Wall clock time and date at job start Tue Mar 31 2020 06:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34820 * 116.99687 * 270.00203 * 13 3 2 15 15 O 1.21553 * 120.00416 * 359.97438 * 14 13 3 16 16 C 1.47011 * 120.00132 * 179.97438 * 14 13 3 17 17 C 1.36684 * 125.16939 * 180.02562 * 16 14 13 18 18 C 1.36771 * 114.73489 * 179.97438 * 17 16 14 19 19 C 1.36623 * 114.75286 * 359.97438 * 18 17 16 20 20 C 1.47203 * 125.15702 * 180.02562 * 19 18 17 21 21 N 1.34773 * 120.00308 * 179.97438 * 20 19 18 22 22 O 1.21626 * 120.00117 * 359.97438 * 20 19 18 23 23 S 1.75834 * 109.68726 * 359.77047 * 19 18 17 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 30 30 H 1.08001 * 122.63442 * 359.93745 * 17 16 14 31 31 H 1.08008 * 122.61985 * 180.02562 * 18 17 16 32 32 H 0.97001 * 119.99530 * 359.97438 * 21 20 19 33 33 H 0.96997 * 120.00260 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 8 1.6559 2.0918 1.2407 14 6 0.4675 2.7283 1.2559 15 8 -0.2283 2.7406 0.2593 16 6 0.0130 3.4075 2.4780 17 6 -1.1684 4.0819 2.6109 18 6 -1.3765 4.6340 3.8448 19 6 -0.3700 4.4212 4.7438 20 6 -0.3563 4.9101 6.1322 21 7 0.6937 4.6381 6.9321 22 8 -1.2925 5.5596 6.5576 23 16 0.9031 3.4685 3.9933 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8293 -0.0604 -2.9502 30 1 -1.8814 4.1723 1.8047 31 1 -2.2673 5.1937 4.0895 32 1 1.4403 4.1199 6.5930 33 1 0.7030 4.9606 7.8469 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188072221.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:33 Heat of formation + Delta-G solvation = -121.251820 kcal Electronic energy + Delta-G solvation = -19435.626623 eV Core-core repulsion = 16166.069560 eV Total energy + Delta-G solvation = -3269.557063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.40321 -40.67732 -38.55483 -37.42075 -35.53492 -34.87439 -33.39607 -31.31923 -29.36141 -27.22376 -25.23626 -23.50703 -22.83143 -21.73612 -20.31291 -19.95278 -18.68299 -18.37798 -17.97873 -17.24032 -17.10825 -16.71875 -16.40563 -16.03797 -15.49051 -14.93408 -14.80672 -14.41118 -14.21449 -13.66610 -13.51447 -13.35691 -13.31103 -13.14423 -12.81584 -12.57884 -12.23867 -12.15861 -11.79663 -11.66004 -11.47973 -11.38381 -10.88717 -10.86458 -10.53895 -10.11387 -9.76114 -8.27413 -6.44451 -1.15096 0.13166 0.57087 0.83902 1.43129 1.46516 1.54145 1.74778 1.82233 2.02853 2.31877 2.40740 3.02810 3.74887 3.85014 3.99420 4.20348 4.36270 4.38277 4.52054 4.78581 4.79030 4.88984 5.06597 5.11087 5.18853 5.32722 5.49812 5.64829 5.72949 5.90501 6.06377 6.15985 6.56995 6.83223 7.07485 7.26133 8.79193 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025406 B = 0.004239 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.850850 B = 6603.386385 C = 7338.092832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.130 4.130 3 C 0.227 3.773 4 H 0.011 0.989 5 C -0.551 4.551 6 H 0.068 0.932 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.980 3.020 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.269 1.269 13 O -0.356 6.356 14 C 0.519 3.481 15 O -0.525 6.525 16 C -0.244 4.244 17 C -0.057 4.057 18 C -0.069 4.069 19 C -0.249 4.249 20 C 0.599 3.401 21 N -0.827 5.827 22 O -0.564 6.564 23 S 0.282 5.718 24 H 0.062 0.938 25 H 0.037 0.963 26 H 0.035 0.965 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.271 0.729 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.413 0.587 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 5.407 15.569 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.169 4.169 3 C 0.174 3.826 4 H 0.029 0.971 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.194 1.194 13 O -0.272 6.272 14 C 0.363 3.637 15 O -0.417 6.417 16 C -0.364 4.364 17 C -0.090 4.090 18 C -0.102 4.102 19 C -0.372 4.372 20 C 0.383 3.617 21 N -0.392 5.392 22 O -0.444 6.444 23 S 0.553 5.447 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.185 0.815 31 H 0.194 0.806 32 H 0.244 0.756 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.125 5.064 15.714 16.803 hybrid contribution -0.305 0.259 -1.108 1.178 sum -3.431 5.323 14.606 15.920 Atomic orbital electron populations 1.21734 0.96340 1.00752 1.00098 1.21891 0.94417 0.97944 1.02600 1.20486 0.94753 0.89312 0.78066 0.97148 1.21276 0.90229 1.40241 1.07086 0.91345 1.25767 1.04118 0.93803 0.94310 1.70000 1.37526 1.37760 1.09815 0.85281 0.77763 0.78773 0.77909 1.18754 1.20390 1.19417 1.86529 1.34520 1.63000 1.43170 1.20233 0.80307 0.76200 0.86929 1.90811 1.55943 1.59382 1.35553 1.24013 1.02923 1.11499 0.97937 1.20747 0.94935 0.94393 0.98974 1.20621 1.00050 0.99246 0.90301 1.25212 1.02385 1.10097 0.99462 1.17009 0.82625 0.78529 0.83544 1.43542 1.21114 1.57609 1.16900 1.90854 1.36867 1.41276 1.75417 1.84003 1.16724 1.44823 0.99136 0.91872 0.94378 0.94613 0.93329 0.89306 0.91984 0.81464 0.80573 0.75633 0.74397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 8.56 71.98 0.62 -5.05 16 2 C -0.13 -6.40 5.49 30.60 0.17 -6.23 16 3 C 0.23 12.01 2.25 29.85 0.07 12.08 16 4 H 0.01 0.64 7.16 -2.39 -0.02 0.62 16 5 C -0.55 -30.26 8.90 25.60 0.23 -30.03 16 6 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 1.08 5.29 84.66 0.45 1.53 16 8 N -0.91 -51.03 11.29 21.45 0.24 -50.78 16 9 Si 0.98 41.56 29.54 68.60 2.03 43.59 16 10 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 11 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 13 O -0.36 -16.50 9.65 -57.32 -0.55 -17.06 16 14 C 0.52 21.58 6.39 70.12 0.45 22.03 16 15 O -0.52 -24.33 14.01 19.66 0.28 -24.06 16 16 C -0.24 -7.59 6.46 24.21 0.16 -7.43 16 17 C -0.06 -1.45 9.88 21.56 0.21 -1.23 16 18 C -0.07 -1.49 9.88 21.55 0.21 -1.28 16 19 C -0.25 -5.32 6.46 24.25 0.16 -5.16 16 20 C 0.60 12.25 8.08 86.60 0.70 12.95 16 21 N -0.83 -9.93 8.87 -176.05 -1.56 -11.49 16 22 O -0.56 -15.40 17.65 -4.11 -0.07 -15.47 16 23 S 0.28 6.49 22.17 -56.49 -1.25 5.24 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.04 1.73 7.79 -2.39 -0.02 1.71 16 26 H 0.03 1.47 6.06 -2.38 -0.01 1.46 16 27 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.09 4.76 5.95 -2.39 -0.01 4.75 16 29 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.17 3.96 8.04 -2.91 -0.02 3.94 16 31 H 0.18 3.19 8.04 -2.91 -0.02 3.17 16 32 H 0.41 3.43 7.93 -92.71 -0.74 2.69 16 33 H 0.42 3.41 8.93 -92.71 -0.83 2.58 16 Total: -1.00 -68.61 304.46 2.13 -66.48 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -0.39 Total: 11.39 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 3.41 Total: -7.83 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -1.32 Total: -62.28 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: -0.35 Total: -56.58 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 6.49 SS G_CDS: -1.25 Total: 5.24 kcal Total: -68.61 2.13 -66.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188072221.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.776 kcal (2) G-P(sol) polarization free energy of solvation -68.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds