Wall clock time and date at job start Tue Mar 31 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31324 * 1 3 3 Si 1.86797 * 119.99955 * 2 1 4 4 H 1.48497 * 109.47065 * 240.00066 * 3 2 1 5 5 H 1.48505 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47237 * 119.99690 * 3 2 1 7 7 C 1.39125 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99863 * 180.02562 * 7 2 1 9 9 N 1.36711 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.34783 * 120.00107 * 180.02562 * 9 7 2 11 11 O 1.21752 * 119.99799 * 0.02562 * 10 9 7 12 12 C 1.43198 * 119.99676 * 180.02562 * 10 9 7 13 13 C 5.84560 * 83.94056 * 179.97438 * 2 1 3 14 14 C 7.17798 * 79.29742 * 179.97438 * 2 1 3 15 15 C 1.39878 * 120.17295 * 93.40949 * 14 13 12 16 16 C 1.37877 * 119.81795 * 180.27395 * 15 14 13 17 17 C 1.38411 * 120.17589 * 359.50805 * 16 15 14 18 18 C 1.50699 * 119.82230 * 180.25823 * 17 16 15 19 19 F 1.39904 * 109.47182 * 270.20734 * 18 17 16 20 20 F 1.39903 * 109.47427 * 30.20826 * 18 17 16 21 21 F 1.39900 * 109.47127 * 150.20933 * 18 17 16 22 22 C 1.38414 * 120.35293 * 0.46849 * 17 16 15 23 23 C 1.37882 * 120.17284 * 359.78796 * 22 17 16 24 24 H 0.96994 * 120.00333 * 0.02562 * 1 2 3 25 25 H 0.97007 * 120.00041 * 0.02562 * 9 7 2 26 26 H 1.08002 * 120.08740 * 359.97438 * 15 14 13 27 27 H 1.08004 * 119.90689 * 179.72135 * 16 15 14 28 28 H 1.08000 * 119.91081 * 179.76409 * 22 17 16 29 29 H 1.07998 * 120.08323 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 3.1009 1.6964 -1.2125 5 1 1.2821 2.7464 -0.0006 6 1 3.1009 1.6964 1.2125 7 6 2.0089 -1.2049 0.0005 8 1 3.0889 -1.2048 0.0010 9 7 1.3253 -2.3888 0.0016 10 6 1.9992 -3.5561 0.0026 11 8 3.2167 -3.5560 0.0031 12 6 1.2832 -4.7962 0.0032 13 6 0.6962 -5.8129 0.0026 14 6 -0.0198 -7.0531 0.0032 15 6 -0.3092 -7.6983 -1.2037 16 6 -1.0040 -8.8893 -1.1950 17 6 -1.4058 -9.4516 0.0042 18 6 -2.1596 -10.7565 0.0048 19 9 -3.5331 -10.5017 -0.0731 20 9 -1.7645 -11.5238 -1.0963 21 9 -1.8811 -11.4554 1.1843 22 6 -1.1228 -8.8195 1.2027 23 6 -0.4335 -7.6254 1.2106 24 1 -0.4850 0.8400 -0.0004 25 1 0.3552 -2.3888 0.0016 26 1 0.0064 -7.2624 -2.1400 27 1 -1.2322 -9.3864 -2.1263 28 1 -1.4430 -9.2627 2.1340 29 1 -0.2138 -7.1333 2.1465 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190826022.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:13 Heat of formation + Delta-G solvation = -116.028907 kcal Electronic energy + Delta-G solvation = -19746.825765 eV Core-core repulsion = 15800.194493 eV Total energy + Delta-G solvation = -3946.631272 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.056 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.39422 -47.91454 -47.85179 -39.57271 -38.25708 -34.30518 -34.02468 -31.64585 -31.43245 -30.97867 -26.75539 -25.40543 -23.10287 -22.96543 -21.42950 -18.80625 -18.70205 -18.58497 -18.50661 -17.85730 -16.52105 -15.47627 -15.06905 -14.96109 -14.72507 -14.60907 -14.32433 -14.23820 -14.12032 -14.01633 -13.76269 -13.66686 -13.58769 -13.39987 -12.98724 -11.84624 -11.79520 -11.67352 -11.25359 -11.18187 -10.60610 -10.43804 -10.22520 -9.70149 -9.37169 -9.05662 -8.73173 -8.27441 -6.71170 -4.06309 0.37019 1.01660 2.16805 2.41415 2.68394 3.13485 3.14074 3.17891 3.46535 3.69195 3.77706 3.89884 4.14008 4.19215 4.21031 4.55396 4.63911 4.97899 5.06740 5.09987 5.20435 5.41470 5.64513 5.80301 5.88091 6.18354 6.20632 6.47676 7.28522 7.60168 7.78216 8.30711 8.87611 9.20768 9.74796 10.44641 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.042574 B = 0.002565 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.519407 B =10913.660789 C =11105.570316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.028 3.972 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.112 0.888 9 N -0.523 5.523 10 C 0.514 3.486 11 O -0.583 6.583 12 C -0.094 4.094 13 C -0.157 4.157 14 C 0.073 3.927 15 C -0.101 4.101 16 C -0.067 4.067 17 C -0.189 4.189 18 C 0.510 3.490 19 F -0.177 7.177 20 F -0.178 7.178 21 F -0.178 7.178 22 C -0.067 4.067 23 C -0.101 4.101 24 H 0.280 0.720 25 H 0.398 0.602 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 -17.706 0.009 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.177 4.177 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.130 0.870 9 N -0.155 5.155 10 C 0.301 3.699 11 O -0.471 6.471 12 C -0.097 4.097 13 C -0.161 4.161 14 C 0.073 3.927 15 C -0.119 4.119 16 C -0.086 4.086 17 C -0.190 4.190 18 C 0.456 3.544 19 F -0.158 7.158 20 F -0.159 7.159 21 F -0.159 7.159 22 C -0.085 4.085 23 C -0.119 4.119 24 H 0.090 0.910 25 H 0.232 0.768 26 H 0.159 0.841 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.073 -17.513 0.009 18.887 hybrid contribution -0.401 0.527 -0.001 0.662 sum -7.474 -16.986 0.009 18.558 Atomic orbital electron populations 1.69574 1.06293 1.29308 1.46801 1.25484 0.95723 1.00366 0.96090 0.85756 0.78808 0.79316 0.79508 1.19421 1.20640 1.19416 1.19827 0.93916 0.81680 1.47724 0.87018 1.41779 1.09705 1.04286 1.59709 1.14435 0.86275 0.80410 0.88734 1.90735 1.12132 1.86140 1.58074 1.21758 0.94374 0.94551 0.99057 1.18888 1.00065 0.94198 1.02948 1.16228 0.93900 0.88962 0.93603 1.21342 0.98044 0.94464 0.98029 1.20824 0.95740 0.95051 0.96936 1.20048 1.06401 0.95953 0.96601 1.18301 0.77601 0.84995 0.73516 1.93233 1.32504 1.94171 1.95932 1.93190 1.90651 1.77752 1.54327 1.93189 1.93479 1.81097 1.48152 1.20828 0.96259 0.94518 0.96945 1.21341 0.97603 0.94916 0.98013 0.91038 0.76783 0.84061 0.84257 0.84251 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.69 13.05 55.51 0.72 -21.97 15 2 C 0.03 0.72 5.50 -17.44 -0.10 0.62 15 3 Si 0.94 19.70 29.55 -169.99 -5.02 14.68 15 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 7 C -0.30 -8.08 9.68 -15.05 -0.15 -8.23 15 8 H 0.11 3.08 7.15 -52.49 -0.38 2.71 15 9 N -0.52 -13.22 5.26 -13.18 -0.07 -13.29 15 10 C 0.51 12.78 7.60 -14.33 -0.11 12.67 15 11 O -0.58 -16.45 16.66 5.14 0.09 -16.37 15 12 C -0.09 -1.95 13.61 -38.84 -0.53 -2.48 15 13 C -0.16 -2.74 13.25 -38.84 -0.51 -3.25 15 14 C 0.07 0.99 5.75 -106.75 -0.61 0.38 15 15 C -0.10 -1.15 9.77 -39.10 -0.38 -1.53 15 16 C -0.07 -0.66 9.38 -39.65 -0.37 -1.03 15 17 C -0.19 -1.90 5.46 -104.49 -0.57 -2.47 15 18 C 0.51 4.96 3.36 36.01 0.12 5.08 15 19 F -0.18 -1.82 17.30 2.25 0.04 -1.78 15 20 F -0.18 -1.75 16.45 2.25 0.04 -1.71 15 21 F -0.18 -1.75 16.45 2.25 0.04 -1.71 15 22 C -0.07 -0.66 9.38 -39.65 -0.37 -1.03 15 23 C -0.10 -1.15 9.77 -39.10 -0.38 -1.53 15 24 H 0.28 6.74 8.31 -40.82 -0.34 6.40 15 25 H 0.40 9.61 7.86 -40.82 -0.32 9.29 15 26 H 0.14 1.44 8.06 -52.49 -0.42 1.02 15 27 H 0.14 1.07 7.60 -52.48 -0.40 0.67 15 28 H 0.14 1.07 7.59 -52.49 -0.40 0.67 15 29 H 0.14 1.44 8.06 -52.49 -0.42 1.02 15 LS Contribution 293.17 15.07 4.42 4.42 Total: -1.00 -29.28 293.17 -5.19 -34.47 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -1.47 Total: 6.05 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -3.96 Total: -2.80 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.65 Total: -35.25 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.09 Total: -16.37 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.11 Total: -5.20 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.28 -5.19 -34.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190826022.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.560 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds