Wall clock time and date at job start Tue Mar 31 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47371 * 2 1 4 4 C 1.50697 * 109.47532 * 119.99836 * 2 1 3 5 5 C 1.38242 * 120.00107 * 16.18913 * 4 2 1 6 6 C 1.38228 * 120.00703 * 179.74828 * 5 4 2 7 7 C 1.38257 * 120.01996 * 0.54622 * 6 5 4 8 8 C 1.38200 * 120.01050 * 359.70464 * 7 6 5 9 9 C 1.38298 * 120.01091 * 196.45960 * 4 2 1 10 10 Br 1.89109 * 120.00763 * 0.02562 * 9 4 2 11 11 N 1.46500 * 109.47248 * 240.00181 * 2 1 3 12 12 C 1.46496 * 119.99884 * 294.69801 * 11 2 1 13 13 C 1.36929 * 120.00192 * 114.69735 * 11 2 1 14 14 H 1.08001 * 120.00193 * 9.20633 * 13 11 2 15 15 C 1.38815 * 120.00322 * 188.93102 * 13 11 2 16 16 N 1.31612 * 119.99490 * 352.99537 * 15 13 11 17 17 Si 1.86801 * 120.00208 * 172.99271 * 15 13 11 18 18 H 1.48497 * 109.47168 * 94.98108 * 17 15 13 19 19 H 1.48500 * 109.47268 * 214.98207 * 17 15 13 20 20 H 1.48503 * 109.47024 * 334.98090 * 17 15 13 21 21 H 1.09001 * 109.47285 * 299.99749 * 1 2 3 22 22 H 1.08996 * 109.47416 * 59.99903 * 1 2 3 23 23 H 1.09001 * 109.46904 * 180.02562 * 1 2 3 24 24 H 1.08002 * 119.99732 * 359.97438 * 5 4 2 25 25 H 1.07999 * 119.98686 * 180.27764 * 6 5 4 26 26 H 1.07997 * 119.99502 * 179.72965 * 7 6 5 27 27 H 1.08004 * 120.00540 * 180.02562 * 8 7 6 28 28 H 1.09005 * 109.47443 * 235.40158 * 12 11 2 29 29 H 1.09000 * 109.47567 * 355.40281 * 12 11 2 30 30 H 1.09003 * 109.47160 * 115.40486 * 12 11 2 31 31 H 0.97003 * 120.00044 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 1.1789 -1.5169 1.9599 6 6 1.6410 -2.1726 3.0856 7 6 2.9538 -2.0133 3.4889 8 6 3.8063 -1.2031 2.7632 9 6 3.3458 -0.5511 1.6332 10 35 4.5115 0.5587 0.6405 11 7 2.0183 -0.6906 -1.1962 12 6 1.7627 -2.1224 -1.3710 13 6 2.7137 0.0023 -2.1508 14 1 3.0314 1.0163 -1.9580 15 6 3.0152 -0.6006 -3.3643 16 7 2.7563 -1.8780 -3.5467 17 14 3.7885 0.4013 -4.7384 18 1 5.2644 0.2427 -4.6964 19 1 3.2764 -0.0764 -6.0479 20 1 3.4394 1.8340 -4.5631 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 0.1519 -1.6376 1.6482 25 1 0.9751 -2.8062 3.6527 26 1 3.3132 -2.5224 4.3709 27 1 4.8320 -1.0790 3.0780 28 1 2.7073 -2.6440 -1.5257 29 1 1.2724 -2.5154 -0.4804 30 1 1.1183 -2.2734 -2.2371 31 1 2.9666 -2.2992 -4.3948 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194975062.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:10 Heat of formation + Delta-G solvation = 60.839228 kcal Electronic energy + Delta-G solvation = -15209.465363 eV Core-core repulsion = 12731.332968 eV Total energy + Delta-G solvation = -2478.132395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.18954 -35.93943 -32.68210 -31.81174 -29.99137 -28.73651 -28.07756 -25.96208 -24.04025 -21.93434 -21.65453 -19.26310 -16.83971 -16.42781 -15.10616 -14.92699 -14.49611 -13.80504 -13.53974 -13.05428 -12.81538 -12.40750 -12.29044 -11.52313 -11.35689 -11.03185 -10.83336 -10.74149 -10.51497 -10.36384 -10.25645 -10.11130 -10.00841 -9.70616 -9.23119 -8.48825 -8.41018 -8.12712 -6.82808 -5.54085 -2.94387 1.52474 1.67418 2.31113 3.44288 3.50453 3.51678 3.99644 4.59786 5.13032 5.16773 5.27462 5.54113 5.59102 5.66640 5.77874 5.96065 6.02915 6.20019 6.30943 6.38580 6.55905 6.64936 6.71340 6.85459 6.89768 7.07436 7.20439 7.74679 7.84130 8.03576 8.47191 9.37003 9.98123 10.41873 11.46066 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.021606 B = 0.009115 C = 0.007325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.650666 B = 3071.031450 C = 3821.497070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.201 3.799 3 H 0.079 0.921 4 C -0.050 4.050 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.132 4.132 8 C -0.100 4.100 9 C -0.074 4.074 10 Br -0.041 7.041 11 N -0.588 5.588 12 C 0.172 3.828 13 C -0.225 4.225 14 H 0.075 0.925 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 0.900 3.100 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.281 1.281 21 H 0.042 0.958 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.129 0.871 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.041 0.959 29 H -0.010 1.010 30 H 0.041 0.959 31 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 1.998 13.217 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.092 3.908 3 H 0.097 0.903 4 C -0.055 4.055 5 C -0.134 4.134 6 C -0.132 4.132 7 C -0.152 4.152 8 C -0.120 4.120 9 C -0.154 4.154 10 Br 0.045 6.955 11 N -0.309 5.309 12 C 0.028 3.972 13 C -0.355 4.355 14 H 0.093 0.907 15 C -0.201 4.201 16 N -0.567 5.567 17 Si 0.731 3.269 18 H -0.219 1.219 19 H -0.218 1.218 20 H -0.207 1.207 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.147 0.853 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.059 0.941 29 H 0.009 0.991 30 H 0.059 0.941 31 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.109 2.325 12.616 12.829 hybrid contribution 0.308 0.005 -0.560 0.639 sum 0.417 2.329 12.056 12.286 Atomic orbital electron populations 1.22391 0.98061 1.01135 1.00525 1.19380 0.92330 0.95406 0.83708 0.90312 1.20843 0.92000 0.96554 0.96093 1.21206 1.00126 0.97086 0.94989 1.21175 0.95766 0.99277 0.97021 1.20969 0.94022 0.99922 1.00258 1.21028 0.99735 0.96929 0.94293 1.21743 0.94811 1.01700 0.97153 1.96702 1.61186 1.64220 1.73402 1.44031 1.63445 1.06052 1.17363 1.20989 0.99443 0.82432 0.94365 1.19314 1.27308 0.96606 0.92232 0.90684 1.24804 1.01425 0.96095 0.97814 1.70220 1.53561 1.09041 1.23875 0.86270 0.78755 0.79433 0.82428 1.21874 1.21796 1.20679 0.93863 0.92251 0.93000 0.85314 0.86280 0.86137 0.85895 0.94078 0.99131 0.94056 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 8.11 37.15 0.30 -2.55 16 2 C 0.20 4.08 2.18 -69.09 -0.15 3.93 16 3 H 0.08 1.64 6.97 -51.93 -0.36 1.28 16 4 C -0.05 -0.93 4.52 -104.60 -0.47 -1.41 16 5 C -0.11 -1.83 8.27 -39.58 -0.33 -2.16 16 6 C -0.11 -1.57 10.05 -39.58 -0.40 -1.97 16 7 C -0.13 -1.81 10.05 -39.59 -0.40 -2.21 16 8 C -0.10 -1.55 9.79 -39.56 -0.39 -1.94 16 9 C -0.07 -1.35 6.22 -39.52 -0.25 -1.59 16 10 Br -0.04 -0.78 30.93 -68.01 -2.10 -2.88 16 11 N -0.59 -14.39 2.69 -174.82 -0.47 -14.86 16 12 C 0.17 4.33 8.12 59.84 0.49 4.81 16 13 C -0.23 -6.03 8.80 -15.06 -0.13 -6.17 16 14 H 0.08 1.98 7.60 -52.49 -0.40 1.58 16 15 C -0.01 -0.17 5.46 -17.43 -0.10 -0.26 16 16 N -0.92 -26.82 9.48 55.49 0.53 -26.30 16 17 Si 0.90 22.31 29.56 -169.99 -5.02 17.28 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 22 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 23 H 0.05 0.90 6.16 -51.93 -0.32 0.58 16 24 H 0.13 1.90 5.96 -52.49 -0.31 1.58 16 25 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 28 H 0.04 1.15 7.11 -51.93 -0.37 0.78 16 29 H -0.01 -0.22 6.24 -51.93 -0.32 -0.55 16 30 H 0.04 1.13 7.00 -51.93 -0.36 0.76 16 31 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 271.34 15.07 4.09 4.09 Total: -1.00 -29.21 271.34 -8.50 -37.71 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -3.70 Total: -3.53 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.82 Total: -11.51 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.06 Total: -41.16 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -2.10 Total: -2.88 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.21 -8.50 -37.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194975062.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.552 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds