Wall clock time and date at job start Tue Mar 31 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47099 * 2 1 4 4 C 1.50703 * 109.46750 * 240.00312 * 2 1 3 5 5 C 1.38243 * 120.00716 * 343.44881 * 4 2 1 6 6 C 1.38224 * 120.01050 * 180.02562 * 5 4 2 7 7 C 1.38263 * 120.01818 * 0.02562 * 6 5 4 8 8 C 1.38207 * 120.01037 * 359.74725 * 7 6 5 9 9 C 1.38309 * 120.00363 * 163.47253 * 4 2 1 10 10 Br 1.89099 * 120.00769 * 359.95293 * 9 4 2 11 11 N 1.46500 * 109.47200 * 120.00409 * 2 1 3 12 12 C 1.46501 * 120.00188 * 65.20557 * 11 2 1 13 13 C 1.36939 * 119.99916 * 245.20132 * 11 2 1 14 14 H 1.08000 * 119.99481 * 23.86012 * 13 11 2 15 15 C 1.38808 * 120.00016 * 203.85849 * 13 11 2 16 16 N 1.31623 * 120.00018 * 11.21070 * 15 13 11 17 17 Si 1.86798 * 119.99848 * 191.21166 * 15 13 11 18 18 H 1.48496 * 109.47273 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47306 * 120.00138 * 17 15 13 20 20 H 1.48504 * 109.47218 * 240.00016 * 17 15 13 21 21 H 1.09003 * 109.46860 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46700 * 299.99394 * 1 2 3 23 23 H 1.08993 * 109.47521 * 59.99712 * 1 2 3 24 24 H 1.07994 * 119.99151 * 0.02562 * 5 4 2 25 25 H 1.07989 * 119.98665 * 179.97438 * 6 5 4 26 26 H 1.07997 * 119.99449 * 179.97438 * 7 6 5 27 27 H 1.08003 * 120.00090 * 180.25336 * 8 7 6 28 28 H 1.08997 * 109.47099 * 86.43813 * 12 11 2 29 29 H 1.09002 * 109.47267 * 206.43841 * 12 11 2 30 30 H 1.09006 * 109.47008 * 326.44092 * 12 11 2 31 31 H 0.97000 * 119.99527 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 1.1808 -1.5228 -1.9558 6 6 1.6415 -2.1748 -3.0842 7 6 2.9543 -2.0152 -3.4877 8 6 3.8050 -1.1994 -2.7659 9 6 3.3454 -0.5500 -1.6342 10 35 4.5105 0.5617 -0.6429 11 7 2.0184 -0.6907 1.1961 12 6 1.7610 -2.1222 1.3718 13 6 2.7156 0.0017 2.1499 14 1 2.5889 1.0703 2.2420 15 6 3.5851 -0.6698 2.9983 16 7 3.9097 -1.9213 2.7517 17 14 4.2945 0.2027 4.4899 18 1 3.7764 1.5933 4.5428 19 1 3.8949 -0.5212 5.7233 20 1 5.7760 0.2294 4.3896 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 0.1555 -1.6481 -1.6407 25 1 0.9761 -2.8097 -3.6502 26 1 3.3140 -2.5251 -4.3691 27 1 4.8293 -1.0716 -3.0836 28 1 2.5439 -2.6957 0.8758 29 1 1.7531 -2.3621 2.4351 30 1 0.7943 -2.3738 0.9354 31 1 4.5177 -2.3904 3.3444 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194975073.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:13 Heat of formation + Delta-G solvation = 54.773170 kcal Electronic energy + Delta-G solvation = -15277.172776 eV Core-core repulsion = 12798.777337 eV Total energy + Delta-G solvation = -2478.395439 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.05932 -35.88584 -32.62249 -31.65592 -30.04640 -28.62782 -28.01166 -25.92936 -24.03301 -21.93965 -21.54943 -19.22575 -16.74381 -16.33910 -15.07343 -14.86723 -14.36423 -13.86372 -13.43729 -12.95566 -12.87216 -12.39649 -12.22635 -11.62804 -11.35081 -10.95894 -10.86217 -10.71067 -10.50139 -10.35912 -10.25483 -10.04100 -9.81149 -9.79415 -9.17727 -8.43867 -8.36784 -7.95607 -6.65791 -5.65579 -3.06780 1.65204 1.78534 2.50210 3.40888 3.48899 3.49770 4.10894 4.57706 5.23165 5.26593 5.35052 5.56998 5.59364 5.71152 5.87701 6.00704 6.09053 6.25143 6.34003 6.45119 6.62508 6.70404 6.78404 6.88161 6.93447 7.13934 7.32098 7.46758 7.78013 7.89693 8.47944 9.31057 9.92343 10.43045 11.40386 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.021580 B = 0.009619 C = 0.007868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.213330 B = 2910.294943 C = 3557.674861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.194 3.806 3 H 0.079 0.921 4 C -0.050 4.050 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.136 4.136 8 C -0.100 4.100 9 C -0.071 4.071 10 Br -0.036 7.036 11 N -0.576 5.576 12 C 0.166 3.834 13 C -0.234 4.234 14 H 0.067 0.933 15 C 0.008 3.992 16 N -0.900 5.900 17 Si 0.893 3.107 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.292 1.292 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.126 0.874 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.015 0.985 29 H 0.058 0.942 30 H -0.007 1.007 31 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 2.068 -10.943 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.086 3.914 3 H 0.097 0.903 4 C -0.055 4.055 5 C -0.138 4.138 6 C -0.134 4.134 7 C -0.155 4.155 8 C -0.120 4.120 9 C -0.151 4.151 10 Br 0.051 6.949 11 N -0.296 5.296 12 C 0.021 3.979 13 C -0.364 4.364 14 H 0.085 0.915 15 C -0.190 4.190 16 N -0.544 5.544 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.219 1.219 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.144 0.856 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.011 0.989 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.088 2.384 -10.391 10.864 hybrid contribution 0.417 -0.121 0.531 0.686 sum -1.670 2.263 -9.860 10.254 Atomic orbital electron populations 1.22328 0.98158 1.01078 1.00478 1.19583 0.92278 0.95898 0.83664 0.90272 1.20832 0.92148 0.96906 0.95635 1.21142 0.99964 0.97543 0.95197 1.21123 0.95725 0.99419 0.97132 1.20930 0.94067 1.00135 1.00375 1.21017 0.99615 0.96963 0.94415 1.21738 0.94906 1.01561 0.96907 1.96711 1.61122 1.63721 1.73391 1.44039 1.63213 1.06424 1.15940 1.20726 0.93322 0.83454 1.00351 1.19158 1.17502 0.92325 1.07404 0.91490 1.24952 0.97385 0.96559 1.00140 1.70071 1.36686 1.10208 1.37484 0.86341 0.78784 0.79122 0.83350 1.20331 1.21772 1.21871 0.92966 0.92463 0.93706 0.85600 0.86504 0.86337 0.86085 0.96647 0.92353 0.98878 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 8.11 37.16 0.30 -2.48 16 2 C 0.19 3.98 2.23 -69.08 -0.15 3.82 16 3 H 0.08 1.68 7.07 -51.93 -0.37 1.31 16 4 C -0.05 -0.97 4.69 -104.59 -0.49 -1.46 16 5 C -0.12 -1.98 9.11 -39.58 -0.36 -2.34 16 6 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 7 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 8 C -0.10 -1.69 9.79 -39.56 -0.39 -2.07 16 9 C -0.07 -1.38 6.22 -39.52 -0.25 -1.63 16 10 Br -0.04 -0.73 31.00 -68.01 -2.11 -2.84 16 11 N -0.58 -13.95 2.68 -174.81 -0.47 -14.41 16 12 C 0.17 4.08 8.23 59.85 0.49 4.57 16 13 C -0.23 -6.17 8.57 -15.06 -0.13 -6.30 16 14 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 15 C 0.01 0.22 5.08 -17.43 -0.09 0.13 16 16 N -0.90 -25.79 10.71 55.49 0.59 -25.20 16 17 Si 0.89 21.86 29.57 -169.99 -5.03 16.83 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 21 H 0.05 0.88 5.53 -51.93 -0.29 0.59 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 24 H 0.13 1.90 5.96 -52.49 -0.31 1.59 16 25 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 26 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 28 H 0.02 0.41 7.81 -51.93 -0.41 0.01 16 29 H 0.06 1.56 6.75 -51.93 -0.35 1.21 16 30 H -0.01 -0.16 6.71 -51.93 -0.35 -0.51 16 31 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 273.84 15.07 4.13 4.13 Total: -1.00 -28.76 273.84 -8.47 -37.23 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -3.73 Total: -3.49 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.86 Total: -12.25 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.13 Total: -39.61 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.11 Total: -2.84 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.76 -8.47 -37.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194975073.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.003 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds