Wall clock time and date at job start Tue Mar 31 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46985 * 2 1 4 4 C 1.50698 * 109.47283 * 120.00198 * 2 1 3 5 5 C 1.38254 * 119.99772 * 72.93548 * 4 2 1 6 6 C 1.38221 * 120.02275 * 179.72338 * 5 4 2 7 7 C 1.38244 * 120.00452 * 0.55230 * 6 5 4 8 8 C 1.38296 * 119.99481 * 359.71997 * 7 6 5 9 9 Br 1.89093 * 120.01577 * 180.02562 * 8 7 6 10 10 C 1.38199 * 119.99232 * 253.20555 * 4 2 1 11 11 N 1.46500 * 109.46924 * 239.99882 * 2 1 3 12 12 C 1.46501 * 119.99915 * 174.56430 * 11 2 1 13 13 C 1.36936 * 120.00033 * 354.57073 * 11 2 1 14 14 H 1.08002 * 120.00362 * 17.23263 * 13 11 2 15 15 C 1.38819 * 119.99948 * 197.22835 * 13 11 2 16 16 N 1.31619 * 119.99920 * 17.07482 * 15 13 11 17 17 Si 1.86805 * 119.99872 * 197.06685 * 15 13 11 18 18 H 1.48496 * 109.46873 * 60.00483 * 17 15 13 19 19 H 1.48495 * 109.46548 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47303 * 300.00484 * 17 15 13 21 21 H 1.09003 * 109.46774 * 299.99678 * 1 2 3 22 22 H 1.08994 * 109.47495 * 59.99753 * 1 2 3 23 23 H 1.09008 * 109.46706 * 180.02562 * 1 2 3 24 24 H 1.08006 * 119.98965 * 0.02562 * 5 4 2 25 25 H 1.08000 * 119.99832 * 180.26579 * 6 5 4 26 26 H 1.08004 * 120.00200 * 179.70219 * 7 6 5 27 27 H 1.08005 * 120.00366 * 0.02596 * 10 4 2 28 28 H 1.08996 * 109.46960 * 354.55219 * 12 11 2 29 29 H 1.09002 * 109.46743 * 114.55099 * 12 11 2 30 30 H 1.08995 * 109.47269 * 234.54625 * 12 11 2 31 31 H 0.96992 * 119.99906 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.9316 -2.0861 1.3239 6 6 2.3974 -2.7388 2.4497 7 6 2.9540 -2.0150 3.4877 8 6 3.0499 -0.6384 3.3972 9 35 3.8118 0.3521 4.8164 10 6 2.5888 0.0139 2.2676 11 7 2.0183 -0.6906 -1.1962 12 6 3.4533 -0.7214 -1.4898 13 6 1.1335 -1.3073 -2.0399 14 1 0.0827 -1.0621 -1.9937 15 6 1.5870 -2.2478 -2.9547 16 7 2.7740 -2.7955 -2.8017 17 14 0.5127 -2.7360 -4.4027 18 1 0.2256 -1.5382 -5.2321 19 1 1.2209 -3.7498 -5.2248 20 1 -0.7627 -3.3086 -3.9020 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 1.4931 -2.6515 0.5148 25 1 2.3223 -3.8139 2.5204 26 1 3.3135 -2.5247 4.3695 27 1 2.6631 1.0890 2.1965 28 1 3.9852 -0.1020 -0.7677 29 1 3.8155 -1.7474 -1.4249 30 1 3.6268 -0.3378 -2.4951 31 1 3.0908 -3.4529 -3.4406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194971951.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:03 Heat of formation + Delta-G solvation = 50.545028 kcal Electronic energy + Delta-G solvation = -14930.446516 eV Core-core repulsion = 12451.867731 eV Total energy + Delta-G solvation = -2478.578785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.07264 -36.08436 -32.62479 -31.72509 -30.20642 -29.08128 -28.45399 -25.73199 -23.69002 -22.02565 -21.96483 -19.44235 -16.53604 -16.17163 -15.31919 -15.04298 -14.40660 -13.73114 -13.43252 -13.22499 -12.92777 -12.82544 -11.99245 -11.72348 -11.33312 -11.20900 -10.86387 -10.81076 -10.60075 -10.49483 -10.39029 -10.25933 -10.05615 -9.85113 -9.68816 -8.64504 -8.46020 -8.18184 -6.85695 -5.65004 -3.17370 1.59443 1.73121 1.87599 3.37226 3.44032 3.44713 4.09888 4.49710 5.13119 5.23414 5.39664 5.43000 5.63116 5.81513 5.87777 5.97673 6.12750 6.24267 6.31246 6.41953 6.55975 6.68405 6.76042 6.85847 6.95021 7.23000 7.33641 7.36673 7.78529 7.88935 8.38381 9.21142 9.85988 10.32047 11.29390 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.041936 B = 0.004616 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.526825 B = 6064.800376 C = 6176.346811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.206 3.794 3 H 0.043 0.957 4 C -0.077 4.077 5 C -0.063 4.063 6 C -0.122 4.122 7 C -0.108 4.108 8 C -0.095 4.095 9 Br -0.077 7.077 10 C -0.097 4.097 11 N -0.591 5.591 12 C 0.145 3.855 13 C -0.255 4.255 14 H 0.078 0.922 15 C -0.001 4.001 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.284 1.284 21 H 0.042 0.958 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.140 0.860 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.001 0.999 29 H 0.073 0.927 30 H 0.014 0.986 31 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 4.435 14.008 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.098 3.902 3 H 0.060 0.940 4 C -0.081 4.081 5 C -0.082 4.082 6 C -0.141 4.141 7 C -0.128 4.128 8 C -0.174 4.174 9 Br 0.008 6.992 10 C -0.118 4.118 11 N -0.313 5.313 12 C 0.000 4.000 13 C -0.384 4.384 14 H 0.096 0.904 15 C -0.199 4.199 16 N -0.549 5.549 17 Si 0.733 3.267 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.210 1.210 21 H 0.061 0.939 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.157 0.843 25 H 0.141 0.859 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.020 0.980 29 H 0.090 0.910 30 H 0.033 0.967 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.979 4.688 14.392 15.167 hybrid contribution -0.467 -0.615 -1.098 1.342 sum 0.512 4.072 13.294 13.913 Atomic orbital electron populations 1.21858 0.94835 1.02357 1.00223 1.19446 0.93477 0.93564 0.83699 0.93976 1.21254 0.96496 0.94778 0.95617 1.21358 0.95722 0.94485 0.96602 1.21168 0.99411 0.99736 0.93822 1.20914 1.00577 0.91881 0.99432 1.21602 1.06623 0.94494 0.94642 1.96594 1.83044 1.73626 1.45910 1.20993 0.98858 0.99778 0.92153 1.44132 1.03687 1.62142 1.21387 1.21127 0.82471 1.01057 0.95306 1.19296 0.91292 1.16440 1.11414 0.90388 1.24924 0.97050 0.97418 1.00508 1.70003 1.19169 1.29266 1.36455 0.86363 0.79635 0.77801 0.82947 1.21234 1.21744 1.21021 0.93905 0.92048 0.91782 0.84261 0.85884 0.86085 0.85916 0.97993 0.90950 0.96702 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.77 37.16 0.29 -2.13 16 2 C 0.21 4.08 3.10 -69.08 -0.21 3.87 16 3 H 0.04 0.81 7.93 -51.93 -0.41 0.40 16 4 C -0.08 -1.44 4.54 -104.63 -0.47 -1.91 16 5 C -0.06 -1.19 9.19 -39.58 -0.36 -1.56 16 6 C -0.12 -1.98 10.05 -39.59 -0.40 -2.38 16 7 C -0.11 -1.64 9.79 -39.56 -0.39 -2.02 16 8 C -0.09 -1.48 6.22 -39.52 -0.25 -1.72 16 9 Br -0.08 -1.02 33.70 -68.01 -2.29 -3.31 16 10 C -0.10 -1.62 9.41 -39.55 -0.37 -1.99 16 11 N -0.59 -14.10 2.55 -174.81 -0.45 -14.55 16 12 C 0.14 3.54 8.88 59.85 0.53 4.08 16 13 C -0.26 -6.55 8.85 -15.06 -0.13 -6.69 16 14 H 0.08 1.93 5.76 -52.49 -0.30 1.62 16 15 C 0.00 -0.02 5.23 -17.43 -0.09 -0.11 16 16 N -0.90 -25.32 10.44 55.49 0.58 -24.74 16 17 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 1.10 7.46 -51.93 -0.39 0.72 16 23 H 0.06 1.21 7.37 -51.92 -0.38 0.82 16 24 H 0.14 2.99 7.94 -52.48 -0.42 2.58 16 25 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 27 H 0.12 1.87 7.99 -52.48 -0.42 1.45 16 28 H 0.00 0.03 7.90 -51.93 -0.41 -0.38 16 29 H 0.07 1.96 6.16 -51.93 -0.32 1.64 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 279.85 15.07 4.22 4.22 Total: -1.00 -27.06 279.85 -8.71 -35.77 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.88 Total: -1.01 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.86 Total: -12.58 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.13 Total: -39.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Atomic # 35 Polarization: -1.02 SS G_CDS: -2.29 Total: -3.31 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.06 -8.71 -35.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194971951.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.317 kcal (2) G-P(sol) polarization free energy of solvation -27.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds