Wall clock time and date at job start Tue Mar 31 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.52996 * 109.47022 * 293.95609 * 3 2 1 5 5 C 1.50708 * 109.46924 * 180.02562 * 4 3 2 6 6 H 1.07994 * 119.99744 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99843 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99853 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00240 * 359.97438 * 7 5 4 10 10 H 1.48490 * 109.47053 * 89.99828 * 9 7 5 11 11 H 1.48500 * 109.46929 * 210.00519 * 9 7 5 12 12 H 1.48500 * 109.46590 * 330.00040 * 9 7 5 13 13 C 1.39723 * 111.00143 * 123.95295 * 2 1 3 14 14 C 1.38885 * 120.07952 * 296.04661 * 13 2 1 15 15 C 1.38116 * 119.93661 * 180.02562 * 14 13 2 16 16 C 1.38291 * 120.08789 * 359.97438 * 15 14 13 17 17 C 1.38275 * 120.15772 * 0.02562 * 16 15 14 18 18 C 1.38197 * 120.06105 * 359.72296 * 17 16 15 19 19 Br 1.89102 * 120.04539 * 180.28059 * 18 17 16 20 20 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 21 21 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 22 22 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 24 24 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 25 25 H 1.08997 * 109.47190 * 299.99825 * 4 3 2 26 26 H 1.09001 * 109.47349 * 60.00258 * 4 3 2 27 27 H 0.96998 * 120.00061 * 180.02562 * 8 7 5 28 28 H 1.07998 * 120.03482 * 359.97438 * 14 13 2 29 29 H 1.08000 * 119.95320 * 179.97438 * 15 14 13 30 30 H 1.08000 * 119.92494 * 179.97438 * 16 15 14 31 31 H 1.07995 * 119.96994 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1719 3.4643 -1.3184 6 1 2.7206 3.8320 -0.4640 7 6 1.9660 4.2817 -2.4095 8 7 2.4382 5.5092 -2.4099 9 14 1.0175 3.6454 -3.8877 10 1 -0.4280 3.9351 -3.7104 11 1 1.5097 4.3161 -5.1177 12 1 1.2171 2.1789 -4.0098 13 6 1.9698 -0.7285 1.0820 14 6 1.7266 -0.3015 2.3810 15 6 2.2234 -1.0236 3.4484 16 6 2.9621 -2.1712 3.2252 17 6 3.2064 -2.5998 1.9335 18 6 2.7079 -1.8850 0.8609 19 35 3.0357 -2.4760 -0.9052 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.5611 1.9274 0.8309 24 1 3.0797 1.3445 0.1082 25 1 2.0657 1.5016 -2.1491 26 1 0.5471 2.0845 -1.4264 27 1 2.2930 6.0844 -3.1773 28 1 1.1502 0.5949 2.5564 29 1 2.0348 -0.6915 4.4586 30 1 3.3497 -2.7336 4.0618 31 1 3.7840 -3.4963 1.7627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258920955.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:30 Heat of formation + Delta-G solvation = 15.089105 kcal Electronic energy + Delta-G solvation = -14530.214305 eV Core-core repulsion = 12050.098036 eV Total energy + Delta-G solvation = -2480.116269 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.89501 -37.92855 -35.13518 -33.20893 -32.50779 -30.69546 -29.78662 -27.71497 -25.71552 -23.56982 -22.53602 -21.42137 -19.13730 -18.00248 -16.78250 -16.62901 -16.13850 -16.01294 -15.38008 -15.08304 -14.63354 -14.41105 -14.04532 -13.75144 -13.40332 -13.00425 -12.73968 -12.59926 -12.28276 -11.91916 -11.82270 -11.71391 -11.68310 -11.42397 -10.96288 -10.76052 -9.84277 -9.53660 -9.43741 -8.30580 -6.34741 0.14595 0.26204 0.85684 1.34972 1.38290 1.51333 2.36024 2.63004 2.86096 3.05261 3.88091 4.07642 4.14353 4.27928 4.37432 4.38757 4.52755 4.58430 4.67051 4.82300 4.87443 4.98267 5.21182 5.27963 5.34776 5.41828 5.44572 5.61658 5.79216 5.95788 6.25946 6.38979 6.72326 7.29981 8.86090 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.005964 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.709662 B = 4693.543112 C = 5430.099279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.516 5.516 3 C 0.095 3.905 4 C 0.003 3.997 5 C -0.532 4.532 6 H 0.032 0.968 7 C 0.010 3.990 8 N -0.949 5.949 9 Si 0.947 3.053 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.250 1.250 13 C 0.099 3.901 14 C -0.156 4.156 15 C -0.094 4.094 16 C -0.114 4.114 17 C -0.092 4.092 18 C -0.089 4.089 19 Br -0.052 7.052 20 H 0.071 0.929 21 H 0.036 0.964 22 H 0.077 0.923 23 H 0.030 0.970 24 H 0.050 0.950 25 H 0.019 0.981 26 H 0.024 0.976 27 H 0.267 0.733 28 H 0.125 0.875 29 H 0.155 0.845 30 H 0.166 0.834 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.555 -20.949 10.140 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.237 5.237 3 C -0.031 4.031 4 C -0.035 4.035 5 C -0.570 4.570 6 H 0.051 0.949 7 C -0.187 4.187 8 N -0.590 5.590 9 Si 0.771 3.229 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.174 1.174 13 C 0.003 3.997 14 C -0.177 4.177 15 C -0.113 4.113 16 C -0.133 4.133 17 C -0.112 4.112 18 C -0.170 4.170 19 Br 0.034 6.966 20 H 0.090 0.910 21 H 0.054 0.946 22 H 0.096 0.904 23 H 0.048 0.952 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.143 0.857 29 H 0.173 0.827 30 H 0.184 0.816 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.279 -21.235 8.916 23.067 hybrid contribution -0.506 1.103 0.221 1.233 sum -1.785 -20.133 9.137 22.181 Atomic orbital electron populations 1.22432 0.85028 1.02370 1.01563 1.59692 1.09336 1.14432 1.40226 1.21817 0.98282 0.85195 0.97782 1.19415 0.96409 0.93180 0.94499 1.21363 1.35197 0.97738 1.02748 0.94947 1.25918 0.96410 0.94696 1.01685 1.70057 1.48003 1.08715 1.32233 0.85694 0.79237 0.79839 0.78159 1.18773 1.20933 1.17355 1.18860 0.97145 0.93688 0.90022 1.21838 1.02016 1.01190 0.92675 1.21513 0.95736 0.94476 0.99550 1.21560 0.98190 0.96720 0.96798 1.21391 0.98587 0.99805 0.91386 1.22080 1.04412 0.98461 0.92048 1.96648 1.94762 1.87828 1.17361 0.91023 0.94554 0.90442 0.95216 0.93090 0.96233 0.95806 0.92418 0.85741 0.82733 0.81643 0.82996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.05 127.69 1.16 2.13 16 2 N -0.52 -17.92 3.99 -719.98 -2.88 -20.79 16 3 C 0.10 3.95 4.48 86.30 0.39 4.33 16 4 C 0.00 0.13 3.97 29.85 0.12 0.25 16 5 C -0.53 -31.27 9.66 25.60 0.25 -31.02 16 6 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 7 C 0.01 0.59 5.47 84.65 0.46 1.06 16 8 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 9 Si 0.95 45.20 27.47 68.60 1.88 47.08 16 10 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 13 C 0.10 2.99 4.66 38.21 0.18 3.17 16 14 C -0.16 -4.03 8.70 22.40 0.19 -3.84 16 15 C -0.09 -1.78 10.04 22.25 0.22 -1.56 16 16 C -0.11 -1.91 10.04 22.29 0.22 -1.69 16 17 C -0.09 -1.90 9.78 22.27 0.22 -1.68 16 18 C -0.09 -2.48 6.24 22.44 0.14 -2.34 16 19 Br -0.05 -1.49 33.08 -20.37 -0.67 -2.16 16 20 H 0.07 2.28 6.47 -2.39 -0.02 2.26 16 21 H 0.04 1.01 7.48 -2.39 -0.02 1.00 16 22 H 0.08 2.05 8.13 -2.38 -0.02 2.04 16 23 H 0.03 1.22 7.48 -2.39 -0.02 1.20 16 24 H 0.05 2.25 8.06 -2.39 -0.02 2.23 16 25 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 26 H 0.02 1.10 5.98 -2.39 -0.01 1.09 16 27 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 28 H 0.12 3.21 7.16 -2.91 -0.02 3.19 16 29 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -67.73 279.78 3.24 -64.49 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.06 Total: 2.49 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 3.55 Total: -31.19 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -2.58 Total: -80.71 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Atomic # 35 Polarization: -1.49 SS G_CDS: -0.67 Total: -2.16 kcal Total: -67.73 3.24 -64.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258920955.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.575 kcal (2) G-P(sol) polarization free energy of solvation -67.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds