Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38265 * 119.98861 * 2 1 4 4 C 1.38197 * 120.00908 * 179.97438 * 3 2 1 5 5 C 1.38349 * 119.98912 * 0.02562 * 4 3 2 6 6 Br 1.89099 * 120.00920 * 179.97438 * 5 4 3 7 7 C 1.38298 * 119.98025 * 0.02562 * 5 4 3 8 8 C 1.38218 * 119.99173 * 179.72112 * 2 1 3 9 9 C 1.50701 * 119.99270 * 0.02562 * 8 2 1 10 10 N 1.46906 * 109.46983 * 79.99937 * 9 8 2 11 11 C 1.46906 * 110.99668 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46592 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00205 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99804 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00102 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99857 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.47000 * 90.00112 * 16 14 12 18 18 H 1.48496 * 109.47168 * 209.99998 * 16 14 12 19 19 H 1.48504 * 109.47282 * 330.00058 * 16 14 12 20 20 H 1.09002 * 109.47152 * 90.00079 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00180 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00161 * 1 2 3 23 23 H 1.07996 * 119.99509 * 359.97326 * 3 2 1 24 24 H 1.08004 * 120.00308 * 180.02562 * 4 3 2 25 25 H 1.08004 * 120.00723 * 179.97438 * 7 5 4 26 26 H 1.09001 * 109.47540 * 199.99729 * 9 8 2 27 27 H 1.09000 * 109.47120 * 320.00296 * 9 8 2 28 28 H 1.00893 * 110.99912 * 56.04568 * 10 9 8 29 29 H 1.09001 * 109.46933 * 299.99585 * 11 10 9 30 30 H 1.08994 * 109.47396 * 60.00062 * 11 10 9 31 31 H 0.97002 * 120.00126 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5801 1.1980 0.0005 5 6 4.2720 0.0000 0.0005 6 35 6.1630 0.0000 0.0005 7 6 3.5803 -1.1976 -0.0005 8 6 2.1979 -1.1971 0.0058 9 6 1.4441 -2.5020 0.0116 10 7 0.9914 -2.8120 -1.3512 11 6 0.2504 -4.0800 -1.3840 12 6 -0.1974 -4.3637 -2.7947 13 1 0.0447 -3.6714 -3.5876 14 6 -0.9152 -5.5075 -3.0734 15 7 -1.3055 -5.7553 -4.3045 16 14 -1.3320 -6.7057 -1.7023 17 1 -2.6364 -6.3326 -1.0984 18 1 -1.4182 -8.0809 -2.2560 19 1 -0.2728 -6.6562 -0.6626 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.6579 2.1327 -0.0004 24 1 4.1198 2.1335 0.0010 25 1 4.1201 -2.1331 -0.0010 26 1 2.0983 -3.2981 0.3670 27 1 0.5804 -2.4197 0.6714 28 1 1.7681 -2.8299 -1.9949 29 1 0.8961 -4.8872 -1.0381 30 1 -0.6215 -4.0083 -0.7340 31 1 -1.8108 -6.5597 -4.5004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258919512.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = 18.314345 kcal Electronic energy + Delta-G solvation = -14178.428280 eV Core-core repulsion = 11698.451867 eV Total energy + Delta-G solvation = -2479.976412 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.63139 -35.64018 -33.36577 -32.54239 -31.16744 -30.39505 -27.75861 -26.20946 -24.45842 -22.03771 -21.17334 -20.39166 -16.92585 -16.27223 -15.94957 -15.09722 -14.54708 -14.31123 -13.92710 -13.29295 -13.26092 -13.02817 -12.50316 -12.47459 -12.26401 -11.88090 -11.64180 -11.10038 -10.96972 -10.66123 -10.62190 -10.48319 -10.27720 -9.90148 -9.33955 -8.88907 -8.62086 -8.43571 -7.54959 -6.08670 -4.07110 1.12601 1.29300 1.59614 3.26235 3.33830 3.35341 3.59309 4.38976 4.70285 4.82635 4.96551 5.12603 5.23854 5.24976 5.34357 5.57630 5.69907 5.77126 5.83698 5.95703 6.09604 6.17412 6.28924 6.33704 6.66697 6.75332 6.87008 6.96426 7.54240 7.81651 8.24079 8.60332 8.99465 9.52753 11.04574 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.003982 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.793679 B = 7030.765731 C = 7609.683797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 C -0.121 4.121 4 C -0.093 4.093 5 C -0.098 4.098 6 Br -0.064 7.064 7 C -0.082 4.082 8 C -0.070 4.070 9 C 0.091 3.909 10 N -0.672 5.672 11 C 0.164 3.836 12 C -0.517 4.517 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.877 3.123 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.268 1.268 20 H 0.085 0.915 21 H 0.058 0.942 22 H 0.074 0.926 23 H 0.129 0.871 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.029 0.971 27 H 0.080 0.920 28 H 0.338 0.662 29 H -0.015 1.015 30 H 0.023 0.977 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.414 14.150 12.032 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.042 4.042 3 C -0.140 4.140 4 C -0.113 4.113 5 C -0.178 4.178 6 Br 0.021 6.979 7 C -0.103 4.103 8 C -0.071 4.071 9 C -0.038 4.038 10 N -0.302 5.302 11 C 0.036 3.964 12 C -0.555 4.555 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.538 5.538 16 Si 0.705 3.295 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.193 1.193 20 H 0.104 0.896 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.147 0.853 24 H 0.146 0.854 25 H 0.147 0.853 26 H 0.047 0.953 27 H 0.098 0.902 28 H 0.155 0.845 29 H 0.002 0.998 30 H 0.041 0.959 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.442 14.376 11.968 22.465 hybrid contribution 0.110 -1.368 0.676 1.530 sum 12.551 13.008 12.644 22.059 Atomic orbital electron populations 1.20854 0.90261 1.02257 1.03718 1.19963 0.96903 0.92056 0.95300 1.21029 0.93310 0.97968 1.01676 1.21002 0.94367 0.96429 0.99511 1.21629 0.89581 0.96313 1.10231 1.96666 1.03966 1.99333 1.97886 1.21025 0.93830 0.96729 0.98681 1.19860 0.92421 0.95672 0.99168 1.20937 0.97440 0.91389 0.94053 1.60531 1.28599 1.37243 1.03871 1.20025 0.92884 0.84957 0.98489 1.21035 1.34736 1.07044 0.92673 0.90267 1.24899 0.95404 0.97587 0.95368 1.69894 1.38308 1.26884 1.18730 0.86831 0.79267 0.80750 0.82698 1.20113 1.21190 1.19280 0.89632 0.92291 0.90765 0.85324 0.85440 0.85314 0.95258 0.90231 0.84511 0.99753 0.95908 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.61 36.01 0.35 -1.10 16 2 C -0.04 -0.55 5.88 -104.62 -0.62 -1.17 16 3 C -0.12 -1.41 9.70 -39.59 -0.38 -1.79 16 4 C -0.09 -1.08 9.79 -39.56 -0.39 -1.46 16 5 C -0.10 -1.25 6.22 -39.52 -0.25 -1.49 16 6 Br -0.06 -0.73 33.70 -68.01 -2.29 -3.02 16 7 C -0.08 -1.12 9.41 -39.56 -0.37 -1.50 16 8 C -0.07 -1.01 5.39 -104.63 -0.56 -1.57 16 9 C 0.09 1.47 5.20 -4.97 -0.03 1.45 16 10 N -0.67 -13.40 6.48 -116.33 -0.75 -14.15 16 11 C 0.16 3.88 4.51 -4.97 -0.02 3.85 16 12 C -0.52 -14.58 9.87 -34.44 -0.34 -14.92 16 13 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 16 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.26 6.54 56.52 0.37 -5.90 16 20 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 21 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 22 H 0.07 0.98 6.11 -51.93 -0.32 0.66 16 23 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 24 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 25 H 0.13 1.67 8.04 -52.48 -0.42 1.25 16 26 H 0.03 0.46 8.01 -51.93 -0.42 0.05 16 27 H 0.08 1.24 6.41 -51.93 -0.33 0.91 16 28 H 0.34 6.75 8.72 -39.30 -0.34 6.41 16 29 H -0.02 -0.36 7.20 -51.93 -0.37 -0.74 16 30 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 284.17 15.07 4.28 4.28 Total: -1.00 -29.68 284.17 -9.24 -38.92 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.87 Total: 1.83 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.71 Total: -17.80 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.02 Total: -40.84 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.29 Total: -3.02 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.68 -9.24 -38.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258919512.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.233 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds