Wall clock time and date at job start Tue Mar 31 2020 05:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38332 * 119.95281 * 2 1 4 4 C 1.38409 * 120.15374 * 179.97438 * 3 2 1 5 5 Br 1.89099 * 119.96658 * 180.02562 * 4 3 2 6 6 C 1.38169 * 120.06266 * 0.04258 * 4 3 2 7 7 C 1.38988 * 119.91065 * 359.97438 * 6 4 3 8 8 N 1.39525 * 120.07854 * 179.97438 * 7 6 4 9 9 C 1.34776 * 119.99790 * 144.89274 * 8 7 6 10 10 O 1.21746 * 120.00235 * 4.60849 * 9 8 7 11 11 C 1.46170 * 120.00364 * 184.61124 * 9 8 7 12 12 H 1.08000 * 119.99616 * 0.02562 * 11 9 8 13 13 C 1.40122 * 120.00487 * 179.97438 * 11 9 8 14 14 N 1.30638 * 119.99554 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00148 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46915 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46897 * 119.99967 * 15 13 11 18 18 H 1.48495 * 109.47070 * 240.00076 * 15 13 11 19 19 C 1.38048 * 119.94941 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47017 * 269.98139 * 1 2 3 21 21 H 1.09004 * 109.47083 * 29.97882 * 1 2 3 22 22 H 1.08996 * 109.47616 * 149.97834 * 1 2 3 23 23 H 1.08001 * 119.92401 * 359.97438 * 3 2 1 24 24 H 1.08002 * 120.03988 * 180.25139 * 6 4 3 25 25 H 0.96994 * 120.00118 * 324.89210 * 8 7 6 26 26 H 0.97003 * 119.99886 * 179.97438 * 14 13 11 27 27 H 1.08000 * 120.03690 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1986 0.0000 4 6 3.5817 1.2034 0.0005 5 35 4.5205 2.8449 0.0013 6 6 4.2781 0.0100 0.0002 7 6 3.5868 -1.1958 -0.0002 8 7 4.2864 -2.4029 -0.0011 9 6 3.7985 -3.4651 0.6698 10 8 2.7077 -3.3975 1.2064 11 6 4.5788 -4.6982 0.7534 12 1 5.5466 -4.7581 0.2779 13 6 4.0717 -5.8024 1.4514 14 7 2.9012 -5.7297 2.0270 15 14 5.0686 -7.3785 1.5575 16 1 6.3495 -7.2041 0.8268 17 1 5.3503 -7.6910 2.9817 18 1 4.2988 -8.4930 0.9490 19 6 2.1962 -1.1961 -0.0005 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8897 -0.5141 23 1 1.6556 2.1327 -0.0004 24 1 5.3581 0.0142 0.0047 25 1 5.1240 -2.4777 -0.4845 26 1 2.5500 -6.4942 2.5099 27 1 1.6559 -2.1313 -0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230235025.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:13 Heat of formation + Delta-G solvation = -21.723347 kcal Electronic energy + Delta-G solvation = -14150.661040 eV Core-core repulsion = 11533.115369 eV Total energy + Delta-G solvation = -2617.545671 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.41102 -37.18216 -33.82485 -32.79302 -32.42542 -30.20535 -28.61148 -26.63762 -26.29519 -22.28537 -20.98334 -19.68628 -17.57944 -16.22995 -15.69201 -15.44400 -14.90238 -14.15879 -13.61474 -13.35597 -12.88326 -12.74013 -12.50163 -12.08780 -12.00659 -11.43122 -11.22307 -11.08959 -10.87934 -10.70263 -10.41634 -10.35637 -10.09366 -9.27980 -8.94131 -8.25215 -7.79056 -7.25591 -6.41042 -4.88566 1.62604 1.78113 1.88112 3.02524 3.11293 3.15642 3.93675 4.03726 4.41877 4.52179 5.13748 5.42513 5.52184 5.57181 5.73289 5.87021 5.90768 6.00540 6.25377 6.30857 6.55023 6.92498 6.96684 7.18981 7.25002 7.64004 7.95164 8.08804 8.79091 9.12516 10.30267 10.49577 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.031403 B = 0.004509 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.432231 B = 6208.109711 C = 6974.304043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.067 4.067 3 C -0.137 4.137 4 C -0.063 4.063 5 Br -0.073 7.073 6 C -0.154 4.154 7 C 0.200 3.800 8 N -0.698 5.698 9 C 0.542 3.458 10 O -0.559 6.559 11 C -0.537 4.537 12 H 0.073 0.927 13 C 0.086 3.914 14 N -0.758 5.758 15 Si 0.914 3.086 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.114 4.114 20 H 0.070 0.930 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.122 0.878 24 H 0.126 0.874 25 H 0.395 0.605 26 H 0.272 0.728 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.237 12.908 -4.855 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.069 4.069 3 C -0.158 4.158 4 C -0.143 4.143 5 Br 0.012 6.988 6 C -0.177 4.177 7 C 0.099 3.901 8 N -0.341 5.341 9 C 0.349 3.651 10 O -0.441 6.441 11 C -0.572 4.572 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.386 5.386 15 Si 0.738 3.262 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.199 1.199 19 C -0.135 4.135 20 H 0.089 0.911 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.140 0.860 24 H 0.144 0.856 25 H 0.229 0.771 26 H 0.083 0.917 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.696 13.352 -4.317 14.049 hybrid contribution 0.850 -1.120 -0.073 1.408 sum 1.545 12.232 -4.390 13.087 Atomic orbital electron populations 1.20731 0.91012 1.02353 1.02381 1.19761 0.96005 0.92255 0.98842 1.20683 0.91673 0.97967 1.05500 1.21263 0.94274 0.90192 1.08553 1.96590 1.76256 1.27973 1.97947 1.20783 0.99650 0.90165 1.07151 1.17856 0.91567 0.86182 0.94448 1.44155 1.25943 1.09733 1.54310 1.18429 0.86623 0.82178 0.77847 1.90619 1.22055 1.82155 1.49271 1.20881 1.04817 0.95789 1.35762 0.90853 1.25751 0.94635 0.99832 0.93311 1.69989 1.15279 1.30080 1.23233 0.86210 0.80358 0.80985 0.78679 1.18601 1.19962 1.19948 1.21559 0.93188 0.98916 0.99826 0.91130 0.91931 0.91343 0.86039 0.85606 0.77140 0.91714 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.01 36.00 0.36 -1.13 15 2 C -0.07 -1.15 5.88 -104.66 -0.61 -1.77 15 3 C -0.14 -2.18 9.44 -39.48 -0.37 -2.55 15 4 C -0.06 -1.03 6.22 -39.54 -0.25 -1.28 15 5 Br -0.07 -0.99 33.70 -68.01 -2.29 -3.28 15 6 C -0.15 -2.73 9.71 -39.33 -0.38 -3.11 15 7 C 0.20 4.11 6.29 -83.77 -0.53 3.58 15 8 N -0.70 -15.32 5.32 -11.20 -0.06 -15.38 15 9 C 0.54 14.64 7.58 -13.08 -0.10 14.54 15 10 O -0.56 -16.89 12.45 5.15 0.06 -16.83 15 11 C -0.54 -14.32 9.53 -35.69 -0.34 -14.66 15 12 H 0.07 1.78 7.85 -52.49 -0.41 1.37 15 13 C 0.09 2.27 5.50 -17.35 -0.10 2.18 15 14 N -0.76 -21.52 11.82 55.55 0.66 -20.87 15 15 Si 0.91 19.13 29.56 -169.99 -5.02 14.11 15 16 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 18 H -0.27 -5.64 7.11 56.52 0.40 -5.23 15 19 C -0.11 -2.35 8.34 -39.34 -0.33 -2.68 15 20 H 0.07 0.95 8.14 -51.93 -0.42 0.52 15 21 H 0.06 0.71 8.08 -51.93 -0.42 0.29 15 22 H 0.07 0.93 8.08 -51.93 -0.42 0.52 15 23 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 24 H 0.13 2.01 8.06 -52.49 -0.42 1.59 15 25 H 0.40 7.39 8.80 -40.82 -0.36 7.04 15 26 H 0.27 6.98 8.29 -40.82 -0.34 6.64 15 27 H 0.15 3.49 6.22 -52.49 -0.33 3.16 15 LS Contribution 264.26 15.07 3.98 3.98 Total: -1.00 -30.55 264.26 -7.66 -38.21 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -2.34 Total: 6.94 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.65 Total: -6.88 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.60 Total: -36.25 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.06 Total: -16.83 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 35 Polarization: -0.99 SS G_CDS: -2.29 Total: -3.28 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.55 -7.66 -38.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230235025.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.484 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds