Wall clock time and date at job start Tue Mar 31 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.52996 * 109.47022 * 293.95609 * 3 2 1 5 5 C 1.50708 * 109.46924 * 180.02562 * 4 3 2 6 6 H 1.07994 * 119.99744 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99843 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99853 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00240 * 359.97438 * 7 5 4 10 10 H 1.48490 * 109.47053 * 89.99828 * 9 7 5 11 11 H 1.48500 * 109.46929 * 210.00519 * 9 7 5 12 12 H 1.48500 * 109.46590 * 330.00040 * 9 7 5 13 13 C 1.39723 * 111.00143 * 123.95295 * 2 1 3 14 14 C 1.38885 * 120.07952 * 296.04661 * 13 2 1 15 15 C 1.38116 * 119.93661 * 180.02562 * 14 13 2 16 16 C 1.38291 * 120.08789 * 359.97438 * 15 14 13 17 17 C 1.38275 * 120.15772 * 0.02562 * 16 15 14 18 18 C 1.38197 * 120.06105 * 359.72296 * 17 16 15 19 19 Br 1.89102 * 120.04539 * 180.28059 * 18 17 16 20 20 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 21 21 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 22 22 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 24 24 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 25 25 H 1.08997 * 109.47190 * 299.99825 * 4 3 2 26 26 H 1.09001 * 109.47349 * 60.00258 * 4 3 2 27 27 H 0.96998 * 120.00061 * 180.02562 * 8 7 5 28 28 H 1.07998 * 120.03482 * 359.97438 * 14 13 2 29 29 H 1.08000 * 119.95320 * 179.97438 * 15 14 13 30 30 H 1.08000 * 119.92494 * 179.97438 * 16 15 14 31 31 H 1.07995 * 119.96994 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1719 3.4643 -1.3184 6 1 2.7206 3.8320 -0.4640 7 6 1.9660 4.2817 -2.4095 8 7 2.4382 5.5092 -2.4099 9 14 1.0175 3.6454 -3.8877 10 1 -0.4280 3.9351 -3.7104 11 1 1.5097 4.3161 -5.1177 12 1 1.2171 2.1789 -4.0098 13 6 1.9698 -0.7285 1.0820 14 6 1.7266 -0.3015 2.3810 15 6 2.2234 -1.0236 3.4484 16 6 2.9621 -2.1712 3.2252 17 6 3.2064 -2.5998 1.9335 18 6 2.7079 -1.8850 0.8609 19 35 3.0357 -2.4760 -0.9052 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.5611 1.9274 0.8309 24 1 3.0797 1.3445 0.1082 25 1 2.0657 1.5016 -2.1491 26 1 0.5471 2.0845 -1.4264 27 1 2.2930 6.0844 -3.1773 28 1 1.1502 0.5949 2.5564 29 1 2.0348 -0.6915 4.4586 30 1 3.3497 -2.7336 4.0618 31 1 3.7840 -3.4963 1.7627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258920955.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:30 Heat of formation + Delta-G solvation = 33.272265 kcal Electronic energy + Delta-G solvation = -14529.425824 eV Core-core repulsion = 12050.098036 eV Total energy + Delta-G solvation = -2479.327788 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.80049 -36.67273 -33.05843 -32.17063 -30.77695 -29.51768 -28.66153 -26.14811 -24.16718 -22.43181 -21.25302 -19.83996 -17.32609 -16.60522 -15.65110 -15.45089 -14.58013 -14.33375 -13.99070 -13.78833 -13.37270 -12.86208 -12.57089 -12.48409 -11.81300 -11.50373 -11.34819 -11.30469 -10.94865 -10.68974 -10.02453 -9.97983 -9.86378 -9.78616 -9.22839 -8.85310 -8.52459 -8.48925 -8.09832 -6.04101 -4.02476 1.12519 1.22918 1.91435 3.32451 3.40482 3.47119 3.58342 4.13209 4.46962 4.80874 4.92384 5.13094 5.30437 5.31020 5.44392 5.65055 5.70445 5.76398 6.02897 6.08873 6.15855 6.25181 6.34651 6.39886 6.69087 6.71378 7.08949 7.24358 7.54563 7.67271 7.81758 8.52385 8.99526 9.58213 11.09201 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.005964 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.709662 B = 4693.543112 C = 5430.099279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.510 5.510 3 C 0.078 3.922 4 C -0.006 4.006 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.069 3.931 8 N -0.904 5.904 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.261 1.261 13 C 0.130 3.870 14 C -0.145 4.145 15 C -0.099 4.099 16 C -0.127 4.127 17 C -0.091 4.091 18 C -0.073 4.073 19 Br -0.038 7.038 20 H 0.082 0.918 21 H 0.027 0.973 22 H 0.060 0.940 23 H 0.032 0.968 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.013 0.987 27 H 0.263 0.737 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -18.790 9.191 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.232 5.232 3 C -0.047 4.047 4 C -0.044 4.044 5 C -0.560 4.560 6 H 0.089 0.911 7 C -0.132 4.132 8 N -0.542 5.542 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.186 1.186 13 C 0.034 3.966 14 C -0.166 4.166 15 C -0.118 4.118 16 C -0.146 4.146 17 C -0.112 4.112 18 C -0.153 4.153 19 Br 0.048 6.952 20 H 0.100 0.900 21 H 0.046 0.954 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.087 0.913 25 H 0.046 0.954 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.572 -19.054 7.946 20.653 hybrid contribution -0.792 0.454 0.354 0.979 sum -1.364 -18.600 8.300 20.413 Atomic orbital electron populations 1.22408 0.86008 1.01322 1.01724 1.59874 1.08321 1.16584 1.38392 1.22233 0.99293 0.83230 0.99943 1.19572 0.96289 0.95715 0.92779 1.21046 1.35660 0.95401 1.03879 0.91145 1.24972 0.95314 0.94630 0.98303 1.69912 1.46238 1.07152 1.30941 0.86794 0.80265 0.79983 0.82456 1.20360 1.21395 1.18586 1.18785 0.95158 0.92786 0.89910 1.21773 1.01387 1.00762 0.92643 1.21141 0.96898 0.94844 0.98910 1.21096 0.99906 0.97314 0.96321 1.21053 0.99110 0.99493 0.91508 1.21927 1.03588 0.97981 0.91852 1.96676 1.94683 1.87854 1.16021 0.89954 0.95425 0.92106 0.95008 0.91335 0.95400 0.96895 0.92718 0.85362 0.85716 0.85470 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.05 60.07 0.54 1.04 16 2 N -0.51 -8.98 3.99 -178.92 -0.71 -9.70 16 3 C 0.08 1.59 4.48 -3.82 -0.02 1.57 16 4 C -0.01 -0.14 3.97 -27.88 -0.11 -0.25 16 5 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 6 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 7 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 9 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.13 2.04 4.66 -83.75 -0.39 1.64 16 14 C -0.14 -1.98 8.70 -39.39 -0.34 -2.32 16 15 C -0.10 -1.10 10.04 -39.61 -0.40 -1.50 16 16 C -0.13 -1.33 10.04 -39.55 -0.40 -1.73 16 17 C -0.09 -1.08 9.78 -39.58 -0.39 -1.47 16 18 C -0.07 -1.06 6.24 -39.33 -0.25 -1.31 16 19 Br -0.04 -0.56 33.08 -68.01 -2.25 -2.81 16 20 H 0.08 1.35 6.47 -51.93 -0.34 1.02 16 21 H 0.03 0.40 7.48 -51.93 -0.39 0.01 16 22 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 23 H 0.03 0.64 7.48 -51.93 -0.39 0.25 16 24 H 0.07 1.47 8.06 -51.93 -0.42 1.05 16 25 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 26 H 0.01 0.30 5.98 -51.93 -0.31 -0.01 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.13 1.71 7.16 -52.49 -0.38 1.34 16 29 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 279.78 15.07 4.22 4.22 Total: -1.00 -30.83 279.78 -8.69 -39.52 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -3.87 Total: -3.62 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -2.18 Total: -17.63 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.06 Total: -36.92 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.25 Total: -2.81 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.83 -8.69 -39.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258920955.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.792 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds