Wall clock time and date at job start Tue Mar 31 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38265 * 119.99265 * 2 1 4 4 C 1.38201 * 120.01010 * 179.97438 * 3 2 1 5 5 C 1.38347 * 119.98765 * 0.02776 * 4 3 2 6 6 Br 1.89107 * 120.00508 * 179.97438 * 5 4 3 7 7 C 1.38300 * 119.98171 * 359.97438 * 5 4 3 8 8 C 1.38221 * 119.99072 * 179.72436 * 2 1 3 9 9 C 1.50705 * 119.99054 * 0.02562 * 8 2 1 10 10 N 1.46503 * 109.46761 * 80.00518 * 9 8 2 11 11 C 1.46497 * 120.00047 * 269.99344 * 10 9 8 12 12 C 1.36937 * 119.99838 * 90.00119 * 10 9 8 13 13 H 1.07998 * 120.00347 * 23.50048 * 12 10 9 14 14 C 1.38812 * 119.99485 * 203.50554 * 12 10 9 15 15 N 1.31620 * 120.00570 * 11.34389 * 14 12 10 16 16 Si 1.86807 * 119.99931 * 191.33961 * 14 12 10 17 17 H 1.48500 * 109.46890 * 89.99857 * 16 14 12 18 18 H 1.48491 * 109.47192 * 210.00048 * 16 14 12 19 19 H 1.48501 * 109.47058 * 330.00144 * 16 14 12 20 20 H 1.09005 * 109.47022 * 89.99574 * 1 2 3 21 21 H 1.09001 * 109.47188 * 330.00392 * 1 2 3 22 22 H 1.09001 * 109.47450 * 210.00193 * 1 2 3 23 23 H 1.07995 * 119.99350 * 359.97438 * 3 2 1 24 24 H 1.07998 * 120.00413 * 180.02562 * 4 3 2 25 25 H 1.08000 * 120.00123 * 179.97438 * 7 5 4 26 26 H 1.09001 * 109.46867 * 200.00089 * 9 8 2 27 27 H 1.08993 * 109.47444 * 320.00218 * 9 8 2 28 28 H 1.09003 * 109.46744 * 94.40938 * 11 10 9 29 29 H 1.08995 * 109.47377 * 214.41301 * 11 10 9 30 30 H 1.09000 * 109.47035 * 334.42122 * 11 10 9 31 31 H 0.96993 * 120.00249 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5801 1.1979 0.0005 5 6 4.2720 -0.0001 0.0005 6 35 6.1630 -0.0001 0.0005 7 6 3.5802 -1.1977 0.0004 8 6 2.1978 -1.1971 0.0058 9 6 1.4439 -2.5020 0.0115 10 7 0.9926 -2.8111 -1.3476 11 6 -0.3151 -2.3397 -1.8102 12 6 1.7930 -3.5408 -2.1855 13 1 2.5459 -4.1981 -1.7764 14 6 1.6367 -3.4354 -3.5608 15 7 0.8844 -2.4811 -4.0665 16 14 2.4942 -4.6479 -4.6939 17 1 1.6073 -5.8149 -4.9323 18 1 2.7995 -3.9858 -5.9875 19 1 3.7575 -5.1071 -4.0626 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3634 -0.8900 0.5139 23 1 1.6579 2.1326 -0.0004 24 1 4.1199 2.1333 0.0010 25 1 4.1199 -2.1331 0.0000 26 1 2.0982 -3.2981 0.3669 27 1 0.5802 -2.4198 0.6712 28 1 -0.1947 -1.3920 -2.3352 29 1 -0.7489 -3.0768 -2.4857 30 1 -0.9744 -2.1991 -0.9537 31 1 0.7755 -2.4073 -5.0275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258741782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:32 Heat of formation + Delta-G solvation = 44.654703 kcal Electronic energy + Delta-G solvation = -14985.758473 eV Core-core repulsion = 12506.924264 eV Total energy + Delta-G solvation = -2478.834209 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.13430 -35.60350 -32.96572 -31.79140 -30.26856 -29.92961 -26.88700 -25.66319 -25.14723 -22.12695 -21.29411 -19.65918 -16.73551 -15.91888 -15.23023 -14.88924 -14.47708 -13.98244 -13.40047 -12.94836 -12.76702 -12.60692 -12.22952 -12.12170 -11.79433 -11.11915 -10.88340 -10.85095 -10.63114 -10.48701 -10.33014 -10.16381 -9.99375 -9.89554 -9.86929 -8.57867 -8.33043 -7.97222 -6.79658 -5.77004 -3.22127 1.62747 1.84907 2.02166 3.37051 3.43556 3.44710 4.10684 4.49635 5.18621 5.31978 5.40199 5.47473 5.62529 5.68828 5.80530 5.93246 6.09739 6.12035 6.30848 6.43997 6.49798 6.60461 6.67908 6.73804 6.84246 7.23056 7.32679 7.39391 7.69490 7.77929 8.35236 9.18860 9.80352 10.29273 11.27462 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.007092 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.538322 B = 3947.057210 C = 5088.525604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.059 4.059 3 C -0.122 4.122 4 C -0.108 4.108 5 C -0.094 4.094 6 Br -0.077 7.077 7 C -0.075 4.075 8 C -0.074 4.074 9 C 0.179 3.821 10 N -0.588 5.588 11 C 0.161 3.839 12 C -0.255 4.255 13 H 0.070 0.930 14 C 0.006 3.994 15 N -0.903 5.903 16 Si 0.904 3.096 17 H -0.287 1.287 18 H -0.291 1.291 19 H -0.278 1.278 20 H 0.083 0.917 21 H 0.054 0.946 22 H 0.070 0.930 23 H 0.120 0.880 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.001 0.999 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 6.778 9.909 12.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.129 4.129 5 C -0.173 4.173 6 Br 0.008 6.992 7 C -0.096 4.096 8 C -0.078 4.078 9 C 0.051 3.949 10 N -0.308 5.308 11 C 0.016 3.984 12 C -0.384 4.384 13 H 0.087 0.913 14 C -0.193 4.193 15 N -0.547 5.547 16 Si 0.734 3.266 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.204 1.204 20 H 0.101 0.899 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.138 0.862 24 H 0.139 0.861 25 H 0.143 0.857 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.147 6.765 9.700 12.898 hybrid contribution 0.266 -0.375 -0.998 1.099 sum 5.413 6.389 8.702 12.077 Atomic orbital electron populations 1.21050 0.91387 1.01723 1.03300 1.19827 0.96239 0.92494 0.97435 1.20883 0.93312 0.97607 1.02290 1.20810 0.94275 0.96069 1.01727 1.21624 0.88671 0.96593 1.10375 1.96581 1.05257 1.99355 1.97973 1.20917 0.94062 0.96131 0.98453 1.21083 0.93178 0.97739 0.95843 1.20018 0.95672 0.90433 0.88731 1.44089 1.15827 1.60779 1.10140 1.21003 0.83962 0.99330 0.94069 1.19228 1.15617 1.16403 0.87177 0.91259 1.25075 0.99475 0.97608 0.97186 1.70046 1.41870 1.31496 1.11300 0.86252 0.79369 0.80541 0.80407 1.21413 1.21692 1.20355 0.89870 0.92718 0.91158 0.86161 0.86148 0.85699 0.92782 0.92850 0.94908 0.93902 0.98043 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 8.14 36.00 0.29 -1.57 16 2 C -0.06 -1.05 5.88 -104.62 -0.62 -1.67 16 3 C -0.12 -1.98 9.70 -39.58 -0.38 -2.36 16 4 C -0.11 -1.76 9.79 -39.55 -0.39 -2.15 16 5 C -0.09 -1.64 6.22 -39.52 -0.25 -1.89 16 6 Br -0.08 -1.18 33.70 -68.01 -2.29 -3.47 16 7 C -0.07 -1.42 9.41 -39.56 -0.37 -1.80 16 8 C -0.07 -1.43 5.46 -104.63 -0.57 -2.01 16 9 C 0.18 3.58 5.37 -5.19 -0.03 3.55 16 10 N -0.59 -14.27 2.91 -182.50 -0.53 -14.80 16 11 C 0.16 3.77 7.24 59.85 0.43 4.20 16 12 C -0.25 -6.87 9.66 -15.06 -0.15 -7.01 16 13 H 0.07 1.84 7.85 -52.49 -0.41 1.42 16 14 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 15 N -0.90 -26.02 10.65 55.49 0.59 -25.43 16 16 Si 0.90 21.90 29.57 -169.99 -5.03 16.87 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H 0.08 1.45 6.13 -51.93 -0.32 1.14 16 21 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 22 H 0.07 1.07 5.20 -51.93 -0.27 0.80 16 23 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 24 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 25 H 0.13 2.34 8.04 -52.49 -0.42 1.92 16 26 H 0.05 1.05 7.90 -51.93 -0.41 0.64 16 27 H 0.05 0.95 6.13 -51.93 -0.32 0.63 16 28 H 0.03 0.83 6.14 -51.93 -0.32 0.52 16 29 H 0.04 1.10 7.28 -51.93 -0.38 0.72 16 30 H 0.00 0.02 6.49 -51.93 -0.34 -0.31 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 273.83 15.07 4.13 4.13 Total: -1.00 -28.97 273.83 -8.83 -37.80 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -3.59 Total: -2.47 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -2.11 Total: -12.63 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.06 Total: -40.23 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Atomic # 35 Polarization: -1.18 SS G_CDS: -2.29 Total: -3.47 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.97 -8.83 -37.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258741782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.452 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds