Wall clock time and date at job start Tue Mar 31 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 119.99846 * 2 1 4 4 H 1.08004 * 120.00115 * 202.80205 * 3 2 1 5 5 C 1.38821 * 119.99924 * 22.80639 * 3 2 1 6 6 N 1.31614 * 119.99898 * 12.94181 * 5 3 2 7 7 Si 1.86801 * 119.99675 * 192.94167 * 5 3 2 8 8 H 1.48501 * 109.47191 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.46805 * 119.99970 * 7 5 3 10 10 H 1.48501 * 109.46704 * 239.99604 * 7 5 3 11 11 C 1.46499 * 120.00025 * 179.72374 * 2 1 3 12 12 C 1.53002 * 109.47162 * 90.00265 * 11 2 1 13 13 C 1.50698 * 109.47017 * 179.97438 * 12 11 2 14 14 C 1.38243 * 120.00172 * 100.00310 * 13 12 11 15 15 C 1.38215 * 120.00580 * 179.97438 * 14 13 12 16 16 C 1.38257 * 120.02401 * 0.02562 * 15 14 13 17 17 C 1.38202 * 120.00992 * 359.97438 * 16 15 14 18 18 C 1.38302 * 120.00599 * 279.72178 * 13 12 11 19 19 Br 1.89099 * 120.00961 * 0.03018 * 18 13 12 20 20 H 1.08997 * 109.47471 * 275.39537 * 1 2 3 21 21 H 1.08999 * 109.47060 * 35.39386 * 1 2 3 22 22 H 1.09002 * 109.46803 * 155.39157 * 1 2 3 23 23 H 0.97001 * 119.99619 * 180.02562 * 6 5 3 24 24 H 1.09003 * 109.46611 * 210.00354 * 11 2 1 25 25 H 1.08995 * 109.47275 * 329.99967 * 11 2 1 26 26 H 1.08998 * 109.46993 * 300.00378 * 12 11 2 27 27 H 1.09001 * 109.46633 * 59.99932 * 12 11 2 28 28 H 1.07996 * 119.99726 * 359.97438 * 14 13 12 29 29 H 1.08009 * 119.98733 * 179.97438 * 15 14 13 30 30 H 1.08003 * 119.99855 * 179.97438 * 16 15 14 31 31 H 1.07996 * 120.00025 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1664 1.2225 -0.3625 5 6 1.5369 2.3411 0.4660 6 7 0.4078 2.2621 1.1375 7 14 2.3151 4.0077 0.1399 8 1 3.5720 3.8252 -0.6297 9 1 1.3735 4.8493 -0.6413 10 1 2.6188 4.6735 1.4322 11 6 2.1975 -1.2687 0.0061 12 6 2.4526 -1.7173 -1.4342 13 6 3.2067 -3.0220 -1.4279 14 6 2.5317 -4.2115 -1.6300 15 6 3.2233 -5.4082 -1.6247 16 6 4.5901 -5.4163 -1.4169 17 6 5.2657 -4.2277 -1.2148 18 6 4.5748 -3.0292 -1.2257 19 35 5.4996 -1.4019 -0.9563 20 1 -0.3634 0.0966 1.0231 21 1 -0.3633 0.8377 -0.5952 22 1 -0.3633 -0.9344 -0.4280 23 1 -0.0206 3.0693 1.4628 24 1 3.1499 -1.1358 0.5194 25 1 1.6085 -2.0258 0.5236 26 1 1.5002 -1.8500 -1.9475 27 1 3.0417 -0.9601 -1.9516 28 1 1.4640 -4.2056 -1.7920 29 1 2.6956 -6.3373 -1.7822 30 1 5.1301 -6.3517 -1.4124 31 1 6.3334 -4.2343 -1.0528 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258956974.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:23 Heat of formation + Delta-G solvation = 28.422729 kcal Electronic energy + Delta-G solvation = -14545.004929 eV Core-core repulsion = 12065.466849 eV Total energy + Delta-G solvation = -2479.538080 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.34196 -37.65207 -34.64083 -33.14042 -32.60088 -30.29957 -29.14990 -27.86847 -25.48035 -23.36202 -22.74203 -21.59395 -18.69842 -17.57956 -16.88628 -16.57169 -15.97787 -15.47963 -15.26072 -14.76408 -14.35938 -14.06217 -13.91934 -13.69064 -12.97106 -12.80736 -12.72360 -12.47965 -12.21012 -12.08324 -12.01255 -11.89351 -11.79795 -11.34439 -10.92211 -10.64310 -9.79176 -9.56302 -8.72243 -7.80111 -5.28555 0.21082 0.39349 0.81364 1.44185 1.45439 1.55893 2.51275 2.73350 3.33057 3.61572 3.88932 4.05273 4.16283 4.33202 4.48414 4.54976 4.65775 4.72021 4.84930 4.87965 5.00633 5.13401 5.26322 5.35597 5.48001 5.51882 5.60642 5.67326 5.72742 5.97315 6.36168 7.18255 7.89872 8.33567 9.23082 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.006498 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.067797 B = 4308.103106 C = 5295.247152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.617 5.617 3 C -0.249 4.249 4 H 0.069 0.931 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.961 3.039 8 H -0.269 1.269 9 H -0.289 1.289 10 H -0.292 1.292 11 C 0.162 3.838 12 C -0.097 4.097 13 C -0.061 4.061 14 C -0.123 4.123 15 C -0.098 4.098 16 C -0.121 4.121 17 C -0.097 4.097 18 C -0.109 4.109 19 Br -0.065 7.065 20 H 0.005 0.995 21 H 0.015 0.985 22 H 0.032 0.968 23 H 0.247 0.753 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.349 -16.839 -6.643 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.339 5.339 3 C -0.380 4.380 4 H 0.087 0.913 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.790 3.210 8 H -0.193 1.193 9 H -0.216 1.216 10 H -0.219 1.219 11 C 0.036 3.964 12 C -0.137 4.137 13 C -0.064 4.064 14 C -0.141 4.141 15 C -0.116 4.116 16 C -0.139 4.139 17 C -0.117 4.117 18 C -0.188 4.188 19 Br 0.020 6.980 20 H 0.023 0.977 21 H 0.034 0.966 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.158 0.842 29 H 0.177 0.823 30 H 0.179 0.821 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.603 -16.089 -6.469 19.822 hybrid contribution -0.101 1.084 0.028 1.089 sum 9.503 -15.005 -6.442 18.893 Atomic orbital electron populations 1.20551 0.82781 0.95911 0.97668 1.44160 1.02103 1.01631 1.86057 1.19507 0.98105 0.86517 1.33830 0.91342 1.25735 0.98718 1.01619 0.98905 1.70234 1.20726 1.27299 1.40591 0.85286 0.78056 0.80548 0.77152 1.19345 1.21610 1.21879 1.20748 0.95565 0.86597 0.93540 1.21219 0.99299 0.93014 1.00156 1.19959 0.92154 0.96520 0.97746 1.21327 1.00946 0.91357 1.00508 1.21641 0.94682 0.98478 0.96843 1.21513 0.94801 0.98157 0.99445 1.21358 1.00902 0.90738 0.98692 1.21942 0.94820 0.92350 1.09728 1.96727 1.75401 1.30168 1.95683 0.97714 0.96617 0.94987 0.94378 0.93765 0.94131 0.91298 0.91997 0.84245 0.82332 0.82072 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.94 8.97 127.77 1.15 10.09 16 2 N -0.62 -32.03 2.92 -726.92 -2.12 -34.15 16 3 C -0.25 -14.11 9.66 84.04 0.81 -13.30 16 4 H 0.07 3.83 7.86 -2.91 -0.02 3.81 16 5 C -0.06 -3.20 5.10 84.86 0.43 -2.77 16 6 N -0.94 -57.25 10.69 21.65 0.23 -57.02 16 7 Si 0.96 46.60 29.57 68.60 2.03 48.63 16 8 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 9 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 10 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 11 C 0.16 6.90 5.55 86.38 0.48 7.38 16 12 C -0.10 -3.51 5.08 29.85 0.15 -3.35 16 13 C -0.06 -1.83 5.14 -19.85 -0.10 -1.93 16 14 C -0.12 -2.89 9.67 22.27 0.22 -2.68 16 15 C -0.10 -1.75 10.05 22.27 0.22 -1.52 16 16 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 17 C -0.10 -2.16 9.79 22.29 0.22 -1.94 16 18 C -0.11 -3.14 6.22 22.31 0.14 -3.00 16 19 Br -0.07 -2.10 30.87 -20.37 -0.63 -2.73 16 20 H 0.00 0.26 7.33 -2.39 -0.02 0.24 16 21 H 0.02 0.84 7.34 -2.39 -0.02 0.82 16 22 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 23 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 24 H 0.04 1.96 6.91 -2.39 -0.02 1.95 16 25 H 0.04 1.64 8.07 -2.39 -0.02 1.62 16 26 H 0.07 2.40 8.01 -2.39 -0.02 2.39 16 27 H 0.06 2.47 7.13 -2.39 -0.02 2.45 16 28 H 0.14 2.90 8.04 -2.91 -0.02 2.87 16 29 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -65.86 281.86 4.55 -61.31 By element: Atomic # 1 Polarization: -2.26 SS G_CDS: 1.11 Total: -1.16 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 3.94 Total: -14.89 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -1.89 Total: -91.17 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 35 Polarization: -2.10 SS G_CDS: -0.63 Total: -2.73 kcal Total: -65.86 4.55 -61.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258956974.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.731 kcal (2) G-P(sol) polarization free energy of solvation -65.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds