Wall clock time and date at job start Tue Mar 31 2020 05:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38176 * 120.04757 * 2 1 4 4 Br 1.89095 * 119.96555 * 359.97438 * 3 2 1 5 5 C 1.38405 * 120.06249 * 180.25688 * 3 2 1 6 6 C 1.38331 * 120.15640 * 359.43973 * 5 3 2 7 7 C 1.38048 * 120.09515 * 0.55817 * 6 5 3 8 8 C 1.38993 * 120.04952 * 179.97438 * 2 1 3 9 9 N 1.39529 * 120.07568 * 0.04871 * 8 2 1 10 10 C 1.34779 * 119.99904 * 204.84845 * 9 8 2 11 11 O 1.21741 * 120.00150 * 5.51458 * 10 9 8 12 12 C 1.46173 * 119.99990 * 185.52054 * 10 9 8 13 13 H 1.07995 * 119.99818 * 5.01112 * 12 10 9 14 14 C 1.40118 * 119.99792 * 185.01436 * 12 10 9 15 15 N 1.30634 * 120.00077 * 354.97713 * 14 12 10 16 16 Si 1.86804 * 119.99752 * 174.97963 * 14 12 10 17 17 H 1.48505 * 109.46985 * 95.00088 * 16 14 12 18 18 H 1.48501 * 109.46815 * 214.99735 * 16 14 12 19 19 H 1.48493 * 109.47209 * 334.99697 * 16 14 12 20 20 H 1.08998 * 109.46792 * 90.00769 * 1 2 3 21 21 H 1.09001 * 109.47272 * 209.99954 * 1 2 3 22 22 H 1.08994 * 109.47304 * 329.99903 * 1 2 3 23 23 H 1.07996 * 119.91528 * 179.70565 * 5 3 2 24 24 H 1.08008 * 119.95265 * 180.25837 * 6 5 3 25 25 H 1.07994 * 120.03001 * 179.70275 * 7 6 5 26 26 H 0.97002 * 120.00174 * 24.84223 * 9 8 2 27 27 H 0.97012 * 120.00022 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1988 1.1961 0.0000 4 35 1.2537 2.8339 -0.0007 5 6 3.5829 1.1964 -0.0054 6 6 4.2781 0.0006 0.0009 7 6 3.5935 -1.1982 0.0010 8 6 2.2029 -1.2031 0.0005 9 7 1.5079 -2.4130 0.0001 10 6 2.0904 -3.5249 0.4910 11 8 3.1818 -3.4550 1.0258 12 6 1.4116 -4.8148 0.3813 13 1 0.4823 -4.8913 -0.1637 14 6 1.9666 -5.9519 0.9831 15 7 3.1376 -5.8811 1.5578 16 14 1.0319 -7.5692 0.9637 17 1 1.4879 -8.3906 -0.1864 18 1 1.2875 -8.3038 2.2288 19 1 -0.4224 -7.2989 0.8334 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 4.1212 2.1326 -0.0102 24 1 5.3582 0.0047 0.0009 25 1 4.1374 -2.1312 0.0011 26 1 0.6056 -2.4539 -0.3535 27 1 3.5217 -6.6683 1.9748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228885501.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:10 Heat of formation + Delta-G solvation = -16.883995 kcal Electronic energy + Delta-G solvation = -14323.045478 eV Core-core repulsion = 11705.709657 eV Total energy + Delta-G solvation = -2617.335821 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.54205 -37.11758 -33.76777 -32.83905 -32.36253 -30.48929 -28.56186 -26.73168 -25.98624 -22.33713 -20.94788 -19.71629 -17.72057 -16.37989 -15.69294 -15.23178 -14.81221 -14.15891 -13.77835 -13.42278 -12.94358 -12.64257 -12.51692 -12.11671 -11.86370 -11.44047 -11.19177 -11.00143 -10.92669 -10.69838 -10.53347 -10.39477 -9.89174 -9.42716 -8.97019 -8.24526 -7.79452 -7.12659 -6.43637 -4.90837 1.64888 1.83988 1.91968 3.02054 3.10034 3.13690 3.92495 4.05351 4.44222 4.51367 5.18280 5.30877 5.51292 5.53297 5.81196 5.87515 5.95892 6.10758 6.16095 6.42528 6.62224 6.92197 6.98255 7.18726 7.26078 7.62316 7.93697 8.06237 8.76420 9.09041 10.26570 10.46429 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.046030 B = 0.004450 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.154253 B = 6290.740603 C = 6810.411671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.126 4.126 3 C -0.066 4.066 4 Br -0.072 7.072 5 C -0.141 4.141 6 C -0.100 4.100 7 C -0.124 4.124 8 C 0.201 3.799 9 N -0.690 5.690 10 C 0.541 3.459 11 O -0.557 6.557 12 C -0.537 4.537 13 H 0.073 0.927 14 C 0.087 3.913 15 N -0.756 5.756 16 Si 0.913 3.087 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.263 1.263 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.121 0.879 24 H 0.124 0.876 25 H 0.158 0.842 26 H 0.395 0.605 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.992 12.975 -3.818 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.132 4.132 3 C -0.145 4.145 4 Br 0.014 6.986 5 C -0.162 4.162 6 C -0.119 4.119 7 C -0.145 4.145 8 C 0.100 3.900 9 N -0.332 5.332 10 C 0.348 3.652 11 O -0.439 6.439 12 C -0.573 4.573 13 H 0.092 0.908 14 C -0.135 4.135 15 N -0.384 5.384 16 Si 0.737 3.263 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.187 1.187 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.139 0.861 24 H 0.142 0.858 25 H 0.175 0.825 26 H 0.229 0.771 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.444 13.390 -3.321 14.219 hybrid contribution -0.654 -1.113 -0.116 1.296 sum -4.098 12.277 -3.438 13.392 Atomic orbital electron populations 1.20800 0.90915 1.03318 1.02247 1.19382 0.96072 0.90708 1.07067 1.21221 0.94219 0.89573 1.09499 1.96538 1.76377 1.27860 1.97869 1.20792 0.91721 0.98555 1.05135 1.20998 0.99607 0.91591 0.99740 1.21832 0.93154 0.99978 0.99548 1.17767 0.91689 0.85674 0.94875 1.44223 1.18316 1.06974 1.63653 1.18421 0.85911 0.82667 0.78197 1.90583 1.21652 1.85111 1.46591 1.20858 1.09364 0.91015 1.36022 0.90845 1.25747 0.94312 1.00270 0.93186 1.69978 1.13719 1.29965 1.24753 0.86253 0.80542 0.81087 0.78382 1.19587 1.20175 1.18661 0.91335 0.91268 0.90927 0.86130 0.85782 0.82514 0.77097 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 8.99 36.00 0.32 -1.38 15 2 C -0.13 -2.23 5.90 -104.37 -0.62 -2.85 15 3 C -0.07 -1.08 6.22 -39.54 -0.25 -1.32 15 4 Br -0.07 -0.97 31.78 -68.01 -2.16 -3.13 15 5 C -0.14 -2.25 9.79 -39.49 -0.39 -2.63 15 6 C -0.10 -1.72 10.04 -39.62 -0.40 -2.12 15 7 C -0.12 -2.60 8.71 -39.35 -0.34 -2.94 15 8 C 0.20 4.15 6.41 -83.77 -0.54 3.62 15 9 N -0.69 -15.08 4.96 -11.20 -0.06 -15.13 15 10 C 0.54 14.48 7.54 -13.07 -0.10 14.38 15 11 O -0.56 -16.68 12.19 5.15 0.06 -16.62 15 12 C -0.54 -14.20 9.53 -35.69 -0.34 -14.54 15 13 H 0.07 1.76 7.85 -52.49 -0.41 1.35 15 14 C 0.09 2.27 5.50 -17.36 -0.10 2.17 15 15 N -0.76 -21.32 11.84 55.55 0.66 -20.66 15 16 Si 0.91 18.97 29.56 -169.99 -5.03 13.94 15 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 19 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 20 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 21 H 0.07 1.02 6.99 -51.93 -0.36 0.66 15 22 H 0.07 0.99 6.64 -51.93 -0.35 0.64 15 23 H 0.12 1.63 8.06 -52.49 -0.42 1.20 15 24 H 0.12 1.81 8.06 -52.48 -0.42 1.39 15 25 H 0.16 3.76 5.78 -52.49 -0.30 3.45 15 26 H 0.40 7.43 7.38 -40.82 -0.30 7.13 15 27 H 0.27 6.96 8.29 -40.81 -0.34 6.62 15 LS Contribution 257.47 15.07 3.88 3.88 Total: -1.00 -30.15 257.47 -7.51 -37.66 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -2.13 Total: 7.68 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.74 Total: -7.61 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.60 Total: -35.79 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.06 Total: -16.62 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Atomic # 35 Polarization: -0.97 SS G_CDS: -2.16 Total: -3.13 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.15 -7.51 -37.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228885501.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.771 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds