Wall clock time and date at job start Tue Mar 31 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76196 * 102.99987 * 2 1 4 4 C 1.38268 * 123.54758 * 0.02562 * 3 2 1 5 5 C 1.33485 * 115.09731 * 179.97438 * 4 3 2 6 6 S 1.70551 * 111.27491 * 359.72794 * 5 4 3 7 7 C 1.37758 * 123.54799 * 179.97438 * 3 2 1 8 8 C 1.41313 * 125.49716 * 0.02562 * 7 3 2 9 9 O 1.21854 * 119.99916 * 7.76508 * 8 7 3 10 10 N 1.34774 * 120.00199 * 187.77108 * 8 7 3 11 11 C 1.36928 * 120.00182 * 178.89859 * 10 8 7 12 12 H 1.07997 * 119.99621 * 325.42227 * 11 10 8 13 13 C 1.38947 * 119.99863 * 145.41603 * 11 10 8 14 14 N 1.31446 * 120.00039 * 359.07545 * 13 11 10 15 15 Si 1.86797 * 119.99881 * 179.07607 * 13 11 10 16 16 H 1.48510 * 109.47077 * 270.00091 * 15 13 11 17 17 H 1.48500 * 109.47145 * 29.99793 * 15 13 11 18 18 H 1.48492 * 109.47255 * 150.00186 * 15 13 11 19 19 C 1.46501 * 119.99685 * 358.89674 * 10 8 7 20 20 C 1.53001 * 117.49561 * 139.74561 * 19 10 8 21 21 C 1.53008 * 117.49967 * 71.08996 * 19 10 8 22 22 H 1.08996 * 109.47535 * 300.00039 * 1 2 3 23 23 H 1.09007 * 109.47034 * 60.00457 * 1 2 3 24 24 H 1.09001 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.07995 * 122.45082 * 359.96433 * 4 3 2 26 26 H 1.08003 * 124.36168 * 180.02562 * 5 4 3 27 27 H 0.96997 * 119.99743 * 175.02004 * 14 13 11 28 28 H 1.08998 * 115.55458 * 285.41555 * 19 10 8 29 29 H 1.08997 * 117.50059 * 359.97438 * 20 19 10 30 30 H 1.09004 * 117.50108 * 145.02358 * 20 19 10 31 31 H 1.08990 * 117.49620 * 214.98012 * 21 19 10 32 32 H 1.09006 * 117.49306 * 359.97354 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.2594 2.7206 0.0005 5 6 1.7476 3.9629 0.0010 6 16 3.4530 3.9577 0.0083 7 6 3.5003 2.2003 0.0005 8 6 4.6724 1.4110 0.0006 9 8 4.5938 0.2035 -0.1424 10 7 5.8773 1.9938 0.1589 11 6 7.0113 1.2267 0.1816 12 1 6.9869 0.2399 0.6199 13 6 8.1931 1.7177 -0.3595 14 7 8.2182 2.9113 -0.9093 15 14 9.7464 0.6814 -0.3054 16 1 10.4907 0.9701 0.9469 17 1 9.3828 -0.7579 -0.3445 18 1 10.6004 1.0083 -1.4753 19 6 5.9737 3.4482 0.3067 20 6 6.9761 3.9895 1.3281 21 6 5.4747 4.0597 1.6175 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.1993 2.5145 0.0004 26 1 1.1407 4.8563 0.0018 27 1 9.0575 3.2837 -1.2219 28 1 5.8247 4.0245 -0.6063 29 1 7.5635 3.2636 1.8903 30 1 7.4863 4.9221 1.0871 31 1 4.9976 5.0383 1.5667 32 1 5.0742 3.3799 2.3696 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264408480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:39 Heat of formation + Delta-G solvation = 44.562539 kcal Electronic energy + Delta-G solvation = -18191.628121 eV Core-core repulsion = 15372.014179 eV Total energy + Delta-G solvation = -2819.613942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.03464 -37.30418 -35.83393 -33.11834 -31.27164 -29.46233 -28.74207 -25.72075 -23.96549 -21.95548 -21.58001 -20.42329 -18.95521 -17.38390 -16.92946 -15.84742 -15.25126 -15.05236 -14.64233 -14.11440 -13.91187 -13.85499 -13.28479 -13.06569 -13.01522 -12.52185 -12.20967 -12.12792 -11.59077 -11.26913 -11.18458 -10.93776 -10.67600 -10.37348 -10.26495 -9.97713 -9.80680 -9.28598 -8.97063 -8.85868 -8.35049 -8.00683 -7.71026 -6.73038 -6.35415 -3.99294 1.07777 1.74440 2.33095 2.68701 2.77619 3.13708 3.16633 3.23670 3.30206 4.07149 4.28755 4.58559 4.74551 5.10888 5.28644 5.29379 5.35609 5.50919 5.67017 5.82326 5.86960 5.93944 6.05926 6.21635 6.27002 6.49174 6.59615 6.69685 6.83542 7.05072 7.48405 8.12698 8.43620 9.11669 9.27951 9.90456 10.66673 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.006903 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.110787 B = 4055.047140 C = 5053.960619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 S -0.010 6.010 3 C -0.086 4.086 4 C -0.148 4.148 5 C -0.290 4.290 6 S 0.262 5.738 7 C -0.208 4.208 8 C 0.514 3.486 9 O -0.557 6.557 10 N -0.408 5.408 11 C -0.299 4.299 12 H 0.097 0.903 13 C 0.041 3.959 14 N -0.864 5.864 15 Si 0.924 3.076 16 H -0.277 1.277 17 H -0.267 1.267 18 H -0.282 1.282 19 C 0.098 3.902 20 C -0.113 4.113 21 C -0.221 4.221 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.126 0.874 26 H 0.154 0.846 27 H 0.269 0.731 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.437 5.163 2.871 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.352 4.352 2 S 0.229 5.771 3 C -0.213 4.213 4 C -0.183 4.183 5 C -0.429 4.429 6 S 0.533 5.467 7 C -0.338 4.338 8 C 0.305 3.695 9 O -0.443 6.443 10 N -0.126 5.126 11 C -0.427 4.427 12 H 0.114 0.886 13 C -0.165 4.165 14 N -0.500 5.500 15 Si 0.750 3.250 16 H -0.203 1.203 17 H -0.192 1.192 18 H -0.208 1.208 19 C -0.010 4.010 20 C -0.151 4.151 21 C -0.263 4.263 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.118 0.882 25 H 0.144 0.856 26 H 0.172 0.828 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.689 4.797 2.615 9.432 hybrid contribution -1.321 -0.060 -0.105 1.326 sum -9.010 4.736 2.510 10.484 Atomic orbital electron populations 1.23878 1.00757 1.06027 1.04577 1.86494 0.99301 0.99838 1.91447 1.21275 0.94183 0.98561 1.07275 1.19668 0.99284 0.91400 1.07986 1.25667 1.05405 1.01112 1.10719 1.84048 0.95633 1.01551 1.65493 1.23567 0.96859 0.97115 1.16289 1.15584 0.82252 0.87655 0.83982 1.90697 1.85190 1.13398 1.54986 1.42982 1.05170 1.03835 1.60660 1.19543 0.86553 1.00482 1.36143 0.88571 1.25429 0.99962 0.96603 0.94523 1.69896 1.27208 1.15847 1.37089 0.85946 0.80712 0.80554 0.77740 1.20298 1.19170 1.20778 1.21201 1.04247 0.83593 0.91969 1.22620 0.89994 1.01637 1.00884 1.23579 0.99363 1.02333 1.00996 0.90782 0.90707 0.88196 0.85592 0.82809 0.92054 0.87061 0.88561 0.89334 0.88574 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 9.34 101.05 0.94 -1.40 16 2 S -0.01 -0.19 20.55 -107.50 -2.21 -2.39 16 3 C -0.09 -1.69 6.17 -39.75 -0.25 -1.94 16 4 C -0.15 -2.42 9.47 -41.23 -0.39 -2.81 16 5 C -0.29 -4.36 10.89 29.07 0.32 -4.04 16 6 S 0.26 4.42 15.62 -107.50 -1.68 2.74 16 7 C -0.21 -4.52 6.03 -38.59 -0.23 -4.76 16 8 C 0.51 13.28 7.38 -15.09 -0.11 13.17 16 9 O -0.56 -15.94 14.65 5.05 0.07 -15.87 16 10 N -0.41 -10.43 2.90 -111.02 -0.32 -10.75 16 11 C -0.30 -8.11 8.44 -15.01 -0.13 -8.24 16 12 H 0.10 2.74 7.63 -52.49 -0.40 2.34 16 13 C 0.04 1.04 4.82 -17.45 -0.08 0.95 16 14 N -0.86 -21.88 10.58 55.50 0.59 -21.29 16 15 Si 0.92 20.27 29.56 -169.99 -5.02 15.24 16 16 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 C 0.10 2.12 2.31 -67.92 -0.16 1.96 16 20 C -0.11 -2.22 8.34 -26.69 -0.22 -2.44 16 21 C -0.22 -3.91 7.53 -26.69 -0.20 -4.11 16 22 H 0.07 0.86 7.96 -51.93 -0.41 0.45 16 23 H 0.07 0.88 7.97 -51.92 -0.41 0.47 16 24 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 25 H 0.13 1.72 6.71 -52.49 -0.35 1.37 16 26 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 27 H 0.27 6.46 8.32 -40.82 -0.34 6.12 16 28 H 0.11 2.44 7.26 -51.93 -0.38 2.06 16 29 H 0.10 2.05 7.63 -51.93 -0.40 1.65 16 30 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.10 1.41 7.24 -51.93 -0.38 1.03 16 32 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 289.10 15.07 4.36 4.36 Total: -1.00 -30.20 289.10 -8.28 -38.48 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.56 Total: 3.13 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.51 Total: -13.65 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.27 Total: -32.04 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.07 Total: -15.87 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -3.89 Total: 0.35 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.20 -8.28 -38.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264408480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.046 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds