Wall clock time and date at job start Tue Mar 31 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34820 * 116.99687 * 270.00203 * 13 3 2 15 15 O 1.21553 * 120.00416 * 359.97438 * 14 13 3 16 16 C 1.47011 * 120.00132 * 179.97438 * 14 13 3 17 17 C 1.36684 * 125.16939 * 180.02562 * 16 14 13 18 18 C 1.36771 * 114.73489 * 179.97438 * 17 16 14 19 19 C 1.36623 * 114.75286 * 359.97438 * 18 17 16 20 20 C 1.47203 * 125.15702 * 180.02562 * 19 18 17 21 21 N 1.34773 * 120.00308 * 179.97438 * 20 19 18 22 22 O 1.21626 * 120.00117 * 359.97438 * 20 19 18 23 23 S 1.75834 * 109.68726 * 359.77047 * 19 18 17 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 30 30 H 1.08001 * 122.63442 * 359.93745 * 17 16 14 31 31 H 1.08008 * 122.61985 * 180.02562 * 18 17 16 32 32 H 0.97001 * 119.99530 * 359.97438 * 21 20 19 33 33 H 0.96997 * 120.00260 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 8 1.6559 2.0918 1.2407 14 6 0.4675 2.7283 1.2559 15 8 -0.2283 2.7406 0.2593 16 6 0.0130 3.4075 2.4780 17 6 -1.1684 4.0819 2.6109 18 6 -1.3765 4.6340 3.8448 19 6 -0.3700 4.4212 4.7438 20 6 -0.3563 4.9101 6.1322 21 7 0.6937 4.6381 6.9321 22 8 -1.2925 5.5596 6.5576 23 16 0.9031 3.4685 3.9933 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8293 -0.0604 -2.9502 30 1 -1.8814 4.1723 1.8047 31 1 -2.2673 5.1937 4.0895 32 1 1.4403 4.1199 6.5930 33 1 0.7030 4.9606 7.8469 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188072221.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:34 Heat of formation + Delta-G solvation = -100.115120 kcal Electronic energy + Delta-G solvation = -19434.710067 eV Core-core repulsion = 16166.069560 eV Total energy + Delta-G solvation = -3268.640507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.85499 -39.61720 -37.36036 -35.75899 -34.03640 -33.60558 -31.48236 -30.15668 -27.48257 -25.98203 -23.39142 -22.17942 -21.71432 -19.91445 -19.31411 -18.55261 -17.29471 -16.92344 -16.63093 -15.72541 -15.61950 -15.47327 -15.05164 -14.71367 -14.29874 -13.41220 -13.24655 -12.93162 -12.82989 -12.41604 -12.13984 -11.59790 -11.47383 -11.28685 -11.14516 -11.01332 -10.74535 -10.53170 -10.36425 -10.09071 -9.99854 -9.81792 -9.49364 -9.02057 -8.91925 -8.77177 -8.52830 -6.25568 -4.33420 -0.03976 1.19333 1.62765 1.94541 2.90324 3.13023 3.21529 3.23314 3.26506 3.29077 3.39971 4.26488 4.59512 5.03244 5.06540 5.20178 5.38966 5.75673 5.97234 6.09635 6.15984 6.22708 6.37427 6.39530 6.76161 6.86356 6.90991 7.07213 7.10291 7.51731 7.63824 7.80662 7.85591 8.05289 8.42948 8.75843 9.31843 10.81173 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025406 B = 0.004239 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.850850 B = 6603.386385 C = 7338.092832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.050 0.950 5 C -0.525 4.525 6 H 0.069 0.931 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 O -0.349 6.349 14 C 0.520 3.480 15 O -0.494 6.494 16 C -0.193 4.193 17 C -0.082 4.082 18 C -0.063 4.063 19 C -0.264 4.264 20 C 0.599 3.401 21 N -0.849 5.849 22 O -0.531 6.531 23 S 0.239 5.761 24 H 0.035 0.965 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.111 0.889 29 H 0.268 0.732 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.402 0.598 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 5.122 13.581 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.266 6.266 14 C 0.362 3.638 15 O -0.384 6.384 16 C -0.313 4.313 17 C -0.114 4.114 18 C -0.097 4.097 19 C -0.386 4.386 20 C 0.384 3.616 21 N -0.413 5.413 22 O -0.409 6.409 23 S 0.509 5.491 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.129 0.871 29 H 0.078 0.922 30 H 0.179 0.821 31 H 0.176 0.824 32 H 0.231 0.769 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.789 4.790 13.685 14.986 hybrid contribution -0.064 0.279 -0.600 0.665 sum -3.853 5.069 13.085 14.552 Atomic orbital electron populations 1.21876 0.98317 0.99237 1.00749 1.22043 0.92687 0.99156 1.03569 1.20794 0.95214 0.88800 0.78056 0.93216 1.20971 0.89388 1.39429 1.06456 0.91293 1.24875 0.99320 0.94621 0.94971 1.69874 1.35572 1.37532 1.09427 0.86323 0.83690 0.78538 0.77546 1.19894 1.20975 1.19941 1.86563 1.32870 1.62361 1.44795 1.19626 0.81551 0.76946 0.85641 1.90840 1.55507 1.58203 1.33880 1.24303 1.00628 1.08540 0.97875 1.20590 0.96085 0.96423 0.98319 1.20491 0.99192 0.98943 0.91076 1.24949 1.02814 1.11671 0.99175 1.17041 0.82233 0.78711 0.83626 1.43686 1.22105 1.58865 1.16677 1.90854 1.35431 1.39640 1.74986 1.84235 1.17749 1.45570 1.01533 0.94602 0.92697 0.95035 0.93830 0.87111 0.92209 0.82089 0.82433 0.76934 0.75907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.56 37.16 0.32 -2.75 16 2 C -0.14 -3.28 5.49 -26.73 -0.15 -3.42 16 3 C 0.22 5.72 2.25 -27.88 -0.06 5.65 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.13 8.90 -34.44 -0.31 -14.43 16 6 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.28 11.29 55.43 0.63 -23.66 16 9 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 O -0.35 -7.93 9.65 -40.82 -0.39 -8.32 16 14 C 0.52 10.60 6.39 34.29 0.22 10.81 16 15 O -0.49 -11.04 14.01 -19.31 -0.27 -11.31 16 16 C -0.19 -3.06 6.46 -36.59 -0.24 -3.29 16 17 C -0.08 -1.09 9.88 -40.67 -0.40 -1.49 16 18 C -0.06 -0.75 9.88 -40.70 -0.40 -1.15 16 19 C -0.26 -3.14 6.46 -36.53 -0.24 -3.38 16 20 C 0.60 6.93 8.08 -12.62 -0.10 6.83 16 21 N -0.85 -6.40 8.87 30.38 0.27 -6.13 16 22 O -0.53 -7.85 17.65 5.25 0.09 -7.75 16 23 S 0.24 2.97 22.17 -107.50 -2.38 0.59 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 1.22 7.79 -51.93 -0.40 0.81 16 26 H 0.03 0.64 6.06 -51.93 -0.31 0.33 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.11 2.88 5.95 -51.93 -0.31 2.57 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.16 1.97 8.04 -52.49 -0.42 1.55 16 31 H 0.16 1.63 8.04 -52.48 -0.42 1.21 16 32 H 0.40 2.33 7.93 -40.82 -0.32 2.01 16 33 H 0.41 2.29 8.93 -40.82 -0.36 1.93 16 LS Contribution 304.46 15.07 4.59 4.59 Total: -1.00 -31.21 304.46 -7.27 -38.48 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.32 Total: 3.18 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.45 Total: -5.01 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.90 Total: -29.79 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.57 Total: -27.38 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.38 Total: 0.59 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.21 -7.27 -38.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188072221.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.635 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds