Wall clock time and date at job start Tue Mar 31 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 120.00063 * 2 1 4 4 H 1.48509 * 109.47300 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46834 * 299.99887 * 3 2 1 6 6 H 1.48493 * 109.47205 * 59.99723 * 3 2 1 7 7 C 1.38802 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00607 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99453 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99820 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.47255 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99290 * 7.44336 * 11 10 9 13 13 N 1.34773 * 120.00189 * 187.44133 * 11 10 9 14 14 C 1.46502 * 119.99918 * 8.63060 * 13 11 10 15 15 C 1.52992 * 109.47259 * 269.99950 * 14 13 11 16 16 F 1.39899 * 109.47572 * 59.99941 * 15 14 13 17 17 F 1.39903 * 109.47284 * 180.02562 * 15 14 13 18 18 F 1.39908 * 109.47265 * 300.00084 * 15 14 13 19 19 C 1.46497 * 119.99960 * 188.63199 * 13 11 10 20 20 C 1.52995 * 117.49998 * 15.69625 * 19 13 11 21 21 C 1.53002 * 117.49929 * 307.03804 * 19 13 11 22 22 H 0.96998 * 119.99923 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47744 * 59.99443 * 10 9 7 24 24 H 1.09006 * 109.46817 * 299.99243 * 10 9 7 25 25 H 1.09001 * 109.46948 * 30.00440 * 14 13 11 26 26 H 1.08999 * 109.46677 * 149.99820 * 14 13 11 27 27 H 1.09004 * 115.54973 * 161.36995 * 19 13 11 28 28 H 1.09007 * 117.49982 * 0.02562 * 20 19 13 29 29 H 1.09005 * 117.49963 * 145.01860 * 20 19 13 30 30 H 1.08996 * 117.50315 * 214.98316 * 21 19 13 31 31 H 1.09003 * 117.49680 * 359.97438 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9874 -5.3028 0.0030 12 8 0.7994 -5.5054 -0.1335 13 7 2.8348 -6.3396 0.1554 14 6 4.2356 -6.0950 0.5080 15 6 5.0631 -5.9378 -0.7691 16 9 4.5739 -4.8579 -1.5119 17 9 6.4008 -5.7048 -0.4324 18 9 4.9715 -7.1075 -1.5311 19 6 2.3553 -7.7111 -0.0317 20 6 1.0151 -7.8999 -0.7451 21 6 1.1207 -8.1424 0.7626 22 1 -0.4850 0.8400 -0.0004 23 1 3.1239 -3.7309 0.8924 24 1 3.1251 -3.7317 -0.8876 25 1 4.3069 -5.1836 1.1018 26 1 4.6167 -6.9363 1.0867 27 1 3.1282 -8.4597 -0.2062 28 1 0.4903 -7.0035 -1.0757 29 1 0.9061 -8.7727 -1.3888 30 1 1.0812 -9.1747 1.1102 31 1 0.6656 -7.4057 1.4246 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194287759.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:26 Heat of formation + Delta-G solvation = -146.090277 kcal Electronic energy + Delta-G solvation = -20759.494568 eV Core-core repulsion = 16947.003688 eV Total energy + Delta-G solvation = -3812.490880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.18623 -47.71058 -47.67180 -40.22547 -36.37083 -34.91479 -32.45787 -29.54054 -28.69283 -25.53029 -23.74553 -22.84654 -22.29137 -19.43822 -18.67634 -18.61985 -18.10413 -17.41142 -16.58421 -16.32340 -15.03542 -14.82695 -14.56607 -14.55078 -14.40483 -14.12956 -14.07651 -13.94240 -13.78549 -13.20786 -13.13165 -12.87344 -12.68252 -12.55654 -11.97484 -11.34515 -11.09937 -11.05765 -10.97938 -10.77377 -10.38208 -9.83377 -9.27853 -9.09548 -8.61996 -8.28637 -6.54285 -6.24866 -3.95834 2.37424 2.53735 2.84305 3.19970 3.20679 3.29215 3.45224 3.64447 3.81505 3.95819 4.07996 4.18115 4.56371 4.72539 4.86065 4.90290 5.08171 5.09848 5.11604 5.44253 5.57619 5.76300 5.79504 6.04066 6.13514 6.35490 6.65964 7.15223 7.57844 8.28403 8.33049 9.21030 10.82688 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.019570 B = 0.005703 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.441528 B = 4908.623437 C = 6064.330588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.074 0.926 9 S -0.058 6.058 10 C -0.169 4.169 11 C 0.539 3.461 12 O -0.490 6.490 13 N -0.593 5.593 14 C 0.077 3.923 15 C 0.429 3.571 16 F -0.171 7.171 17 F -0.183 7.183 18 F -0.183 7.183 19 C 0.064 3.936 20 C -0.187 4.187 21 C -0.183 4.183 22 H 0.268 0.732 23 H 0.087 0.913 24 H 0.111 0.889 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.137 0.863 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.273 -15.593 1.290 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.682 4.682 8 H 0.092 0.908 9 S 0.168 5.832 10 C -0.319 4.319 11 C 0.328 3.672 12 O -0.363 6.363 13 N -0.326 5.326 14 C -0.050 4.050 15 C 0.373 3.627 16 F -0.153 7.153 17 F -0.164 7.164 18 F -0.164 7.164 19 C -0.040 4.040 20 C -0.224 4.224 21 C -0.221 4.221 22 H 0.078 0.922 23 H 0.105 0.895 24 H 0.129 0.871 25 H 0.147 0.853 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.325 -15.765 1.183 17.867 hybrid contribution 2.294 1.260 -0.223 2.627 sum 10.619 -14.505 0.960 18.002 Atomic orbital electron populations 1.70020 1.05961 1.27417 1.46909 1.24991 0.95030 0.99059 0.94461 0.86112 0.79638 0.81811 0.77928 1.19551 1.20527 1.20544 1.22886 0.94954 0.91425 1.58934 0.90783 1.85336 1.04592 0.96492 1.96739 1.23949 1.07293 0.94938 1.05768 1.20529 0.85999 0.86007 0.74655 1.90577 1.15213 1.84471 1.46006 1.47256 1.07810 1.05982 1.71567 1.22716 0.82114 1.08111 0.92092 1.21497 0.78983 0.74161 0.88045 1.93187 1.87093 1.55617 1.79384 1.93193 1.36480 1.94460 1.92288 1.93178 1.96005 1.48708 1.78522 1.21751 0.91853 0.83255 1.07153 1.23810 0.98507 1.05093 0.95003 1.23286 1.01307 1.01896 0.95627 0.92195 0.89525 0.87140 0.85260 0.85619 0.85333 0.84489 0.89153 0.88724 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -15.02 9.50 30.94 0.29 -14.72 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.54 20.59 -107.50 -2.21 -3.76 16 10 C -0.17 -3.35 4.73 36.01 0.17 -3.18 16 11 C 0.54 9.68 7.24 -10.98 -0.08 9.60 16 12 O -0.49 -10.21 11.65 5.56 0.06 -10.15 16 13 N -0.59 -7.90 2.75 -166.11 -0.46 -8.36 16 14 C 0.08 0.75 5.36 -4.04 -0.02 0.73 16 15 C 0.43 4.91 3.29 37.15 0.12 5.03 16 16 F -0.17 -2.51 13.90 2.25 0.03 -2.48 16 17 F -0.18 -2.00 17.32 2.25 0.04 -1.96 16 18 F -0.18 -2.14 16.76 2.25 0.04 -2.10 16 19 C 0.06 0.75 6.22 -67.93 -0.42 0.32 16 20 C -0.19 -2.46 9.62 -26.70 -0.26 -2.72 16 21 C -0.18 -2.18 9.88 -26.70 -0.26 -2.45 16 22 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 23 H 0.09 1.53 6.77 -51.92 -0.35 1.17 16 24 H 0.11 2.16 5.46 -51.91 -0.28 1.88 16 25 H 0.13 1.18 6.34 -51.93 -0.33 0.85 16 26 H 0.13 0.77 8.07 -51.93 -0.42 0.35 16 27 H 0.13 1.16 8.03 -51.93 -0.42 0.74 16 28 H 0.14 2.32 5.27 -51.98 -0.27 2.05 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.46 7.57 -51.93 -0.39 1.07 16 LS Contribution 288.33 15.07 4.35 4.35 Total: -1.00 -32.76 288.33 -5.85 -38.62 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -2.86 Total: 0.17 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.55 Total: -5.40 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.28 Total: -33.53 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.06 Total: -10.15 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.11 Total: -6.54 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.76 -5.85 -38.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194287759.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.472 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds