Wall clock time and date at job start Tue Mar 31 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47150 * 2 1 4 4 C 1.50703 * 109.47057 * 240.00353 * 2 1 3 5 5 C 1.38262 * 119.99849 * 200.89223 * 4 2 1 6 6 C 1.38215 * 120.02467 * 179.97438 * 5 4 2 7 7 C 1.38244 * 120.00884 * 359.97438 * 6 5 4 8 8 C 1.38303 * 119.98535 * 359.81659 * 7 6 5 9 9 Br 1.89106 * 120.00571 * 180.20718 * 8 7 6 10 10 C 1.38200 * 119.99211 * 20.91715 * 4 2 1 11 11 N 1.46493 * 109.47077 * 120.00580 * 2 1 3 12 12 C 1.46502 * 120.00322 * 63.78189 * 11 2 1 13 13 C 1.36933 * 120.00062 * 243.77670 * 11 2 1 14 14 H 1.08004 * 119.99747 * 351.89784 * 13 11 2 15 15 C 1.38819 * 120.00252 * 171.89051 * 13 11 2 16 16 N 1.31618 * 119.99941 * 5.45463 * 15 13 11 17 17 Si 1.86802 * 119.99993 * 185.44991 * 15 13 11 18 18 H 1.48499 * 109.47045 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46858 * 120.00363 * 17 15 13 20 20 H 1.48503 * 109.46913 * 240.00019 * 17 15 13 21 21 H 1.09001 * 109.47038 * 59.99782 * 1 2 3 22 22 H 1.09001 * 109.46987 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47288 * 299.99619 * 1 2 3 24 24 H 1.08000 * 119.98457 * 359.97438 * 5 4 2 25 25 H 1.07993 * 119.99491 * 180.02562 * 6 5 4 26 26 H 1.08002 * 120.00150 * 180.02562 * 7 6 5 27 27 H 1.07991 * 120.00754 * 359.97334 * 10 4 2 28 28 H 1.09002 * 109.46809 * 3.33923 * 12 11 2 29 29 H 1.08994 * 109.47411 * 123.33941 * 12 11 2 30 30 H 1.08996 * 109.47355 * 243.34316 * 12 11 2 31 31 H 0.96997 * 120.00108 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 3.3175 -1.2196 -1.2586 6 6 3.7786 -1.8716 -2.3867 7 6 2.9547 -2.0154 -3.4874 8 6 1.6676 -1.5100 -3.4582 9 35 0.5382 -1.7115 -4.9615 10 6 1.2085 -0.8522 -2.3310 11 7 2.0183 -0.6907 1.1960 12 6 1.7341 -2.1152 1.3868 13 6 2.7406 -0.0049 2.1358 14 1 3.0625 1.0067 1.9370 15 6 3.0589 -0.6099 3.3440 16 7 2.7609 -1.8761 3.5447 17 14 3.9103 0.3732 4.6850 18 1 4.1331 1.7637 4.2138 19 1 3.0579 0.3936 5.9008 20 1 5.2164 -0.2562 5.0067 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 3.9612 -1.1078 -0.3986 25 1 4.7823 -2.2696 -2.4079 26 1 3.3149 -2.5253 -4.3687 27 1 0.2047 -0.4545 -2.3091 28 1 1.2044 -2.4998 0.5152 29 1 2.6703 -2.6589 1.5121 30 1 1.1159 -2.2466 2.2748 31 1 2.9837 -2.2989 4.3888 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194971960.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:06 Heat of formation + Delta-G solvation = 55.725018 kcal Electronic energy + Delta-G solvation = -14879.172988 eV Core-core repulsion = 12400.818824 eV Total energy + Delta-G solvation = -2478.354164 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.22073 -36.03289 -32.82076 -31.92880 -30.20808 -28.80240 -28.30109 -26.03355 -24.05929 -21.99530 -21.69088 -19.24277 -16.93572 -16.57637 -15.20018 -14.73500 -14.56536 -13.85996 -13.62560 -13.12528 -12.85911 -12.64033 -12.31569 -11.63157 -11.41039 -11.05217 -11.03501 -10.80470 -10.60723 -10.50024 -10.34387 -10.23762 -10.13983 -9.91909 -9.75616 -8.58578 -8.52401 -8.25851 -6.96355 -5.66177 -3.10150 1.49459 1.64178 1.81093 3.36988 3.43746 3.45583 4.00165 4.47730 5.08068 5.14423 5.39871 5.47386 5.52326 5.71186 5.77240 5.96709 5.99556 6.21343 6.23525 6.38343 6.44847 6.66521 6.79530 6.83898 6.86113 7.12783 7.24628 7.64499 7.72774 7.94596 8.36089 9.25008 9.86955 10.30927 11.32764 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.044424 B = 0.004491 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.137451 B = 6232.745188 C = 6477.481446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.207 3.793 3 H 0.077 0.923 4 C -0.074 4.074 5 C -0.073 4.073 6 C -0.122 4.122 7 C -0.107 4.107 8 C -0.095 4.095 9 Br -0.074 7.074 10 C -0.097 4.097 11 N -0.600 5.600 12 C 0.173 3.827 13 C -0.249 4.249 14 H 0.075 0.925 15 C -0.002 4.002 16 N -0.915 5.915 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.291 1.291 21 H 0.044 0.956 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.139 0.861 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.131 0.869 28 H -0.009 1.009 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 0.182 -15.967 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.098 3.902 3 H 0.095 0.905 4 C -0.077 4.077 5 C -0.091 4.091 6 C -0.141 4.141 7 C -0.127 4.127 8 C -0.174 4.174 9 Br 0.011 6.989 10 C -0.117 4.117 11 N -0.322 5.322 12 C 0.029 3.971 13 C -0.378 4.378 14 H 0.093 0.907 15 C -0.199 4.199 16 N -0.563 5.563 17 Si 0.737 3.263 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.156 0.844 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.149 0.851 28 H 0.009 0.991 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.311 -0.001 -16.337 16.670 hybrid contribution 0.715 0.361 1.101 1.362 sum -2.596 0.360 -15.236 15.460 Atomic orbital electron populations 1.22380 0.97819 1.01414 1.00454 1.19250 0.92196 0.94935 0.83853 0.90485 1.21083 0.93622 0.97351 0.95631 1.21386 0.95880 0.94358 0.97514 1.21162 0.99668 1.00063 0.93201 1.20947 0.92359 1.00270 0.99113 1.21655 0.95251 1.06821 0.93641 1.96610 1.65709 1.97243 1.39309 1.21160 1.00342 0.98577 0.91616 1.44075 1.62198 1.06903 1.19059 1.20964 0.98901 0.82393 0.94813 1.19396 1.26907 0.97253 0.94209 0.90724 1.24880 1.00930 0.96250 0.97816 1.70241 1.52070 1.09790 1.24188 0.86134 0.78658 0.79178 0.82312 1.20497 1.21714 1.21841 0.93677 0.93006 0.92308 0.84363 0.85770 0.85962 0.85125 0.99077 0.94259 0.93838 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 8.25 37.16 0.31 -2.51 16 2 C 0.21 4.05 3.06 -69.08 -0.21 3.84 16 3 H 0.08 1.50 7.78 -51.93 -0.40 1.10 16 4 C -0.07 -1.32 4.66 -104.63 -0.49 -1.80 16 5 C -0.07 -1.30 8.94 -39.58 -0.35 -1.65 16 6 C -0.12 -1.84 10.05 -39.59 -0.40 -2.24 16 7 C -0.11 -1.52 9.79 -39.56 -0.39 -1.91 16 8 C -0.09 -1.41 6.22 -39.52 -0.25 -1.66 16 9 Br -0.07 -0.94 33.70 -68.01 -2.29 -3.24 16 10 C -0.10 -1.54 8.87 -39.56 -0.35 -1.89 16 11 N -0.60 -14.34 2.11 -174.81 -0.37 -14.71 16 12 C 0.17 4.27 7.76 59.85 0.46 4.73 16 13 C -0.25 -6.53 9.80 -15.06 -0.15 -6.68 16 14 H 0.07 1.90 7.67 -52.48 -0.40 1.50 16 15 C 0.00 -0.06 5.46 -17.43 -0.10 -0.16 16 16 N -0.92 -26.05 9.47 55.49 0.53 -25.52 16 17 Si 0.91 21.47 29.56 -169.99 -5.02 16.45 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H 0.04 0.65 6.66 -51.93 -0.35 0.31 16 22 H 0.05 0.93 7.36 -51.93 -0.38 0.55 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.14 2.75 7.69 -52.49 -0.40 2.35 16 25 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 26 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.13 1.92 5.99 -52.49 -0.31 1.61 16 28 H -0.01 -0.21 6.85 -51.93 -0.36 -0.57 16 29 H 0.04 1.05 7.18 -51.93 -0.37 0.68 16 30 H 0.04 1.18 6.91 -51.93 -0.36 0.82 16 31 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 275.69 15.07 4.15 4.15 Total: -1.00 -27.54 275.69 -8.66 -36.19 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -3.74 Total: -1.40 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -1.91 Total: -11.93 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.16 Total: -40.23 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 35 Polarization: -0.94 SS G_CDS: -2.29 Total: -3.24 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.54 -8.66 -36.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194971960.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.919 kcal (2) G-P(sol) polarization free energy of solvation -27.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds