Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 119.99846 * 2 1 4 4 H 1.08004 * 120.00115 * 202.80205 * 3 2 1 5 5 C 1.38821 * 119.99924 * 22.80639 * 3 2 1 6 6 N 1.31614 * 119.99898 * 12.94181 * 5 3 2 7 7 Si 1.86801 * 119.99675 * 192.94167 * 5 3 2 8 8 H 1.48501 * 109.47191 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.46805 * 119.99970 * 7 5 3 10 10 H 1.48501 * 109.46704 * 239.99604 * 7 5 3 11 11 C 1.46499 * 120.00025 * 179.72374 * 2 1 3 12 12 C 1.53002 * 109.47162 * 90.00265 * 11 2 1 13 13 C 1.50698 * 109.47017 * 179.97438 * 12 11 2 14 14 C 1.38243 * 120.00172 * 100.00310 * 13 12 11 15 15 C 1.38215 * 120.00580 * 179.97438 * 14 13 12 16 16 C 1.38257 * 120.02401 * 0.02562 * 15 14 13 17 17 C 1.38202 * 120.00992 * 359.97438 * 16 15 14 18 18 C 1.38302 * 120.00599 * 279.72178 * 13 12 11 19 19 Br 1.89099 * 120.00961 * 0.03018 * 18 13 12 20 20 H 1.08997 * 109.47471 * 275.39537 * 1 2 3 21 21 H 1.08999 * 109.47060 * 35.39386 * 1 2 3 22 22 H 1.09002 * 109.46803 * 155.39157 * 1 2 3 23 23 H 0.97001 * 119.99619 * 180.02562 * 6 5 3 24 24 H 1.09003 * 109.46611 * 210.00354 * 11 2 1 25 25 H 1.08995 * 109.47275 * 329.99967 * 11 2 1 26 26 H 1.08998 * 109.46993 * 300.00378 * 12 11 2 27 27 H 1.09001 * 109.46633 * 59.99932 * 12 11 2 28 28 H 1.07996 * 119.99726 * 359.97438 * 14 13 12 29 29 H 1.08009 * 119.98733 * 179.97438 * 15 14 13 30 30 H 1.08003 * 119.99855 * 179.97438 * 16 15 14 31 31 H 1.07996 * 120.00025 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1664 1.2225 -0.3625 5 6 1.5369 2.3411 0.4660 6 7 0.4078 2.2621 1.1375 7 14 2.3151 4.0077 0.1399 8 1 3.5720 3.8252 -0.6297 9 1 1.3735 4.8493 -0.6413 10 1 2.6188 4.6735 1.4322 11 6 2.1975 -1.2687 0.0061 12 6 2.4526 -1.7173 -1.4342 13 6 3.2067 -3.0220 -1.4279 14 6 2.5317 -4.2115 -1.6300 15 6 3.2233 -5.4082 -1.6247 16 6 4.5901 -5.4163 -1.4169 17 6 5.2657 -4.2277 -1.2148 18 6 4.5748 -3.0292 -1.2257 19 35 5.4996 -1.4019 -0.9563 20 1 -0.3634 0.0966 1.0231 21 1 -0.3633 0.8377 -0.5952 22 1 -0.3633 -0.9344 -0.4280 23 1 -0.0206 3.0693 1.4628 24 1 3.1499 -1.1358 0.5194 25 1 1.6085 -2.0258 0.5236 26 1 1.5002 -1.8500 -1.9475 27 1 3.0417 -0.9601 -1.9516 28 1 1.4640 -4.2056 -1.7920 29 1 2.6956 -6.3373 -1.7822 30 1 5.1301 -6.3517 -1.4124 31 1 6.3334 -4.2343 -1.0528 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258956974.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = 44.277010 kcal Electronic energy + Delta-G solvation = -14544.317436 eV Core-core repulsion = 12065.466849 eV Total energy + Delta-G solvation = -2478.850587 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.29505 -35.80474 -33.13687 -31.97354 -30.84912 -29.16696 -27.70514 -25.77235 -23.84366 -22.35752 -21.21641 -20.08954 -16.64237 -16.55941 -15.40400 -15.13807 -14.69283 -13.69389 -13.57552 -13.35344 -13.25497 -12.73480 -12.30526 -12.10363 -11.25375 -11.15431 -11.04583 -10.81129 -10.77062 -10.69629 -10.43909 -10.07889 -9.88722 -9.70648 -9.59717 -8.79088 -8.56350 -8.37715 -6.65938 -5.65126 -3.10881 1.20873 1.38592 1.92902 3.41656 3.48956 3.51315 3.71184 4.55494 4.85994 4.92301 5.01836 5.35096 5.44482 5.50613 5.66852 5.78509 5.92683 6.04938 6.24895 6.30974 6.38972 6.45522 6.51751 6.79420 6.88598 6.93430 7.04454 7.43422 7.79137 7.90158 8.47510 9.31583 9.94899 10.43862 11.39741 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.006498 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.067797 B = 4308.103106 C = 5295.247152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.599 5.599 3 C -0.247 4.247 4 H 0.071 0.929 5 C -0.001 4.001 6 N -0.910 5.910 7 Si 0.900 3.100 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.160 3.840 12 C -0.115 4.115 13 C -0.035 4.035 14 C -0.118 4.118 15 C -0.105 4.105 16 C -0.133 4.133 17 C -0.091 4.091 18 C -0.094 4.094 19 Br -0.042 7.042 20 H 0.031 0.969 21 H 0.040 0.960 22 H -0.004 1.004 23 H 0.250 0.750 24 H 0.055 0.945 25 H 0.033 0.967 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.507 -14.437 -5.808 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.321 5.321 3 C -0.376 4.376 4 H 0.088 0.912 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.730 3.270 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.032 3.968 12 C -0.156 4.156 13 C -0.037 4.037 14 C -0.137 4.137 15 C -0.124 4.124 16 C -0.152 4.152 17 C -0.111 4.111 18 C -0.174 4.174 19 Br 0.044 6.956 20 H 0.049 0.951 21 H 0.059 0.941 22 H 0.015 0.985 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.734 -13.647 -5.617 17.148 hybrid contribution 0.120 0.541 -0.213 0.594 sum 8.853 -13.106 -5.829 16.856 Atomic orbital electron populations 1.20801 0.82766 0.95231 0.99503 1.43918 1.01771 1.00694 1.85680 1.19266 0.98088 0.85378 1.34892 0.91159 1.25009 0.97928 0.98417 0.98487 1.70080 1.19378 1.26860 1.39210 0.86243 0.78631 0.84609 0.77500 1.20304 1.21670 1.21792 1.20664 0.96580 0.88219 0.91370 1.21629 0.99091 0.91777 1.03077 1.20151 0.91869 0.97041 0.94667 1.21112 1.00174 0.91457 1.00976 1.21223 0.94419 0.98014 0.98731 1.21034 0.94653 0.97477 1.02072 1.21069 0.99908 0.91100 0.99046 1.21834 0.94863 0.92327 1.08364 1.96756 1.75068 1.28243 1.95514 0.95061 0.94130 0.98503 0.93931 0.92699 0.94905 0.91491 0.89958 0.85381 0.85868 0.85745 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 8.97 59.85 0.54 4.59 16 2 N -0.60 -15.37 2.92 -181.11 -0.53 -15.90 16 3 C -0.25 -6.88 9.66 -15.06 -0.15 -7.02 16 4 H 0.07 1.93 7.86 -52.48 -0.41 1.52 16 5 C 0.00 -0.02 5.10 -17.43 -0.09 -0.11 16 6 N -0.91 -27.05 10.69 55.49 0.59 -26.46 16 7 Si 0.90 22.33 29.57 -169.99 -5.03 17.30 16 8 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 C 0.16 3.40 5.55 -4.04 -0.02 3.38 16 12 C -0.12 -2.11 5.08 -27.88 -0.14 -2.25 16 13 C -0.03 -0.54 5.14 -104.60 -0.54 -1.08 16 14 C -0.12 -1.56 9.67 -39.59 -0.38 -1.95 16 15 C -0.11 -1.17 10.05 -39.58 -0.40 -1.57 16 16 C -0.13 -1.46 10.05 -39.59 -0.40 -1.85 16 17 C -0.09 -1.14 9.79 -39.56 -0.39 -1.53 16 18 C -0.09 -1.42 6.22 -39.52 -0.25 -1.66 16 19 Br -0.04 -0.67 30.87 -68.01 -2.10 -2.77 16 20 H 0.03 0.85 7.33 -51.93 -0.38 0.47 16 21 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 22 H 0.00 -0.08 8.03 -51.93 -0.42 -0.50 16 23 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.05 1.20 6.91 -51.93 -0.36 0.84 16 25 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 26 H 0.07 1.19 8.01 -51.93 -0.42 0.78 16 27 H 0.08 1.62 7.13 -51.93 -0.37 1.25 16 28 H 0.13 1.52 8.04 -52.49 -0.42 1.10 16 29 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 30 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 281.86 15.07 4.25 4.25 Total: -1.00 -30.20 281.86 -9.01 -39.21 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: -3.98 Total: -4.59 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -2.21 Total: -11.05 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.06 Total: -42.35 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.10 Total: -2.77 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.20 -9.01 -39.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258956974.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.485 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds