Wall clock time and date at job start Tue Mar 31 2020 06:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 H 1.07999 * 119.99515 * 240.00498 * 5 3 2 7 7 C 1.37870 * 120.00176 * 59.99965 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47293 * 89.99746 * 9 7 5 11 11 H 1.48504 * 109.47104 * 209.99992 * 9 7 5 12 12 H 1.48495 * 109.47249 * 329.99739 * 9 7 5 13 13 O 1.45194 * 109.47240 * 65.00407 * 3 2 1 14 14 C 1.34880 * 116.99871 * 270.00124 * 13 3 2 15 15 O 1.21606 * 119.99829 * 359.97438 * 14 13 3 16 16 C 1.46559 * 119.99987 * 180.02562 * 14 13 3 17 17 C 1.34969 * 125.05959 * 179.97438 * 16 14 13 18 18 C 1.38878 * 113.64602 * 179.97438 * 17 16 14 19 19 C 1.47336 * 122.95761 * 180.02562 * 18 17 16 20 20 N 1.34779 * 120.00102 * 179.97438 * 19 18 17 21 21 O 1.21622 * 120.00075 * 359.97438 * 19 18 17 22 22 C 1.36699 * 114.08462 * 359.97438 * 18 17 16 23 23 S 1.70595 * 110.53836 * 359.76858 * 22 18 17 24 24 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 25 25 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 27 27 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 28 28 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 29 29 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 30 30 H 1.07998 * 123.17562 * 359.97438 * 17 16 14 31 31 H 0.97001 * 120.00131 * 0.02562 * 20 19 18 32 32 H 0.96999 * 120.00126 * 179.97438 * 20 19 18 33 33 H 1.08008 * 124.72872 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3813 10 1 6.5539 -0.3519 -0.7600 11 1 6.3834 0.9216 -2.8167 12 1 6.5576 2.0720 -0.6891 13 8 1.6560 2.0916 1.2407 14 6 0.4670 2.7284 1.2561 15 8 -0.2290 2.7407 0.2590 16 6 0.0146 3.4064 2.4741 17 6 -1.1521 4.0727 2.6028 18 6 -1.3419 4.6254 3.8626 19 6 -2.5443 5.3947 4.2275 20 7 -2.6670 5.9047 5.4690 21 8 -3.4261 5.5697 3.4083 22 6 -0.3154 4.3919 4.7346 23 16 0.9065 3.4658 3.9866 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8292 -0.0609 -2.9501 30 1 -1.8702 4.1670 1.8017 31 1 -1.9636 5.7656 6.1222 32 1 -3.4585 6.4115 5.7091 33 1 -0.2844 4.7413 5.7562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187956249.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:27 Heat of formation + Delta-G solvation = -101.724940 kcal Electronic energy + Delta-G solvation = -19504.719515 eV Core-core repulsion = 16236.009200 eV Total energy + Delta-G solvation = -3268.710314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.09837 -39.47819 -37.11132 -35.66816 -33.97834 -33.53915 -31.42683 -30.07712 -27.35835 -25.72368 -24.04621 -22.86133 -20.73896 -19.78052 -19.14962 -18.63780 -17.23766 -17.13297 -16.58481 -16.03794 -15.44743 -15.13552 -14.92500 -14.65236 -14.13505 -13.40262 -13.12822 -12.91911 -12.83566 -12.69124 -12.08718 -11.53997 -11.42331 -11.25238 -11.18952 -10.99792 -10.67728 -10.31820 -10.23931 -9.98073 -9.90813 -9.75245 -9.42287 -9.09191 -8.85815 -8.74280 -8.48353 -6.21234 -4.28800 0.26137 1.30695 1.58546 1.73578 3.08900 3.18633 3.22893 3.29020 3.32555 3.44721 3.59448 4.30489 4.58609 4.80143 5.03637 5.10810 5.45573 5.60710 6.02317 6.08601 6.22190 6.29090 6.44121 6.49979 6.83406 6.93221 7.04177 7.13829 7.17943 7.57483 7.69658 7.87679 8.01814 8.10822 8.52142 8.81842 9.36330 10.85558 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030571 B = 0.004061 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.684290 B = 6893.814944 C = 7393.208870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.050 0.950 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.351 6.351 14 C 0.524 3.476 15 O -0.497 6.497 16 C -0.242 4.242 17 C -0.020 4.020 18 C -0.168 4.168 19 C 0.585 3.415 20 N -0.852 5.852 21 O -0.536 6.536 22 C -0.225 4.225 23 S 0.307 5.693 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.110 0.890 28 H 0.042 0.958 29 H 0.267 0.733 30 H 0.164 0.836 31 H 0.399 0.601 32 H 0.405 0.595 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 7.150 16.976 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.268 6.268 14 C 0.366 3.634 15 O -0.388 6.388 16 C -0.361 4.361 17 C -0.051 4.051 18 C -0.186 4.186 19 C 0.369 3.631 20 N -0.416 5.416 21 O -0.413 6.413 22 C -0.365 4.365 23 S 0.576 5.424 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.128 0.872 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.182 0.818 31 H 0.228 0.772 32 H 0.236 0.764 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.116 6.438 16.285 18.243 hybrid contribution -0.524 0.672 -0.154 0.866 sum -5.639 7.110 16.131 18.508 Atomic orbital electron populations 1.21877 0.98310 0.99167 1.00833 1.22035 0.92690 0.99197 1.03487 1.20767 0.95147 0.88795 0.78214 0.93248 1.21015 0.89453 1.39213 1.06365 0.91254 1.24882 0.99283 0.94722 0.95003 1.69894 1.35417 1.37649 1.09461 0.86271 0.83794 0.78674 0.77393 1.20334 1.20954 1.19610 1.86559 1.33025 1.62555 1.44662 1.19495 0.81417 0.76811 0.85699 1.90855 1.55520 1.58374 1.34022 1.23579 1.01504 1.11813 0.99195 1.20306 0.95434 0.92517 0.96823 1.18905 0.97187 1.07546 0.94979 1.17638 0.85486 0.78059 0.81920 1.43654 1.25656 1.58535 1.13733 1.90859 1.41665 1.59179 1.49622 1.26297 1.00099 1.05262 1.04792 1.83492 1.16398 1.42596 0.99922 0.92704 0.94671 0.94972 0.87182 0.93875 0.92315 0.81845 0.77186 0.76393 0.80803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.56 37.16 0.32 -2.87 16 2 C -0.14 -3.35 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.84 2.25 -27.88 -0.06 5.78 16 4 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 5 C -0.52 -14.32 8.90 -34.44 -0.31 -14.63 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.72 11.30 55.43 0.63 -24.09 16 9 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 O -0.35 -8.18 9.64 -40.99 -0.40 -8.57 16 14 C 0.52 11.14 6.38 34.09 0.22 11.36 16 15 O -0.50 -11.78 13.98 -19.35 -0.27 -12.05 16 16 C -0.24 -4.01 6.37 -37.39 -0.24 -4.25 16 17 C -0.02 -0.31 9.47 -40.51 -0.38 -0.70 16 18 C -0.17 -2.03 5.81 -106.52 -0.62 -2.65 16 19 C 0.58 6.99 8.06 -12.56 -0.10 6.89 16 20 N -0.85 -5.72 8.84 30.41 0.27 -5.45 16 21 O -0.54 -8.75 17.52 5.26 0.09 -8.65 16 22 C -0.22 -2.02 10.41 30.18 0.31 -1.71 16 23 S 0.31 3.61 22.87 -107.50 -2.46 1.15 16 24 H 0.05 1.27 7.79 -51.93 -0.40 0.86 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 27 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.16 2.70 7.95 -52.49 -0.42 2.28 16 31 H 0.40 1.40 7.29 -40.82 -0.30 1.10 16 32 H 0.40 2.16 8.93 -40.82 -0.36 1.80 16 33 H 0.17 0.76 6.99 -52.48 -0.37 0.40 16 LS Contribution 302.53 15.07 4.56 4.56 Total: -1.00 -33.10 302.53 -6.94 -40.04 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.24 Total: 2.06 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -1.10 Total: -4.64 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.89 Total: -29.54 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.57 Total: -29.28 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.46 Total: 1.15 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.10 -6.94 -40.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187956249.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.683 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds