Wall clock time and date at job start Tue Mar 31 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31324 * 1 3 3 Si 1.86797 * 119.99955 * 2 1 4 4 H 1.48497 * 109.47065 * 240.00066 * 3 2 1 5 5 H 1.48505 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47237 * 119.99690 * 3 2 1 7 7 C 1.39125 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99863 * 180.02562 * 7 2 1 9 9 N 1.36711 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.34783 * 120.00107 * 180.02562 * 9 7 2 11 11 O 1.21752 * 119.99799 * 0.02562 * 10 9 7 12 12 C 1.43198 * 119.99676 * 180.02562 * 10 9 7 13 13 C 5.84560 * 83.94056 * 179.97438 * 2 1 3 14 14 C 7.17798 * 79.29742 * 179.97438 * 2 1 3 15 15 C 1.39878 * 120.17295 * 93.40949 * 14 13 12 16 16 C 1.37877 * 119.81795 * 180.27395 * 15 14 13 17 17 C 1.38411 * 120.17589 * 359.50805 * 16 15 14 18 18 C 1.50699 * 119.82230 * 180.25823 * 17 16 15 19 19 F 1.39904 * 109.47182 * 270.20734 * 18 17 16 20 20 F 1.39903 * 109.47427 * 30.20826 * 18 17 16 21 21 F 1.39900 * 109.47127 * 150.20933 * 18 17 16 22 22 C 1.38414 * 120.35293 * 0.46849 * 17 16 15 23 23 C 1.37882 * 120.17284 * 359.78796 * 22 17 16 24 24 H 0.96994 * 120.00333 * 0.02562 * 1 2 3 25 25 H 0.97007 * 120.00041 * 0.02562 * 9 7 2 26 26 H 1.08002 * 120.08740 * 359.97438 * 15 14 13 27 27 H 1.08004 * 119.90689 * 179.72135 * 16 15 14 28 28 H 1.08000 * 119.91081 * 179.76409 * 22 17 16 29 29 H 1.07998 * 120.08323 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 3.1009 1.6964 -1.2125 5 1 1.2821 2.7464 -0.0006 6 1 3.1009 1.6964 1.2125 7 6 2.0089 -1.2049 0.0005 8 1 3.0889 -1.2048 0.0010 9 7 1.3253 -2.3888 0.0016 10 6 1.9992 -3.5561 0.0026 11 8 3.2167 -3.5560 0.0031 12 6 1.2832 -4.7962 0.0032 13 6 0.6962 -5.8129 0.0026 14 6 -0.0198 -7.0531 0.0032 15 6 -0.3092 -7.6983 -1.2037 16 6 -1.0040 -8.8893 -1.1950 17 6 -1.4058 -9.4516 0.0042 18 6 -2.1596 -10.7565 0.0048 19 9 -3.5331 -10.5017 -0.0731 20 9 -1.7645 -11.5238 -1.0963 21 9 -1.8811 -11.4554 1.1843 22 6 -1.1228 -8.8195 1.2027 23 6 -0.4335 -7.6254 1.2106 24 1 -0.4850 0.8400 -0.0004 25 1 0.3552 -2.3888 0.0016 26 1 0.0064 -7.2624 -2.1400 27 1 -1.2322 -9.3864 -2.1263 28 1 -1.4430 -9.2627 2.1340 29 1 -0.2138 -7.1333 2.1465 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190826022.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:13 Heat of formation + Delta-G solvation = -132.708214 kcal Electronic energy + Delta-G solvation = -19747.549034 eV Core-core repulsion = 15800.194493 eV Total energy + Delta-G solvation = -3947.354541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.056 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.17278 -48.68566 -48.63731 -40.50336 -40.20126 -36.23950 -35.37290 -33.53149 -32.28659 -32.27437 -28.06569 -26.97100 -24.26130 -23.95655 -22.81930 -20.46875 -19.65326 -19.48444 -19.36443 -19.33248 -18.06488 -16.95152 -16.40743 -16.02618 -15.86515 -15.68974 -15.52176 -15.38009 -15.13361 -15.09383 -14.89978 -14.79015 -14.48361 -14.40764 -14.26536 -13.66462 -13.03117 -12.66271 -12.62846 -12.58560 -12.44606 -12.10415 -11.77972 -11.53143 -11.00793 -10.25862 -10.20132 -9.92781 -8.64830 -6.11807 -0.63669 0.17959 0.53174 1.40838 1.47291 1.48547 1.56102 1.61330 2.19504 2.42689 2.52547 2.60107 2.70173 2.99235 3.16880 3.40336 3.55139 3.77216 3.81485 4.10041 4.30150 4.30375 4.56668 4.84983 4.99342 5.03027 5.25565 5.27196 5.56275 5.77625 6.10926 6.33914 6.88480 7.23962 7.79503 8.51371 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.042574 B = 0.002565 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.519407 B =10913.660789 C =11105.570316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.004 4.004 3 Si 1.007 2.993 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.343 4.343 8 H 0.093 0.907 9 N -0.527 5.527 10 C 0.519 3.481 11 O -0.627 6.627 12 C -0.172 4.172 13 C -0.081 4.081 14 C 0.029 3.971 15 C -0.094 4.094 16 C -0.064 4.064 17 C -0.181 4.181 18 C 0.516 3.484 19 F -0.179 7.179 20 F -0.177 7.177 21 F -0.177 7.177 22 C -0.064 4.064 23 C -0.094 4.094 24 H 0.287 0.713 25 H 0.401 0.599 26 H 0.151 0.849 27 H 0.165 0.835 28 H 0.165 0.835 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 -19.184 0.010 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.207 4.207 3 Si 0.828 3.172 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.472 4.472 8 H 0.111 0.889 9 N -0.159 5.159 10 C 0.308 3.692 11 O -0.518 6.518 12 C -0.175 4.175 13 C -0.084 4.084 14 C 0.029 3.971 15 C -0.112 4.112 16 C -0.081 4.081 17 C -0.182 4.182 18 C 0.461 3.539 19 F -0.160 7.160 20 F -0.158 7.158 21 F -0.158 7.158 22 C -0.081 4.081 23 C -0.111 4.111 24 H 0.097 0.903 25 H 0.235 0.765 26 H 0.169 0.831 27 H 0.183 0.817 28 H 0.183 0.817 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.507 -19.007 0.010 20.824 hybrid contribution -0.128 0.682 -0.001 0.694 sum -8.635 -18.325 0.010 20.258 Atomic orbital electron populations 1.69630 1.07319 1.30591 1.46472 1.26348 0.96612 1.03046 0.94651 0.84788 0.77755 0.75166 0.79459 1.19142 1.19015 1.19134 1.19871 0.93499 0.83078 1.50761 0.88918 1.41781 1.09700 1.04367 1.60071 1.14772 0.85956 0.81480 0.87006 1.90668 1.14182 1.87254 1.59685 1.20918 0.98395 0.95255 1.02962 1.19460 0.97239 0.93509 0.98211 1.16425 0.96571 0.88418 0.95690 1.21455 0.97470 0.94684 0.97542 1.21065 0.94746 0.94285 0.98046 1.20268 1.05246 0.95835 0.96870 1.18176 0.77378 0.84736 0.73566 1.93237 1.32662 1.94175 1.95945 1.93199 1.90619 1.77705 1.54282 1.93198 1.93450 1.81054 1.48101 1.21068 0.95340 0.93680 0.98054 1.21454 0.96919 0.95242 0.97526 0.90302 0.76476 0.83131 0.81731 0.81731 0.83121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.80 13.05 21.69 0.28 -46.52 15 2 C 0.00 -0.18 5.50 84.98 0.47 0.28 15 3 Si 1.01 40.47 29.55 68.60 2.03 42.49 15 4 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 5 H -0.27 -9.95 7.11 99.48 0.71 -9.25 15 6 H -0.27 -10.55 7.11 99.48 0.71 -9.84 15 7 C -0.34 -19.16 9.68 84.15 0.81 -18.35 15 8 H 0.09 5.42 7.15 -2.91 -0.02 5.40 15 9 N -0.53 -28.04 5.26 -313.80 -1.65 -29.70 15 10 C 0.52 27.26 7.60 85.49 0.65 27.91 15 11 O -0.63 -37.44 16.66 -4.51 -0.08 -37.52 15 12 C -0.17 -7.40 13.61 30.01 0.41 -6.99 15 13 C -0.08 -2.78 13.25 30.02 0.40 -2.39 15 14 C 0.03 0.74 5.75 -21.24 -0.12 0.61 15 15 C -0.09 -1.90 9.77 22.58 0.22 -1.68 15 16 C -0.06 -1.03 9.38 22.23 0.21 -0.82 15 17 C -0.18 -3.00 5.46 -19.78 -0.11 -3.10 15 18 C 0.52 8.28 3.36 71.24 0.24 8.52 15 19 F -0.18 -3.12 17.30 44.97 0.78 -2.34 15 20 F -0.18 -2.90 16.45 44.97 0.74 -2.16 15 21 F -0.18 -2.90 16.45 44.97 0.74 -2.16 15 22 C -0.06 -1.03 9.38 22.23 0.21 -0.82 15 23 C -0.09 -1.89 9.77 22.58 0.22 -1.67 15 24 H 0.29 13.73 8.31 -92.71 -0.77 12.96 15 25 H 0.40 20.29 7.86 -92.70 -0.73 19.56 15 26 H 0.15 2.74 8.06 -2.91 -0.02 2.72 15 27 H 0.17 1.85 7.60 -2.91 -0.02 1.83 15 28 H 0.17 1.85 7.59 -2.91 -0.02 1.83 15 29 H 0.15 2.74 8.06 -2.91 -0.02 2.71 15 Total: -1.00 -65.29 293.17 6.96 -58.33 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.51 Total: 18.06 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 3.61 Total: 1.50 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -1.37 Total: -76.21 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.08 Total: -37.52 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 2.26 Total: -6.65 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.49 kcal Total: -65.29 6.96 -58.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190826022.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.379 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds