Wall clock time and date at job start Tue Mar 31 2020 05:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38176 * 120.04757 * 2 1 4 4 Br 1.89095 * 119.96555 * 359.97438 * 3 2 1 5 5 C 1.38405 * 120.06249 * 180.25688 * 3 2 1 6 6 C 1.38331 * 120.15640 * 359.43973 * 5 3 2 7 7 C 1.38048 * 120.09515 * 0.55817 * 6 5 3 8 8 C 1.38993 * 120.04952 * 179.97438 * 2 1 3 9 9 N 1.39529 * 120.07568 * 0.04871 * 8 2 1 10 10 C 1.34779 * 119.99904 * 204.84845 * 9 8 2 11 11 O 1.21741 * 120.00150 * 5.51458 * 10 9 8 12 12 C 1.46173 * 119.99990 * 185.52054 * 10 9 8 13 13 H 1.07995 * 119.99818 * 5.01112 * 12 10 9 14 14 C 1.40118 * 119.99792 * 185.01436 * 12 10 9 15 15 N 1.30634 * 120.00077 * 354.97713 * 14 12 10 16 16 Si 1.86804 * 119.99752 * 174.97963 * 14 12 10 17 17 H 1.48505 * 109.46985 * 95.00088 * 16 14 12 18 18 H 1.48501 * 109.46815 * 214.99735 * 16 14 12 19 19 H 1.48493 * 109.47209 * 334.99697 * 16 14 12 20 20 H 1.08998 * 109.46792 * 90.00769 * 1 2 3 21 21 H 1.09001 * 109.47272 * 209.99954 * 1 2 3 22 22 H 1.08994 * 109.47304 * 329.99903 * 1 2 3 23 23 H 1.07996 * 119.91528 * 179.70565 * 5 3 2 24 24 H 1.08008 * 119.95265 * 180.25837 * 6 5 3 25 25 H 1.07994 * 120.03001 * 179.70275 * 7 6 5 26 26 H 0.97002 * 120.00174 * 24.84223 * 9 8 2 27 27 H 0.97012 * 120.00022 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1988 1.1961 0.0000 4 35 1.2537 2.8339 -0.0007 5 6 3.5829 1.1964 -0.0054 6 6 4.2781 0.0006 0.0009 7 6 3.5935 -1.1982 0.0010 8 6 2.2029 -1.2031 0.0005 9 7 1.5079 -2.4130 0.0001 10 6 2.0904 -3.5249 0.4910 11 8 3.1818 -3.4550 1.0258 12 6 1.4116 -4.8148 0.3813 13 1 0.4823 -4.8913 -0.1637 14 6 1.9666 -5.9519 0.9831 15 7 3.1376 -5.8811 1.5578 16 14 1.0319 -7.5692 0.9637 17 1 1.4879 -8.3906 -0.1864 18 1 1.2875 -8.3038 2.2288 19 1 -0.4224 -7.2989 0.8334 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 4.1212 2.1326 -0.0102 24 1 5.3582 0.0047 0.0009 25 1 4.1374 -2.1312 0.0011 26 1 0.6056 -2.4539 -0.3535 27 1 3.5217 -6.6683 1.9748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228885501.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:10 Heat of formation + Delta-G solvation = -35.755346 kcal Electronic energy + Delta-G solvation = -14323.863801 eV Core-core repulsion = 11705.709657 eV Total energy + Delta-G solvation = -2618.154145 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.11582 -38.89648 -35.50393 -34.67570 -33.88781 -31.91332 -30.05767 -28.41259 -27.52607 -23.98600 -22.37842 -21.47208 -19.53835 -17.98469 -17.60954 -16.66626 -16.41730 -15.80897 -15.23289 -14.91054 -14.63234 -14.39821 -14.02817 -13.38236 -13.23676 -13.12675 -12.84477 -12.73821 -12.37320 -12.31351 -12.03302 -11.90454 -11.09053 -11.05676 -10.84058 -9.90604 -9.52048 -8.75637 -8.39501 -6.96792 0.22491 0.39785 0.62715 1.39673 1.40548 1.57063 2.19737 2.31456 2.76613 2.86497 3.53941 3.87447 4.03451 4.15051 4.48712 4.59425 4.68955 4.74372 4.78381 5.18972 5.23798 5.26866 5.42508 5.53297 5.69223 5.80402 6.12510 6.29475 6.75606 7.27041 8.29590 8.53283 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.046030 B = 0.004450 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.154253 B = 6290.740603 C = 6810.411671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C -0.076 4.076 4 Br -0.034 7.034 5 C -0.126 4.126 6 C -0.098 4.098 7 C -0.153 4.153 8 C 0.167 3.833 9 N -0.684 5.684 10 C 0.528 3.472 11 O -0.601 6.601 12 C -0.564 4.564 13 H 0.093 0.907 14 C 0.031 3.969 15 N -0.810 5.810 16 Si 1.000 3.000 17 H -0.262 1.262 18 H -0.272 1.272 19 H -0.247 1.247 20 H 0.089 0.911 21 H 0.064 0.936 22 H 0.086 0.914 23 H 0.154 0.846 24 H 0.148 0.852 25 H 0.116 0.884 26 H 0.408 0.592 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 14.318 -4.344 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.126 4.126 3 C -0.155 4.155 4 Br 0.051 6.949 5 C -0.147 4.147 6 C -0.118 4.118 7 C -0.174 4.174 8 C 0.068 3.932 9 N -0.327 5.327 10 C 0.335 3.665 11 O -0.487 6.487 12 C -0.600 4.600 13 H 0.111 0.889 14 C -0.186 4.186 15 N -0.439 5.439 16 Si 0.819 3.181 17 H -0.187 1.187 18 H -0.197 1.197 19 H -0.170 1.170 20 H 0.107 0.893 21 H 0.083 0.917 22 H 0.105 0.895 23 H 0.172 0.828 24 H 0.165 0.835 25 H 0.134 0.866 26 H 0.244 0.756 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.113 14.796 -3.876 16.127 hybrid contribution -0.124 -1.290 0.012 1.296 sum -5.238 13.506 -3.864 14.992 Atomic orbital electron populations 1.20874 0.88795 1.03777 1.03709 1.19648 0.97627 0.89949 1.05371 1.21538 0.94891 0.90823 1.08276 1.96574 1.75636 1.24925 1.97722 1.21176 0.91847 0.99127 1.02590 1.21217 1.00875 0.90818 0.98845 1.21634 0.93751 0.99839 1.02212 1.17968 0.91801 0.86147 0.97293 1.43741 1.18738 1.06650 1.63551 1.18751 0.85546 0.84198 0.78009 1.90553 1.23423 1.86212 1.48500 1.21398 1.10252 0.91560 1.36740 0.88851 1.26984 0.95017 1.04602 0.91965 1.70134 1.15980 1.31616 1.26141 0.84961 0.79386 0.75160 0.78592 1.18650 1.19728 1.17017 0.89271 0.91693 0.89525 0.82788 0.83459 0.86626 0.75619 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.13 8.99 71.23 0.64 -2.49 15 2 C -0.12 -4.11 5.90 -19.70 -0.12 -4.23 15 3 C -0.08 -2.30 6.22 22.29 0.14 -2.16 15 4 Br -0.03 -0.80 31.78 -20.37 -0.65 -1.45 15 5 C -0.13 -3.74 9.79 22.33 0.22 -3.52 15 6 C -0.10 -3.35 10.04 22.25 0.22 -3.13 15 7 C -0.15 -6.69 8.71 22.42 0.20 -6.49 15 8 C 0.17 7.06 6.41 38.29 0.25 7.30 15 9 N -0.68 -30.85 4.96 -307.54 -1.52 -32.37 15 10 C 0.53 29.58 7.54 86.30 0.65 30.23 15 11 O -0.60 -38.30 12.19 -4.48 -0.05 -38.36 15 12 C -0.56 -30.52 9.53 24.79 0.24 -30.28 15 13 H 0.09 4.48 7.85 -2.91 -0.02 4.45 15 14 C 0.03 1.66 5.50 85.33 0.47 2.13 15 15 N -0.81 -47.46 11.84 21.85 0.26 -47.20 15 16 Si 1.00 38.97 29.56 68.60 2.03 41.00 15 17 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 18 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 19 H -0.25 -8.91 7.11 99.48 0.71 -8.20 15 20 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 21 H 0.06 1.84 6.99 -2.39 -0.02 1.82 15 22 H 0.09 2.11 6.64 -2.39 -0.02 2.09 15 23 H 0.15 3.52 8.06 -2.91 -0.02 3.50 15 24 H 0.15 4.19 8.06 -2.91 -0.02 4.17 15 25 H 0.12 6.03 5.78 -2.91 -0.02 6.02 15 26 H 0.41 15.55 7.38 -92.71 -0.68 14.86 15 27 H 0.28 14.74 8.29 -92.70 -0.77 13.97 15 Total: -1.00 -68.45 257.47 3.49 -64.96 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.53 Total: 26.07 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 2.90 Total: -12.65 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -1.27 Total: -79.57 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.05 Total: -38.36 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -0.65 Total: -1.45 kcal Total: -68.45 3.49 -64.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228885501.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.206 kcal (2) G-P(sol) polarization free energy of solvation -68.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds