Wall clock time and date at job start Tue Mar 31 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76196 * 102.99987 * 2 1 4 4 C 1.38268 * 123.54758 * 0.02562 * 3 2 1 5 5 C 1.33485 * 115.09731 * 179.97438 * 4 3 2 6 6 S 1.70551 * 111.27491 * 359.72794 * 5 4 3 7 7 C 1.37758 * 123.54799 * 179.97438 * 3 2 1 8 8 C 1.41313 * 125.49716 * 0.02562 * 7 3 2 9 9 O 1.21854 * 119.99916 * 7.76508 * 8 7 3 10 10 N 1.34774 * 120.00199 * 187.77108 * 8 7 3 11 11 C 1.36928 * 120.00182 * 178.89859 * 10 8 7 12 12 H 1.07997 * 119.99621 * 325.42227 * 11 10 8 13 13 C 1.38947 * 119.99863 * 145.41603 * 11 10 8 14 14 N 1.31446 * 120.00039 * 359.07545 * 13 11 10 15 15 Si 1.86797 * 119.99881 * 179.07607 * 13 11 10 16 16 H 1.48510 * 109.47077 * 270.00091 * 15 13 11 17 17 H 1.48500 * 109.47145 * 29.99793 * 15 13 11 18 18 H 1.48492 * 109.47255 * 150.00186 * 15 13 11 19 19 C 1.46501 * 119.99685 * 358.89674 * 10 8 7 20 20 C 1.53001 * 117.49561 * 139.74561 * 19 10 8 21 21 C 1.53008 * 117.49967 * 71.08996 * 19 10 8 22 22 H 1.08996 * 109.47535 * 300.00039 * 1 2 3 23 23 H 1.09007 * 109.47034 * 60.00457 * 1 2 3 24 24 H 1.09001 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.07995 * 122.45082 * 359.96433 * 4 3 2 26 26 H 1.08003 * 124.36168 * 180.02562 * 5 4 3 27 27 H 0.96997 * 119.99743 * 175.02004 * 14 13 11 28 28 H 1.08998 * 115.55458 * 285.41555 * 19 10 8 29 29 H 1.08997 * 117.50059 * 359.97438 * 20 19 10 30 30 H 1.09004 * 117.50108 * 145.02358 * 20 19 10 31 31 H 1.08990 * 117.49620 * 214.98012 * 21 19 10 32 32 H 1.09006 * 117.49306 * 359.97354 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.2594 2.7206 0.0005 5 6 1.7476 3.9629 0.0010 6 16 3.4530 3.9577 0.0083 7 6 3.5003 2.2003 0.0005 8 6 4.6724 1.4110 0.0006 9 8 4.5938 0.2035 -0.1424 10 7 5.8773 1.9938 0.1589 11 6 7.0113 1.2267 0.1816 12 1 6.9869 0.2399 0.6199 13 6 8.1931 1.7177 -0.3595 14 7 8.2182 2.9113 -0.9093 15 14 9.7464 0.6814 -0.3054 16 1 10.4907 0.9701 0.9469 17 1 9.3828 -0.7579 -0.3445 18 1 10.6004 1.0083 -1.4753 19 6 5.9737 3.4482 0.3067 20 6 6.9761 3.9895 1.3281 21 6 5.4747 4.0597 1.6175 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.1993 2.5145 0.0004 26 1 1.1407 4.8563 0.0018 27 1 9.0575 3.2837 -1.2219 28 1 5.8247 4.0245 -0.6063 29 1 7.5635 3.2636 1.8903 30 1 7.4863 4.9221 1.0871 31 1 4.9976 5.0383 1.5667 32 1 5.0742 3.3799 2.3696 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264408480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:39 Heat of formation + Delta-G solvation = 26.220664 kcal Electronic energy + Delta-G solvation = -18192.423484 eV Core-core repulsion = 15372.014179 eV Total energy + Delta-G solvation = -2820.409305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80022 -38.77559 -37.52104 -34.95801 -33.15465 -30.94756 -29.82633 -27.46962 -25.53241 -23.51120 -23.22922 -22.00246 -20.37820 -19.09876 -18.70366 -17.35235 -17.06666 -16.66208 -16.03801 -15.82446 -15.64394 -15.34174 -14.68180 -14.44432 -14.19559 -13.92609 -13.68786 -13.57834 -13.21888 -12.93626 -12.87343 -12.64802 -12.38560 -12.14826 -11.78816 -11.57936 -11.22661 -10.89795 -10.65482 -10.30579 -10.15615 -9.60528 -9.42462 -8.30962 -8.15572 -6.01524 -0.36558 0.35153 1.04348 1.34720 1.38192 1.40857 1.46754 1.52497 1.80946 2.26901 2.47470 2.90739 3.05071 3.25014 4.04164 4.12150 4.24233 4.33766 4.35807 4.37093 4.42291 4.52966 4.78724 4.83008 4.95727 5.10273 5.16830 5.28749 5.30462 5.43150 5.46589 6.15504 6.54956 7.17423 7.39595 8.01803 8.73003 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.006903 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.110787 B = 4055.047140 C = 5053.960619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 S -0.098 6.098 3 C -0.069 4.069 4 C -0.163 4.163 5 C -0.256 4.256 6 S 0.302 5.698 7 C -0.279 4.279 8 C 0.504 3.496 9 O -0.608 6.608 10 N -0.425 5.425 11 C -0.338 4.338 12 H 0.062 0.938 13 C 0.015 3.985 14 N -0.874 5.874 15 Si 0.980 3.020 16 H -0.262 1.262 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.075 3.925 20 C -0.115 4.115 21 C -0.184 4.184 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.120 0.880 25 H 0.160 0.840 26 H 0.202 0.798 27 H 0.275 0.725 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.750 7.973 3.111 14.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.325 4.325 2 S 0.142 5.858 3 C -0.198 4.198 4 C -0.197 4.197 5 C -0.395 4.395 6 S 0.572 5.428 7 C -0.407 4.407 8 C 0.297 3.703 9 O -0.497 6.497 10 N -0.142 5.142 11 C -0.466 4.466 12 H 0.080 0.920 13 C -0.189 4.189 14 N -0.510 5.510 15 Si 0.804 3.196 16 H -0.186 1.186 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.032 4.032 20 C -0.153 4.153 21 C -0.224 4.224 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.139 0.861 25 H 0.177 0.823 26 H 0.219 0.781 27 H 0.085 0.915 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.156 0.844 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.982 7.647 2.866 12.897 hybrid contribution -0.863 -0.920 -0.199 1.277 sum -10.844 6.727 2.667 13.037 Atomic orbital electron populations 1.23890 0.94425 1.07978 1.06236 1.86765 1.06206 1.01670 1.91172 1.21616 0.94451 0.98841 1.04905 1.19932 1.00285 0.90815 1.08694 1.26198 1.04631 1.02341 1.06303 1.83605 0.97101 0.97411 1.64635 1.23344 0.95985 1.00148 1.21244 1.16255 0.83652 0.87666 0.82762 1.90633 1.86477 1.15706 1.56878 1.43104 1.04588 1.05368 1.61157 1.19357 0.88388 1.00306 1.38576 0.92029 1.25978 1.01652 0.97584 0.93727 1.69946 1.27974 1.16234 1.36848 0.85139 0.77785 0.78133 0.78577 1.18641 1.20900 1.19700 1.21220 1.07237 0.81522 0.93208 1.22602 0.91044 1.01578 1.00057 1.23599 0.97890 1.03212 0.97735 0.88900 0.89042 0.86150 0.82300 0.78109 0.91540 0.87605 0.91029 0.87379 0.84447 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.34 113.37 1.06 -2.49 16 2 S -0.10 -3.75 20.55 -56.49 -1.16 -4.91 16 3 C -0.07 -2.67 6.17 22.16 0.14 -2.53 16 4 C -0.16 -4.69 9.47 21.20 0.20 -4.49 16 5 C -0.26 -6.36 10.89 66.74 0.73 -5.63 16 6 S 0.30 9.38 15.62 -56.49 -0.88 8.49 16 7 C -0.28 -12.21 6.03 22.91 0.14 -12.07 16 8 C 0.50 27.55 7.38 85.00 0.63 28.17 16 9 O -0.61 -37.58 14.65 -4.84 -0.07 -37.65 16 10 N -0.42 -22.82 2.90 -623.31 -1.81 -24.62 16 11 C -0.34 -19.59 8.44 84.07 0.71 -18.88 16 12 H 0.06 3.86 7.63 -2.91 -0.02 3.84 16 13 C 0.02 0.81 4.82 84.92 0.41 1.22 16 14 N -0.87 -44.98 10.58 21.67 0.23 -44.75 16 15 Si 0.98 42.96 29.56 68.60 2.03 44.98 16 16 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 19 C 0.08 3.28 2.31 44.99 0.10 3.39 16 20 C -0.11 -4.48 8.34 30.62 0.26 -4.22 16 21 C -0.18 -6.22 7.53 30.62 0.23 -5.99 16 22 H 0.09 1.79 7.96 -2.39 -0.02 1.77 16 23 H 0.09 1.81 7.97 -2.39 -0.02 1.79 16 24 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.16 3.48 6.71 -2.91 -0.02 3.46 16 26 H 0.20 3.18 8.06 -2.91 -0.02 3.16 16 27 H 0.27 13.18 8.32 -92.71 -0.77 12.41 16 28 H 0.11 4.64 7.26 -2.39 -0.02 4.62 16 29 H 0.07 3.14 7.63 -2.39 -0.02 3.12 16 30 H 0.11 3.72 8.14 -2.38 -0.02 3.70 16 31 H 0.14 3.48 7.24 -2.39 -0.02 3.46 16 32 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 Total: -1.00 -72.64 289.10 4.07 -68.57 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.14 Total: 13.42 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 4.60 Total: -23.53 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -1.58 Total: -69.38 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.07 Total: -37.65 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -2.04 Total: 3.58 kcal Total: -72.64 4.07 -68.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264408480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.795 kcal (2) G-P(sol) polarization free energy of solvation -72.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds