Wall clock time and date at job start Tue Mar 31 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00385 * 2 1 4 4 H 1.48500 * 109.46993 * 240.00327 * 3 2 1 5 5 H 1.48497 * 109.46868 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46907 * 120.00317 * 3 2 1 7 7 C 1.38798 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00167 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00019 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46740 * 180.02562 * 10 9 7 12 12 O 1.20820 * 120.00420 * 359.97438 * 11 10 9 13 13 O 1.34272 * 119.99522 * 180.02562 * 11 10 9 14 14 C 1.35922 * 116.99850 * 185.77081 * 13 11 10 15 15 C 1.38752 * 120.05938 * 248.72208 * 14 13 11 16 16 C 1.38121 * 119.94558 * 179.76975 * 15 14 13 17 17 C 1.38292 * 120.05514 * 0.50943 * 16 15 14 18 18 C 1.38245 * 120.10749 * 359.73907 * 17 16 15 19 19 N 1.48022 * 119.96855 * 179.97438 * 18 17 16 20 20 O 1.21798 * 120.00174 * 180.02562 * 19 18 17 21 21 O 1.21801 * 120.00074 * 0.02562 * 19 18 17 22 22 C 1.38166 * 120.06068 * 0.02562 * 18 17 16 23 23 H 0.97002 * 119.99702 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46894 * 60.00159 * 10 9 7 25 25 H 1.08998 * 109.47044 * 300.00013 * 10 9 7 26 26 H 1.08000 * 120.02258 * 0.02562 * 15 14 13 27 27 H 1.07995 * 119.97122 * 180.24522 * 16 15 14 28 28 H 1.07993 * 119.94184 * 179.77165 * 17 16 15 29 29 H 1.07998 * 120.02557 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6962 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9870 -5.3028 -0.0012 12 8 0.7953 -5.5015 -0.0011 13 8 2.8405 -6.3393 -0.0008 14 6 2.3026 -7.5816 -0.1231 15 6 2.3387 -8.4631 0.9477 16 6 1.7872 -9.7232 0.8223 17 6 1.2088 -10.1103 -0.3727 18 6 1.1761 -9.2356 -1.4428 19 7 0.5567 -9.6533 -2.7206 20 8 0.5281 -8.8833 -3.6639 21 8 0.0757 -10.7670 -2.8288 22 6 1.7221 -7.9723 -1.3208 23 1 -0.4850 0.8401 0.0004 24 1 3.1242 -3.7314 0.8895 25 1 3.1242 -3.7315 -0.8905 26 1 2.7940 -8.1627 1.8798 27 1 1.8116 -10.4083 1.6568 28 1 0.7814 -11.0973 -0.4699 29 1 1.6960 -7.2892 -2.1570 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192484612.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:31 Heat of formation + Delta-G solvation = -49.157209 kcal Electronic energy + Delta-G solvation = -18607.633102 eV Core-core repulsion = 15205.369201 eV Total energy + Delta-G solvation = -3402.263901 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.039 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.39204 -41.45845 -39.11111 -36.89619 -36.70612 -32.58422 -32.36237 -31.38154 -29.65105 -26.87796 -25.68445 -24.08732 -22.87443 -21.47552 -19.57373 -18.85889 -18.15949 -17.69343 -17.52453 -17.00601 -16.84646 -16.40322 -15.11926 -14.93303 -14.71215 -14.35644 -13.77945 -13.28274 -13.01400 -12.81517 -12.60073 -12.39747 -11.76613 -11.59532 -11.28240 -11.23595 -11.20179 -11.13014 -10.92976 -10.52463 -10.04533 -9.99805 -9.47179 -9.20093 -8.52397 -6.74474 -6.36812 -4.11869 -0.44203 0.38051 1.06142 1.14042 2.18291 2.26853 2.91668 3.15837 3.16219 3.21463 3.31552 4.02118 4.04112 4.17520 4.25468 4.40762 4.57354 4.84329 4.99360 5.13342 5.25387 5.35878 5.47793 5.51386 5.55964 5.79680 5.85985 6.14641 6.35403 7.45584 7.45986 7.77141 8.20138 9.08534 10.70565 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.032007 B = 0.003395 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.595385 B = 8245.269883 C = 8749.505960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.075 3.925 3 Si 0.924 3.076 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.077 0.923 9 S -0.053 6.053 10 C -0.127 4.127 11 C 0.477 3.523 12 O -0.463 6.463 13 O -0.292 6.292 14 C 0.101 3.899 15 C -0.069 4.069 16 C -0.101 4.101 17 C -0.060 4.060 18 C -0.028 4.028 19 N 0.029 4.971 20 O -0.152 6.152 21 O -0.158 6.158 22 C -0.065 4.065 23 H 0.272 0.728 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 -18.279 2.313 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.749 3.251 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.687 4.687 8 H 0.096 0.904 9 S 0.173 5.827 10 C -0.275 4.275 11 C 0.318 3.682 12 O -0.344 6.344 13 O -0.209 6.209 14 C 0.058 3.942 15 C -0.087 4.087 16 C -0.120 4.120 17 C -0.079 4.079 18 C -0.111 4.111 19 N 0.549 4.451 20 O -0.369 6.369 21 O -0.374 6.374 22 C -0.085 4.085 23 H 0.081 0.919 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.171 0.829 27 H 0.175 0.825 28 H 0.176 0.824 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.247 -18.219 2.949 19.188 hybrid contribution 1.682 1.169 -0.387 2.085 sum 6.929 -17.050 2.562 18.582 Atomic orbital electron populations 1.69990 1.06022 1.27966 1.46093 1.25018 0.95097 0.99203 0.94138 0.86144 0.79201 0.80767 0.78960 1.19749 1.20700 1.19791 1.22775 0.95006 0.90899 1.60063 0.90450 1.85517 1.03597 0.96647 1.96958 1.23380 1.07637 0.89380 1.07091 1.23992 0.85258 0.86575 0.72337 1.90739 1.16450 1.84735 1.42514 1.84770 1.39955 1.12226 1.83951 1.18257 0.98059 0.85497 0.92357 1.21654 0.95658 0.93402 0.97998 1.21080 0.97504 0.96171 0.97243 1.21137 0.96070 0.99986 0.90739 1.20832 1.07218 0.97002 0.86023 1.43541 0.98762 1.00363 1.02434 1.94592 1.62031 1.50096 1.30214 1.94521 1.46774 1.06828 1.89240 1.21216 0.93506 0.94590 0.99175 0.91858 0.87278 0.87232 0.82868 0.82535 0.82434 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.08 13.22 55.49 0.73 -24.35 15 2 C 0.08 2.06 5.49 -17.43 -0.10 1.96 15 3 Si 0.92 20.52 29.55 -169.99 -5.02 15.50 15 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 7 C -0.54 -14.52 9.50 30.94 0.29 -14.22 15 8 H 0.08 1.95 7.80 -52.49 -0.41 1.54 15 9 S -0.05 -1.35 20.58 -107.50 -2.21 -3.57 15 10 C -0.13 -2.36 6.27 36.01 0.23 -2.13 15 11 C 0.48 8.28 7.75 36.01 0.28 8.56 15 12 O -0.46 -9.45 15.27 -18.74 -0.29 -9.74 15 13 O -0.29 -4.12 10.04 -23.63 -0.24 -4.36 15 14 C 0.10 1.26 5.27 -39.22 -0.21 1.06 15 15 C -0.07 -0.61 9.99 -39.43 -0.39 -1.01 15 16 C -0.10 -0.70 10.04 -39.60 -0.40 -1.10 15 17 C -0.06 -0.53 9.55 -39.56 -0.38 -0.91 15 18 C -0.03 -0.34 6.85 -79.97 -0.55 -0.89 15 19 N 0.03 0.40 4.45 33.95 0.15 0.55 15 20 O -0.15 -2.37 18.45 -29.46 -0.54 -2.91 15 21 O -0.16 -2.17 18.45 -29.46 -0.54 -2.71 15 22 C -0.07 -0.85 8.84 -39.43 -0.35 -1.20 15 23 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 24 H 0.11 1.82 8.14 -51.91 -0.42 1.40 15 25 H 0.11 1.85 8.14 -51.92 -0.42 1.43 15 26 H 0.15 1.01 8.06 -52.49 -0.42 0.58 15 27 H 0.16 0.50 8.06 -52.49 -0.42 0.08 15 28 H 0.16 1.04 7.60 -52.49 -0.40 0.65 15 29 H 0.16 2.17 7.61 -52.49 -0.40 1.77 15 LS Contribution 294.61 15.07 4.44 4.44 Total: -1.00 -32.25 294.61 -7.12 -39.38 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -2.03 Total: -2.36 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.57 Total: -9.88 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.88 Total: -23.79 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -1.61 Total: -19.71 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.21 Total: -3.57 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.25 -7.12 -39.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192484612.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.781 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds