Wall clock time and date at job start Tue Mar 31 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99822 * 2 1 4 4 C 1.53006 * 109.46998 * 270.00192 * 3 2 1 5 5 C 1.50699 * 109.46866 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99963 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00270 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99835 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00496 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47092 * 90.00048 * 9 7 5 11 11 H 1.48498 * 109.47340 * 210.00299 * 9 7 5 12 12 H 1.48501 * 109.47391 * 330.00372 * 9 7 5 13 13 C 1.39723 * 120.00005 * 180.02562 * 2 1 3 14 14 C 1.38899 * 120.06037 * 179.72307 * 13 2 1 15 15 C 1.38109 * 119.93177 * 179.74261 * 14 13 2 16 16 C 1.38363 * 120.06597 * 0.50778 * 15 14 13 17 17 Br 1.89095 * 119.93865 * 179.74396 * 16 15 14 18 18 C 1.38361 * 120.12485 * 359.77151 * 16 15 14 19 19 C 1.38103 * 120.06945 * 359.97174 * 18 16 15 20 20 H 1.09007 * 109.47177 * 89.99828 * 1 2 3 21 21 H 1.09002 * 109.47019 * 209.99587 * 1 2 3 22 22 H 1.09001 * 109.47429 * 329.99755 * 1 2 3 23 23 H 1.08993 * 109.47452 * 150.00270 * 3 2 1 24 24 H 1.09000 * 109.47175 * 30.00060 * 3 2 1 25 25 H 1.09000 * 109.47050 * 299.99945 * 4 3 2 26 26 H 1.09001 * 109.46801 * 60.00058 * 4 3 2 27 27 H 0.96992 * 120.00038 * 180.02562 * 8 7 5 28 28 H 1.07998 * 120.03512 * 359.97438 * 14 13 2 29 29 H 1.08002 * 119.97178 * 180.25682 * 15 14 13 30 30 H 1.07999 * 119.96488 * 179.97438 * 18 16 15 31 31 H 1.07997 * 120.03799 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2053 3.0159 -1.4425 6 1 3.4747 3.4839 -0.5072 7 6 3.5504 3.6128 -2.6365 8 7 3.2220 3.0431 -3.7756 9 14 4.4830 5.2312 -2.6365 10 1 5.9432 4.9611 -2.6355 11 1 4.1244 6.0092 -3.8495 12 1 4.1229 6.0102 -1.4246 13 6 2.1636 -1.2100 -0.0005 14 6 3.5526 -1.2115 -0.0064 15 6 4.2405 -2.4091 -0.0015 16 6 3.5474 -3.6066 -0.0015 17 35 4.4929 -5.2442 -0.0021 18 6 2.1638 -3.6081 -0.0015 19 6 1.4705 -2.4137 -0.0010 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 3.1499 1.1385 0.5137 24 1 1.6084 2.0284 0.5138 25 1 3.0415 0.9508 -1.9564 26 1 1.5000 1.8407 -1.9563 27 1 3.4650 3.4628 -4.6155 28 1 4.0942 -0.2771 -0.0109 29 1 5.3205 -2.4110 -0.0018 30 1 1.6254 -4.5444 -0.0019 31 1 0.3905 -2.4155 -0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258919498.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:27 Heat of formation + Delta-G solvation = 10.101691 kcal Electronic energy + Delta-G solvation = -14321.796618 eV Core-core repulsion = 11841.464079 eV Total energy + Delta-G solvation = -2480.332540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.59200 -37.59637 -35.21817 -32.81914 -32.33347 -31.37321 -29.56814 -27.76778 -25.63024 -23.70256 -22.93286 -21.28415 -18.76354 -18.34594 -16.72506 -16.59369 -16.22146 -15.57250 -15.42924 -14.84831 -14.68034 -14.22004 -14.07587 -13.87148 -13.35378 -12.92021 -12.84083 -12.60782 -12.42577 -12.11707 -12.03229 -11.71016 -11.64084 -11.30860 -11.09049 -10.58485 -10.32214 -9.93949 -8.26954 -8.11518 -6.34437 0.44091 0.45505 0.85312 1.40812 1.41636 1.52603 2.24371 2.43870 2.82033 3.12219 3.85335 3.99548 4.18638 4.39452 4.42565 4.51216 4.62058 4.65407 4.77252 4.90332 4.96028 5.04958 5.20319 5.28538 5.40613 5.46614 5.56333 5.75452 5.81773 6.10825 6.41026 6.58819 6.83971 7.35957 8.89890 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.026063 B = 0.004033 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.054016 B = 6940.527808 C = 7698.298996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.629 5.629 3 C 0.137 3.863 4 C 0.021 3.979 5 C -0.542 4.542 6 H 0.067 0.933 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.965 3.035 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.259 1.259 13 C 0.224 3.776 14 C -0.210 4.210 15 C -0.047 4.047 16 C -0.168 4.168 17 Br -0.060 7.060 18 C -0.041 4.041 19 C -0.202 4.202 20 H 0.039 0.961 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.077 0.923 25 H -0.014 1.014 26 H -0.012 1.012 27 H 0.263 0.737 28 H 0.119 0.881 29 H 0.135 0.865 30 H 0.151 0.849 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 -15.336 10.073 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.336 5.336 3 C 0.014 3.986 4 C -0.018 4.018 5 C -0.580 4.580 6 H 0.085 0.915 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.789 3.211 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.183 1.183 13 C 0.119 3.881 14 C -0.233 4.233 15 C -0.067 4.067 16 C -0.249 4.249 17 Br 0.024 6.976 18 C -0.061 4.061 19 C -0.225 4.225 20 H 0.057 0.943 21 H 0.110 0.890 22 H 0.096 0.904 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.004 0.996 26 H 0.006 0.994 27 H 0.072 0.928 28 H 0.137 0.863 29 H 0.153 0.847 30 H 0.169 0.831 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.803 -15.713 9.911 18.665 hybrid contribution 0.364 1.368 -0.654 1.560 sum -1.439 -14.344 9.257 17.133 Atomic orbital electron populations 1.21808 0.78301 1.03965 1.01288 1.46957 1.06152 1.03077 1.77462 1.21517 0.96177 0.83506 0.97384 1.19280 0.94782 0.94809 0.92902 1.21580 1.36356 1.07141 0.92959 0.91473 1.25962 0.96867 1.01559 0.95172 1.70119 1.47956 1.41190 0.98074 0.85447 0.78716 0.78911 0.77980 1.19930 1.21018 1.18300 1.18276 0.91558 0.86777 0.91534 1.20853 0.93064 0.98632 1.10799 1.20922 1.00184 0.90312 0.95287 1.21488 0.95039 0.91089 1.17257 1.96577 1.75700 1.27069 1.98229 1.21034 0.91693 0.98697 0.94685 1.20876 1.00839 0.89870 1.10943 0.94269 0.88999 0.90365 0.91387 0.90506 0.99609 0.99355 0.92840 0.86339 0.84667 0.83092 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.33 10.23 127.77 1.31 3.63 16 2 N -0.63 -21.41 3.01 -722.14 -2.17 -23.58 16 3 C 0.14 5.39 5.14 86.38 0.44 5.84 16 4 C 0.02 1.06 5.30 29.85 0.16 1.22 16 5 C -0.54 -29.83 9.11 25.60 0.23 -29.59 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.00 0.14 5.46 84.65 0.46 0.60 16 8 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 9 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 13 C 0.22 7.43 6.55 38.20 0.25 7.68 16 14 C -0.21 -7.27 9.20 22.40 0.21 -7.06 16 15 C -0.05 -1.42 9.78 22.27 0.22 -1.20 16 16 C -0.17 -4.62 6.22 22.33 0.14 -4.48 16 17 Br -0.06 -1.42 33.70 -20.37 -0.69 -2.11 16 18 C -0.04 -1.03 9.78 22.27 0.22 -0.81 16 19 C -0.20 -5.48 9.21 22.40 0.21 -5.28 16 20 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 21 H 0.09 1.83 6.20 -2.39 -0.01 1.82 16 22 H 0.08 1.85 7.89 -2.39 -0.02 1.83 16 23 H 0.07 2.63 6.21 -2.39 -0.01 2.62 16 24 H 0.08 2.81 7.89 -2.39 -0.02 2.79 16 25 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 26 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.12 4.45 6.15 -2.91 -0.02 4.43 16 29 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 31 H 0.15 3.26 6.14 -2.91 -0.02 3.24 16 Total: -1.00 -63.41 283.90 4.41 -59.00 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.12 Total: 7.11 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 3.84 Total: -29.45 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -1.89 Total: -79.99 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 35 Polarization: -1.42 SS G_CDS: -0.69 Total: -2.11 kcal Total: -63.41 4.41 -59.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258919498.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.100 kcal (2) G-P(sol) polarization free energy of solvation -63.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds