.11744 -18.32812 -17.59892 -17.46861 -17.19336 -16.89935 -16.32429 -15.90156 -15.59949 -14.88165 -14.75598 -14.57900 -14.40152 -14.11616 -13.29225 -13.18381 -13.12232 -12.88850 -12.86654 -12.69827 -12.48902 -12.14881 -12.03388 -11.87876 -11.71783 -11.17469 -10.93537 -10.07313 -9.84611 -9.05209 -8.39454 -6.97032 -0.50792 0.12955 0.95904 1.30440 1.40281 1.42141 1.56363 1.58320 2.19743 2.31070 2.60160 2.80701 3.50411 3.58013 3.96809 4.05801 4.09241 4.27292 4.29763 4.31178 4.39593 4.68296 4.94480 5.07735 5.15685 5.23296 5.26915 5.35980 5.73264 6.11142 6.15154 6.57871 6.76144 7.25841 8.29629 8.54209 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.004973 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.472160 B = 5629.152541 C = 7219.150808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.513 3.487 4 O -0.536 6.536 5 C -0.109 4.109 6 C -0.076 4.076 7 C -0.021 4.021 8 Cl -0.041 7.041 9 C -0.109 4.109 10 C 0.168 3.832 11 N -0.687 5.687 12 C 0.526 3.474 13 O -0.605 6.605 14 C -0.560 4.560 15 H 0.099 0.901 16 C 0.029 3.971 17 N -0.814 5.814 18 Si 1.002 2.998 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.244 1.244 22 C -0.088 4.088 23 H 0.057 0.943 24 H 0.146 0.854 25 H 0.063 0.937 26 H 0.171 0.829 27 H 0.166 0.834 28 H 0.415 0.585 29 H 0.278 0.722 30 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 -15.003 5.464 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.359 3.641 4 O -0.427 6.427 5 C -0.111 4.111 6 C -0.096 4.096 7 C -0.049 4.049 8 Cl -0.012 7.012 9 C -0.131 4.131 10 C 0.069 3.931 11 N -0.332 5.332 12 C 0.333 3.667 13 O -0.490 6.490 14 C -0.596 4.596 15 H 0.117 0.883 16 C -0.187 4.187 17 N -0.443 5.443 18 Si 0.821 3.179 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.167 1.167 22 C -0.109 4.109 23 H 0.076 0.924 24 H 0.164 0.836 25 H 0.081 0.919 26 H 0.189 0.811 27 H 0.184 0.816 28 H 0.252 0.748 29 H 0.088 0.912 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.906 -14.777 4.966 15.615 hybrid contribution 0.106 1.078 -0.015 1.084 sum 1.012 -13.698 4.951 14.601 Atomic orbital electron populations 1.23663 0.74044 1.06316 1.02543 1.86515 1.25410 1.30493 1.83834 1.21212 0.89093 0.81737 0.72014 1.90869 1.67350 1.37559 1.46942 1.18788 0.89208 0.93952 1.09124 1.21286 0.91597 0.98401 0.98294 1.20403 0.91501 0.87948 1.05007 1.98367 1.71752 1.34158 1.96911 1.21216 1.01663 0.88693 1.01559 1.17719 0.90725 0.86989 0.97624 1.43677 1.27732 1.07907 1.53861 1.18845 0.85705 0.84156 0.77980 1.90636 1.24093 1.83020 1.51273 1.21401 1.03772 0.93875 1.40546 0.88303 1.27040 0.94890 1.05168 0.91637 1.70160 1.15808 1.32839 1.25454 0.84939 0.78333 0.74470 0.80208 1.18609 1.20048 1.16689 1.21454 0.94752 0.97374 0.97340 0.92382 0.83614 0.91867 0.81121 0.81635 0.74818 0.91244 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.74 16 2 O -0.35 -9.54 9.81 -56.16 -0.55 -10.09 16 3 C 0.51 18.88 7.90 70.34 0.56 19.43 16 4 O -0.54 -24.13 16.13 19.93 0.32 -23.81 16 5 C -0.11 -3.98 5.87 -20.12 -0.12 -4.09 16 6 C -0.08 -2.13 9.39 22.60 0.21 -1.92 16 7 C -0.02 -0.57 6.31 22.26 0.14 -0.43 16 8 Cl -0.04 -0.86 28.95 -2.72 -0.08 -0.94 16 9 C -0.11 -3.26 9.74 22.49 0.22 -3.04 16 10 C 0.17 6.67 6.29 38.25 0.24 6.91 16 11 N -0.69 -29.57 5.32 -307.64 -1.64 -31.21 16 12 C 0.53 29.35 7.57 86.30 0.65 30.00 16 13 O -0.60 -39.41 12.46 -4.47 -0.06 -39.47 16 14 C -0.56 -30.12 9.53 24.79 0.24 -29.89 16 15 H 0.10 4.62 7.85 -2.91 -0.02 4.60 16 16 C 0.03 1.57 5.50 85.33 0.47 2.03 16 17 N -0.81 -48.84 11.84 21.85 0.26 -48.58 16 18 Si 1.00 39.27 29.56 68.60 2.03 41.30 16 19 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.28 -10.62 7.11 99.48 0.71 -9.92 16 21 H -0.24 -8.74 7.11 99.48 0.71 -8.03 16 22 C -0.09 -3.90 8.23 22.70 0.19 -3.71 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.17 3.74 7.61 -2.91 -0.02 3.72 16 27 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 28 H 0.41 14.40 8.80 -92.71 -0.82 13.58 16 29 H 0.28 15.12 8.29 -92.71 -0.77 14.36 16 30 H 0.11 6.29 5.82 -2.91 -0.02 6.28 16 Total: -1.00 -76.94 293.13 4.67 -72.27 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.39 Total: 23.49 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 3.99 Total: 17.04 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -1.38 Total: -79.79 kcal Atomic # 8 Polarization: -73.09 SS G_CDS: -0.29 Total: -73.38 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -76.94 4.67 -72.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186757517.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.694 kcal (2) G-P(sol) polarization free energy of solvation -76.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds