Wall clock time and date at job start Tue Mar 31 2020 05:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99765 * 2 1 4 4 H 1.48498 * 109.47343 * 269.99855 * 3 2 1 5 5 H 1.48506 * 109.47291 * 30.00008 * 3 2 1 6 6 H 1.48501 * 109.47150 * 149.99664 * 3 2 1 7 7 C 1.37871 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00427 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00042 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00559 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47515 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.38239 * 120.00487 * 100.00100 * 13 12 11 15 15 C 1.38212 * 120.01312 * 179.97438 * 14 13 12 16 16 C 1.38268 * 120.01892 * 0.02562 * 15 14 13 17 17 C 1.38191 * 120.01002 * 359.97438 * 16 15 14 18 18 C 1.38302 * 120.00789 * 279.72389 * 13 12 11 19 19 Br 1.89104 * 120.00641 * 0.02654 * 18 13 12 20 20 H 0.96996 * 120.00288 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46949 * 60.00004 * 9 7 2 22 22 H 1.09005 * 109.47134 * 299.99983 * 9 7 2 23 23 H 1.00899 * 110.99900 * 56.04064 * 10 9 7 24 24 H 1.09002 * 109.47104 * 59.99767 * 11 10 9 25 25 H 1.08998 * 109.46828 * 300.00600 * 11 10 9 26 26 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 27 27 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 28 28 H 1.08002 * 119.99356 * 359.97438 * 14 13 12 29 29 H 1.08004 * 119.99023 * 179.97438 * 15 14 13 30 30 H 1.07996 * 119.99335 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.00907 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0014 -2.5789 0.0022 11 6 5.4698 -2.6181 0.0034 12 6 5.9412 -4.0737 0.0039 13 6 7.4477 -4.1138 0.0045 14 6 8.1327 -4.3398 1.1838 15 6 9.5143 -4.3772 1.1845 16 6 10.2120 -4.1881 0.0058 17 6 9.5281 -3.9621 -1.1736 18 6 8.1449 -3.9303 -1.1756 19 35 7.2082 -3.6282 -2.7904 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6799 0.8912 22 1 3.8753 -0.6803 -0.8889 23 1 3.6261 -3.0958 -0.7789 24 1 5.8460 -2.1137 0.8935 25 1 5.8474 -2.1146 -0.8864 26 1 5.5650 -4.5777 -0.8863 27 1 5.5635 -4.5775 0.8937 28 1 7.5882 -4.4872 2.1048 29 1 10.0492 -4.5534 2.1061 30 1 11.2916 -4.2169 0.0068 31 1 10.0730 -3.8148 -2.0943 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258934133.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:28 Heat of formation + Delta-G solvation = 19.256905 kcal Electronic energy + Delta-G solvation = -14036.025065 eV Core-core repulsion = 11556.089525 eV Total energy + Delta-G solvation = -2479.935540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.58706 -35.94679 -33.35331 -32.33994 -31.90912 -29.57171 -28.63554 -26.14775 -22.80069 -22.57475 -21.05821 -20.80355 -16.84641 -16.75108 -15.92749 -15.29755 -14.87706 -14.25924 -14.02082 -13.63990 -13.55121 -12.89619 -12.82953 -12.31372 -12.18384 -11.48381 -11.39757 -11.29331 -11.07176 -10.81798 -10.48396 -10.36764 -10.12728 -9.78467 -9.27817 -9.00799 -8.73362 -8.57748 -7.44933 -6.04022 -4.01729 0.94452 1.12130 1.59163 3.30208 3.37429 3.40915 3.44836 4.44012 4.54490 4.64535 4.76029 5.07918 5.14118 5.28524 5.33232 5.44053 5.50991 5.60766 5.78980 5.97771 6.05360 6.08424 6.22384 6.38996 6.45912 6.65740 6.81690 7.04675 7.63298 7.91114 8.36251 8.67243 9.04124 9.58202 11.09329 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.025194 B = 0.004720 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.111754 B = 5930.700315 C = 6422.511909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.679 5.679 11 C 0.063 3.937 12 C -0.090 4.090 13 C -0.043 4.043 14 C -0.111 4.111 15 C -0.104 4.104 16 C -0.126 4.126 17 C -0.091 4.091 18 C -0.092 4.092 19 Br -0.046 7.046 20 H 0.263 0.737 21 H 0.025 0.975 22 H -0.020 1.020 23 H 0.335 0.665 24 H 0.063 0.937 25 H 0.027 0.973 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.279 -9.876 -2.833 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.309 5.309 11 C -0.067 4.067 12 C -0.127 4.127 13 C -0.045 4.045 14 C -0.130 4.130 15 C -0.123 4.123 16 C -0.145 4.145 17 C -0.111 4.111 18 C -0.171 4.171 19 Br 0.040 6.960 20 H 0.073 0.927 21 H 0.044 0.956 22 H -0.003 1.003 23 H 0.152 0.848 24 H 0.081 0.919 25 H 0.045 0.955 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 21.701 -9.692 -2.758 23.927 hybrid contribution 0.854 1.196 -0.560 1.573 sum 22.555 -8.496 -3.318 24.329 Atomic orbital electron populations 1.69902 1.06141 1.26851 1.51108 1.24898 0.94741 0.98918 0.94748 0.86832 0.80355 0.83896 0.78483 1.20330 1.21135 1.19169 1.21070 0.88953 0.94823 1.50481 0.90257 1.19996 0.96584 0.85002 0.94753 1.60485 1.04229 1.16758 1.49453 1.21860 0.90807 0.93788 1.00268 1.20798 0.88720 0.99022 1.04202 1.19941 0.96787 0.96152 0.91660 1.21153 0.94226 1.00091 0.97549 1.21284 0.94305 0.98388 0.98275 1.21113 1.00014 1.01041 0.92301 1.21091 0.92065 0.98881 0.99089 1.21820 0.94740 1.08229 0.92341 1.96738 1.76213 1.95096 1.27974 0.92670 0.95650 1.00265 0.84771 0.91858 0.95491 0.90181 0.89651 0.84918 0.85499 0.85427 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.52 -15.01 9.87 -34.44 -0.34 -15.35 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.16 4.11 4.51 -4.98 -0.02 4.09 16 10 N -0.68 -14.32 6.49 -115.06 -0.75 -15.07 16 11 C 0.06 1.09 5.59 -3.83 -0.02 1.07 16 12 C -0.09 -1.26 5.02 -27.88 -0.14 -1.40 16 13 C -0.04 -0.54 5.14 -104.60 -0.54 -1.08 16 14 C -0.11 -1.21 9.67 -39.59 -0.38 -1.59 16 15 C -0.10 -0.95 10.05 -39.58 -0.40 -1.35 16 16 C -0.13 -1.13 10.05 -39.59 -0.40 -1.53 16 17 C -0.09 -0.95 9.79 -39.56 -0.39 -1.34 16 18 C -0.09 -1.14 6.22 -39.52 -0.25 -1.38 16 19 Br -0.05 -0.59 30.87 -68.01 -2.10 -2.69 16 20 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 21 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 22 H -0.02 -0.51 7.57 -51.93 -0.39 -0.90 16 23 H 0.34 6.85 8.72 -39.29 -0.34 6.51 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.03 0.48 7.01 -51.93 -0.36 0.11 16 26 H 0.08 1.12 7.13 -51.93 -0.37 0.75 16 27 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 28 H 0.13 1.26 8.04 -52.49 -0.42 0.83 16 29 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 30 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 283.27 15.07 4.27 4.27 Total: -1.00 -31.25 283.27 -9.41 -40.66 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.96 Total: 0.70 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -2.97 Total: -17.95 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.03 Total: -42.32 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.10 Total: -2.69 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.25 -9.41 -40.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258934133.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.915 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds