Wall clock time and date at job start Tue Mar 31 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38265 * 119.99265 * 2 1 4 4 C 1.38201 * 120.01010 * 179.97438 * 3 2 1 5 5 C 1.38347 * 119.98765 * 0.02776 * 4 3 2 6 6 Br 1.89107 * 120.00508 * 179.97438 * 5 4 3 7 7 C 1.38300 * 119.98171 * 359.97438 * 5 4 3 8 8 C 1.38221 * 119.99072 * 179.72436 * 2 1 3 9 9 C 1.50705 * 119.99054 * 0.02562 * 8 2 1 10 10 N 1.46503 * 109.46761 * 80.00518 * 9 8 2 11 11 C 1.46497 * 120.00047 * 269.99344 * 10 9 8 12 12 C 1.36937 * 119.99838 * 90.00119 * 10 9 8 13 13 H 1.07998 * 120.00347 * 23.50048 * 12 10 9 14 14 C 1.38812 * 119.99485 * 203.50554 * 12 10 9 15 15 N 1.31620 * 120.00570 * 11.34389 * 14 12 10 16 16 Si 1.86807 * 119.99931 * 191.33961 * 14 12 10 17 17 H 1.48500 * 109.46890 * 89.99857 * 16 14 12 18 18 H 1.48491 * 109.47192 * 210.00048 * 16 14 12 19 19 H 1.48501 * 109.47058 * 330.00144 * 16 14 12 20 20 H 1.09005 * 109.47022 * 89.99574 * 1 2 3 21 21 H 1.09001 * 109.47188 * 330.00392 * 1 2 3 22 22 H 1.09001 * 109.47450 * 210.00193 * 1 2 3 23 23 H 1.07995 * 119.99350 * 359.97438 * 3 2 1 24 24 H 1.07998 * 120.00413 * 180.02562 * 4 3 2 25 25 H 1.08000 * 120.00123 * 179.97438 * 7 5 4 26 26 H 1.09001 * 109.46867 * 200.00089 * 9 8 2 27 27 H 1.08993 * 109.47444 * 320.00218 * 9 8 2 28 28 H 1.09003 * 109.46744 * 94.40938 * 11 10 9 29 29 H 1.08995 * 109.47377 * 214.41301 * 11 10 9 30 30 H 1.09000 * 109.47035 * 334.42122 * 11 10 9 31 31 H 0.96993 * 120.00249 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5801 1.1979 0.0005 5 6 4.2720 -0.0001 0.0005 6 35 6.1630 -0.0001 0.0005 7 6 3.5802 -1.1977 0.0004 8 6 2.1978 -1.1971 0.0058 9 6 1.4439 -2.5020 0.0115 10 7 0.9926 -2.8111 -1.3476 11 6 -0.3151 -2.3397 -1.8102 12 6 1.7930 -3.5408 -2.1855 13 1 2.5459 -4.1981 -1.7764 14 6 1.6367 -3.4354 -3.5608 15 7 0.8844 -2.4811 -4.0665 16 14 2.4942 -4.6479 -4.6939 17 1 1.6073 -5.8149 -4.9323 18 1 2.7995 -3.9858 -5.9875 19 1 3.7575 -5.1071 -4.0626 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3634 -0.8900 0.5139 23 1 1.6579 2.1326 -0.0004 24 1 4.1199 2.1333 0.0010 25 1 4.1199 -2.1331 0.0000 26 1 2.0982 -3.2981 0.3669 27 1 0.5802 -2.4198 0.6712 28 1 -0.1947 -1.3920 -2.3352 29 1 -0.7489 -3.0768 -2.4857 30 1 -0.9744 -2.1991 -0.9537 31 1 0.7755 -2.4073 -5.0275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258741782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:31 Heat of formation + Delta-G solvation = 29.847593 kcal Electronic energy + Delta-G solvation = -14986.400557 eV Core-core repulsion = 12506.924264 eV Total energy + Delta-G solvation = -2479.476293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.51642 -37.37430 -34.44610 -33.43561 -31.89933 -31.28055 -28.46448 -27.56487 -26.56750 -23.80608 -22.77944 -21.15424 -18.69895 -17.33385 -16.76030 -16.61308 -15.91238 -15.63916 -15.20030 -14.61979 -14.14901 -14.00996 -13.69925 -13.51141 -13.33563 -12.88797 -12.76026 -12.47756 -12.25687 -12.16260 -11.98125 -11.79875 -11.63160 -11.42727 -11.21371 -10.62657 -9.72055 -9.32993 -8.75050 -7.82668 -5.29798 0.26663 0.48377 0.70624 1.45016 1.45560 1.53631 2.49227 2.75210 3.32745 3.88206 3.91210 4.03549 4.11729 4.30569 4.43038 4.59814 4.79164 4.84059 4.87581 4.92523 5.02344 5.13653 5.27749 5.35114 5.37664 5.48352 5.64701 5.79124 5.84116 6.05809 6.33625 7.16563 7.87043 8.29889 9.19744 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.007092 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.538322 B = 3947.057210 C = 5088.525604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.071 4.071 3 C -0.121 4.121 4 C -0.105 4.105 5 C -0.108 4.108 6 Br -0.059 7.059 7 C -0.092 4.092 8 C -0.096 4.096 9 C 0.179 3.821 10 N -0.604 5.604 11 C 0.178 3.822 12 C -0.257 4.257 13 H 0.068 0.932 14 C -0.048 4.048 15 N -0.933 5.933 16 Si 0.960 3.040 17 H -0.284 1.284 18 H -0.297 1.297 19 H -0.271 1.271 20 H 0.063 0.937 21 H 0.087 0.913 22 H 0.072 0.928 23 H 0.153 0.847 24 H 0.147 0.853 25 H 0.117 0.883 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.037 0.963 31 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.870 7.864 11.013 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.125 4.125 5 C -0.187 4.187 6 Br 0.026 6.974 7 C -0.113 4.113 8 C -0.100 4.100 9 C 0.054 3.946 10 N -0.325 5.325 11 C 0.033 3.967 12 C -0.388 4.388 13 H 0.086 0.914 14 C -0.243 4.243 15 N -0.579 5.579 16 Si 0.789 3.211 17 H -0.211 1.211 18 H -0.224 1.224 19 H -0.196 1.196 20 H 0.082 0.918 21 H 0.105 0.895 22 H 0.090 0.910 23 H 0.171 0.829 24 H 0.165 0.835 25 H 0.135 0.865 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.028 0.972 29 H 0.029 0.971 30 H 0.056 0.944 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.511 7.850 10.849 14.481 hybrid contribution 0.219 -0.647 -1.193 1.375 sum 5.731 7.203 9.656 13.341 Atomic orbital electron populations 1.21015 0.90010 1.03496 1.02458 1.20166 0.97469 0.92553 0.96991 1.21290 0.93529 0.98360 1.00801 1.21210 0.94647 0.96634 0.99963 1.21818 0.89942 0.96607 1.10320 1.96584 1.03500 1.99343 1.97927 1.20980 0.94284 0.96646 0.99406 1.20999 0.93488 0.97895 0.97600 1.20075 0.96746 0.91040 0.86785 1.44205 1.16027 1.61275 1.11014 1.20742 0.84347 0.96992 0.94584 1.19481 1.15077 1.16456 0.87774 0.91425 1.25722 1.00779 0.99313 0.98522 1.70200 1.43699 1.33142 1.10849 0.85368 0.78689 0.78695 0.78358 1.21097 1.22412 1.19587 0.91805 0.89454 0.90971 0.82908 0.83506 0.86492 0.92836 0.90482 0.97196 0.97089 0.94420 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.30 8.14 71.23 0.58 -2.72 16 2 C -0.07 -2.38 5.88 -19.86 -0.12 -2.50 16 3 C -0.12 -3.56 9.70 22.27 0.22 -3.35 16 4 C -0.10 -3.11 9.79 22.29 0.22 -2.89 16 5 C -0.11 -3.61 6.22 22.31 0.14 -3.47 16 6 Br -0.06 -1.70 33.70 -20.37 -0.69 -2.39 16 7 C -0.09 -3.46 9.41 22.28 0.21 -3.25 16 8 C -0.10 -3.64 5.46 -19.87 -0.11 -3.75 16 9 C 0.18 7.05 5.37 85.63 0.46 7.51 16 10 N -0.60 -29.30 2.91 -731.31 -2.12 -31.42 16 11 C 0.18 8.38 7.24 127.77 0.92 9.30 16 12 C -0.26 -13.99 9.66 84.03 0.81 -13.18 16 13 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 14 C -0.05 -2.68 5.13 84.86 0.44 -2.25 16 15 N -0.93 -54.87 10.65 21.65 0.23 -54.64 16 16 Si 0.96 45.56 29.57 68.60 2.03 47.59 16 17 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H 0.06 2.14 6.13 -2.38 -0.01 2.13 16 21 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 22 H 0.07 2.03 5.20 -2.39 -0.01 2.02 16 23 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 24 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 25 H 0.12 4.42 8.04 -2.91 -0.02 4.40 16 26 H 0.05 2.07 7.90 -2.39 -0.02 2.05 16 27 H 0.08 2.61 6.13 -2.39 -0.01 2.60 16 28 H 0.01 0.51 6.14 -2.39 -0.01 0.49 16 29 H 0.01 0.55 7.28 -2.39 -0.02 0.53 16 30 H 0.04 1.46 6.49 -2.39 -0.02 1.44 16 31 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -61.99 273.83 4.35 -57.64 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 1.13 Total: 3.76 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 3.77 Total: -20.54 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -1.89 Total: -86.06 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 35 Polarization: -1.70 SS G_CDS: -0.69 Total: -2.39 kcal Total: -61.99 4.35 -57.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258741782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.492 kcal (2) G-P(sol) polarization free energy of solvation -61.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds