Wall clock time and date at job start Tue Mar 31 2020 05:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.38234 * 120.00769 * 99.99994 * 13 12 10 15 15 C 1.38221 * 120.01673 * 179.97438 * 14 13 12 16 16 C 1.38265 * 120.01367 * 0.02562 * 15 14 13 17 17 C 1.38200 * 120.00970 * 359.97438 * 16 15 14 18 18 C 1.38302 * 120.00510 * 279.72213 * 13 12 10 19 19 Br 1.89105 * 120.00953 * 0.02562 * 18 13 12 20 20 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 21 21 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 22 22 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 23 23 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 24 24 H 1.08005 * 119.99257 * 359.97438 * 14 13 12 25 25 H 1.07993 * 119.99659 * 179.97438 * 15 14 13 26 26 H 1.07997 * 119.99399 * 179.97438 * 16 15 14 27 27 H 1.08007 * 119.99926 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 6 2.2233 -6.0083 -0.0016 14 6 2.5146 -6.6694 1.1769 15 6 3.4124 -7.7203 1.1766 16 6 4.0200 -8.1105 -0.0025 17 6 3.7294 -7.4502 -1.1813 18 6 2.8265 -6.4020 -1.1823 19 35 2.4231 -5.5027 -2.7962 20 1 -0.4850 0.8401 -0.0004 21 1 0.3535 -2.3906 0.0002 22 1 0.6170 -4.9209 0.8886 23 1 0.6176 -4.9205 -0.8913 24 1 2.0405 -6.3646 2.0983 25 1 3.6400 -8.2362 2.0976 26 1 4.7217 -8.9314 -0.0024 27 1 4.2038 -7.7554 -2.1024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238070782.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:32 Heat of formation + Delta-G solvation = -16.045672 kcal Electronic energy + Delta-G solvation = -14196.336786 eV Core-core repulsion = 11579.037317 eV Total energy + Delta-G solvation = -2617.299469 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.39036 -37.76125 -33.97076 -32.62397 -31.81123 -31.13377 -29.10287 -27.37180 -24.56422 -22.29617 -21.45780 -19.15246 -17.85235 -16.44039 -15.88181 -15.46666 -14.93019 -14.48446 -13.88306 -13.60820 -13.23835 -13.04079 -12.83371 -12.11604 -11.56503 -11.53509 -11.09292 -11.03001 -10.86953 -10.51015 -10.41814 -10.17918 -9.77732 -9.45873 -8.76816 -8.45239 -8.22542 -7.92728 -6.38068 -3.78522 1.33221 1.48808 2.00463 3.22288 3.27629 3.32349 3.79601 3.95010 4.22069 4.86054 4.98366 5.05371 5.22073 5.28399 5.43575 5.54925 5.74631 5.90114 6.01522 6.09973 6.33838 6.44223 6.53840 6.66236 7.00095 7.58575 8.08649 8.64357 9.21062 9.57745 10.09211 10.79654 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.005959 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.685690 B = 4698.030418 C = 5262.523177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.561 5.561 10 C 0.451 3.549 11 O -0.583 6.583 12 C -0.111 4.111 13 C -0.014 4.014 14 C -0.108 4.108 15 C -0.108 4.108 16 C -0.127 4.127 17 C -0.094 4.094 18 C -0.072 4.072 19 Br -0.048 7.048 20 H 0.271 0.729 21 H 0.392 0.608 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.128 0.872 25 H 0.124 0.876 26 H 0.125 0.875 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 -15.006 -2.107 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.197 5.197 10 C 0.236 3.764 11 O -0.468 6.468 12 C -0.151 4.151 13 C -0.017 4.017 14 C -0.127 4.127 15 C -0.126 4.126 16 C -0.146 4.146 17 C -0.114 4.114 18 C -0.152 4.152 19 Br 0.038 6.962 20 H 0.081 0.919 21 H 0.226 0.774 22 H 0.109 0.891 23 H 0.113 0.887 24 H 0.146 0.854 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.152 -14.479 -2.726 14.890 hybrid contribution -0.091 0.725 0.375 0.821 sum 2.061 -13.754 -2.352 14.105 Atomic orbital electron populations 1.69607 1.05891 1.28181 1.50693 1.25236 0.95613 0.99622 0.97420 0.85945 0.78785 0.80598 0.79060 1.19925 1.20993 1.19938 1.19645 0.93309 0.82214 1.47487 0.88019 1.41816 1.09149 1.04452 1.64326 1.19493 0.88180 0.84269 0.84416 1.90543 1.13616 1.87093 1.55527 1.20790 0.97408 0.92586 1.04316 1.19339 0.95965 0.94534 0.91837 1.21018 0.98685 0.95891 0.97129 1.21162 0.96427 0.96946 0.98074 1.21028 1.00660 1.00526 0.92363 1.21014 0.96590 0.94834 0.98973 1.21661 1.02333 0.98801 0.92378 1.96683 1.93635 1.78096 1.27795 0.91869 0.77437 0.89129 0.88690 0.85412 0.85781 0.85682 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.74 13.05 55.50 0.72 -24.02 15 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 15 3 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 15 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 15 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 15 9 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 15 10 C 0.45 10.74 7.41 -10.98 -0.08 10.66 15 11 O -0.58 -15.90 15.53 5.55 0.09 -15.81 15 12 C -0.11 -2.02 5.25 -29.03 -0.15 -2.17 15 13 C -0.01 -0.25 4.42 -104.60 -0.46 -0.71 15 14 C -0.11 -1.62 9.67 -39.59 -0.38 -2.00 15 15 C -0.11 -1.37 10.05 -39.58 -0.40 -1.77 15 16 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 15 17 C -0.09 -1.35 9.79 -39.56 -0.39 -1.73 15 18 C -0.07 -1.22 6.11 -39.52 -0.24 -1.47 15 19 Br -0.05 -0.82 31.69 -68.01 -2.16 -2.98 15 20 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 21 H 0.39 9.63 7.90 -40.82 -0.32 9.31 15 22 H 0.09 1.42 8.01 -51.93 -0.42 1.01 15 23 H 0.09 1.63 7.13 -51.93 -0.37 1.26 15 24 H 0.13 1.68 8.04 -52.48 -0.42 1.26 15 25 H 0.12 1.20 8.06 -52.49 -0.42 0.78 15 26 H 0.13 1.17 8.06 -52.49 -0.42 0.74 15 27 H 0.13 1.55 8.06 -52.48 -0.42 1.13 15 LS Contribution 265.07 15.07 3.99 3.99 Total: -1.00 -31.48 265.07 -7.48 -38.97 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -2.31 Total: 7.17 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.74 Total: -9.17 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.67 Total: -38.47 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.09 Total: -15.81 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 35 Polarization: -0.82 SS G_CDS: -2.16 Total: -2.98 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.48 -7.48 -38.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238070782.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.923 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds