Wall clock time and date at job start Tue Mar 31 2020 05:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31359 * 1 3 3 Si 1.86796 * 120.00321 * 2 1 4 4 H 1.48499 * 109.47110 * 270.00733 * 3 2 1 5 5 H 1.48504 * 109.47068 * 30.00285 * 3 2 1 6 6 H 1.48492 * 109.47360 * 150.00417 * 3 2 1 7 7 C 1.39051 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99875 * 172.96403 * 7 2 1 9 9 N 1.36870 * 119.99948 * 353.23474 * 7 2 1 10 10 C 1.34775 * 120.00122 * 128.15955 * 9 7 2 11 11 O 1.21586 * 120.00444 * 186.04884 * 10 9 7 12 12 C 1.47737 * 119.99744 * 6.05150 * 10 9 7 13 13 C 1.39635 * 120.13361 * 329.25016 * 12 10 9 14 14 C 1.38163 * 119.84636 * 179.76934 * 13 12 10 15 15 F 1.35097 * 119.94176 * 180.25184 * 14 13 12 16 16 C 1.38579 * 120.11276 * 0.49167 * 14 13 12 17 17 C 1.38428 * 120.27000 * 359.78797 * 16 14 13 18 18 Cl 1.73605 * 119.92586 * 179.97438 * 17 16 14 19 19 C 1.38086 * 120.15103 * 359.95301 * 17 16 14 20 20 C 1.46504 * 120.00133 * 308.15356 * 9 7 2 21 21 C 1.52998 * 117.49353 * 1.17279 * 20 9 7 22 22 C 1.52999 * 117.49870 * 292.54791 * 20 9 7 23 23 H 0.96998 * 120.00139 * 5.00636 * 1 2 3 24 24 H 1.08005 * 120.07693 * 0.02868 * 13 12 10 25 25 H 1.08002 * 119.86871 * 179.76125 * 16 14 13 26 26 H 1.08003 * 120.06084 * 180.02562 * 19 17 16 27 27 H 1.08999 * 115.54418 * 146.87217 * 20 9 7 28 28 H 1.08998 * 117.50293 * 359.97438 * 21 20 9 29 29 H 1.09003 * 117.49702 * 145.02679 * 21 20 9 30 30 H 1.09004 * 117.49413 * 214.97301 * 22 20 9 31 31 H 1.08994 * 117.50014 * 359.97157 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4950 2.0464 -1.4001 5 1 1.4452 2.6526 0.7001 6 1 3.5452 1.4401 0.6999 7 6 2.0088 -1.2042 -0.0005 8 1 3.0827 -1.2077 -0.1151 9 7 1.3315 -2.3855 0.1386 10 6 1.5268 -3.3826 -0.7470 11 8 0.8467 -4.3888 -0.6893 12 6 2.5672 -3.2529 -1.7878 13 6 2.8965 -1.9950 -2.2969 14 6 3.8738 -1.8801 -3.2667 15 9 4.1975 -0.6635 -3.7569 16 6 4.5191 -3.0111 -3.7410 17 6 4.1923 -4.2610 -3.2438 18 17 5.0058 -5.6720 -3.8448 19 6 3.2210 -4.3881 -2.2706 20 6 0.3944 -2.5661 1.2501 21 6 0.1962 -1.3876 2.2055 22 6 0.9773 -2.6209 2.6637 23 1 -0.4850 0.8368 -0.0733 24 1 2.3914 -1.1135 -1.9303 25 1 5.2797 -2.9171 -4.5019 26 1 2.9675 -5.3639 -1.8834 27 1 -0.4712 -3.1935 1.0379 28 1 0.7633 -0.4781 2.0072 29 1 -0.8001 -1.2395 2.6221 30 1 0.4947 -3.2841 3.3816 31 1 2.0579 -2.5231 2.7666 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268105974.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:01 Heat of formation + Delta-G solvation = -16.449849 kcal Electronic energy + Delta-G solvation = -20006.884775 eV Core-core repulsion = 16616.368255 eV Total energy + Delta-G solvation = -3390.516520 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.57427 -39.58838 -37.96523 -36.37686 -35.98638 -33.41983 -31.76535 -30.40320 -29.99229 -25.44644 -23.94108 -22.37069 -21.34796 -20.91026 -19.59013 -17.95093 -16.74960 -16.19994 -15.90575 -15.54868 -15.31537 -15.12432 -14.60644 -14.14141 -13.98196 -13.26036 -13.17842 -12.99641 -12.80708 -12.23608 -11.72527 -11.66779 -11.44742 -11.09978 -10.98301 -10.94567 -10.92527 -10.51359 -10.46318 -9.79931 -9.37895 -9.01855 -8.70618 -8.55900 -8.35383 -7.41675 -6.55947 -4.41880 1.14693 1.39269 2.16397 2.99398 3.09482 3.10983 3.39366 3.87979 4.13785 4.39813 4.55938 4.69690 5.07827 5.11256 5.26509 5.46764 5.65375 5.85891 5.96560 6.11931 6.12524 6.20390 6.31562 6.42785 6.46490 6.76945 6.84868 6.99662 7.08790 7.22150 7.32535 7.85186 8.12214 8.78083 9.20365 9.66539 10.43614 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.006940 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.544556 B = 4033.348153 C = 5293.754331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.054 3.946 3 Si 0.901 3.099 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.360 4.360 8 H 0.091 0.909 9 N -0.402 5.402 10 C 0.524 3.476 11 O -0.588 6.588 12 C -0.055 4.055 13 C -0.101 4.101 14 C 0.087 3.913 15 F -0.137 7.137 16 C -0.142 4.142 17 C -0.027 4.027 18 Cl -0.072 7.072 19 C -0.080 4.080 20 C 0.106 3.894 21 C -0.132 4.132 22 C -0.221 4.221 23 H 0.274 0.726 24 H 0.189 0.811 25 H 0.139 0.861 26 H 0.142 0.858 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 -1.874 -3.042 7.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.155 4.155 3 Si 0.726 3.274 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.108 0.892 9 N -0.118 5.118 10 C 0.313 3.687 11 O -0.473 6.473 12 C -0.058 4.058 13 C -0.119 4.119 14 C 0.067 3.933 15 F -0.116 7.116 16 C -0.162 4.162 17 C -0.054 4.054 18 Cl -0.043 7.043 19 C -0.100 4.100 20 C 0.001 3.999 21 C -0.170 4.170 22 C -0.260 4.260 23 H 0.085 0.915 24 H 0.206 0.794 25 H 0.157 0.843 26 H 0.160 0.840 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.910 -2.277 -2.984 7.002 hybrid contribution 0.593 1.046 -0.202 1.219 sum 6.503 -1.232 -3.186 7.345 Atomic orbital electron populations 1.69980 1.05963 1.28400 1.42728 1.25545 0.95424 0.99633 0.94912 0.86307 0.80045 0.81587 0.79491 1.19316 1.20166 1.18802 1.19361 0.92084 0.82711 1.54606 0.89171 1.42609 1.36952 1.12074 1.20208 1.18068 0.84416 0.84733 0.81518 1.90653 1.49891 1.32223 1.74568 1.19793 0.96868 0.91880 0.97293 1.22863 0.94907 1.01615 0.92537 1.17502 0.98830 0.79904 0.97042 1.91494 1.91869 1.41541 1.86660 1.20941 1.02490 0.90258 1.02528 1.20276 0.98244 0.87449 0.99382 1.98348 1.78505 1.40054 1.87371 1.21142 0.93938 0.99840 0.95118 1.21165 0.94444 1.01822 0.82446 1.23017 0.99624 0.93844 1.00506 1.23407 1.00037 1.03523 0.99020 0.91508 0.79443 0.84338 0.84007 0.87684 0.86983 0.90653 0.90308 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.14 10.84 55.50 0.60 -19.54 16 2 C 0.05 1.24 3.06 -17.45 -0.05 1.19 16 3 Si 0.90 17.84 29.56 -169.99 -5.03 12.82 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.36 -8.31 5.30 -15.00 -0.08 -8.39 16 8 H 0.09 2.04 6.70 -52.49 -0.35 1.69 16 9 N -0.40 -9.60 2.74 -108.83 -0.30 -9.90 16 10 C 0.52 12.49 7.42 -12.38 -0.09 12.39 16 11 O -0.59 -15.22 16.51 5.29 0.09 -15.13 16 12 C -0.05 -1.13 5.61 -104.98 -0.59 -1.71 16 13 C -0.10 -1.97 7.92 -39.09 -0.31 -2.28 16 14 C 0.09 1.50 7.29 -39.48 -0.29 1.21 16 15 F -0.14 -2.35 17.26 2.25 0.04 -2.31 16 16 C -0.14 -2.17 9.80 -39.39 -0.39 -2.55 16 17 C -0.03 -0.42 6.31 -39.57 -0.25 -0.67 16 18 Cl -0.07 -0.96 28.95 -51.86 -1.50 -2.46 16 19 C -0.08 -1.44 9.38 -39.12 -0.37 -1.81 16 20 C 0.11 2.42 5.55 -67.93 -0.38 2.05 16 21 C -0.13 -2.77 8.08 -26.73 -0.22 -2.99 16 22 C -0.22 -4.36 10.39 -26.73 -0.28 -4.63 16 23 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 24 H 0.19 4.00 4.91 -52.48 -0.26 3.75 16 25 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.14 2.49 7.93 -52.48 -0.42 2.07 16 27 H 0.11 2.49 7.78 -51.93 -0.40 2.08 16 28 H 0.11 2.52 5.15 -51.93 -0.27 2.25 16 29 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 286.54 15.07 4.32 4.32 Total: -1.00 -25.24 286.54 -7.59 -32.83 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -2.52 Total: 7.58 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -3.28 Total: -8.20 kcal Atomic # 7 Polarization: -29.74 SS G_CDS: 0.30 Total: -29.44 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.09 Total: -15.13 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -25.24 -7.59 -32.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268105974.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.380 kcal (2) G-P(sol) polarization free energy of solvation -25.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds