Wall clock time and date at job start Tue Mar 31 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86799 * 120.00257 * 2 1 4 4 H 1.48502 * 109.47241 * 240.00133 * 3 2 1 5 5 H 1.48500 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47209 * 119.99901 * 3 2 1 7 7 C 1.39030 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00527 * 168.17296 * 7 2 1 9 9 N 1.36897 * 119.99891 * 348.16619 * 7 2 1 10 10 C 1.34775 * 120.00428 * 313.58106 * 9 7 2 11 11 O 1.21603 * 119.99729 * 3.35846 * 10 9 7 12 12 C 1.47585 * 120.00285 * 183.36797 * 10 9 7 13 13 C 1.39739 * 120.16195 * 317.44310 * 12 10 9 14 14 C 1.37837 * 119.89438 * 180.02562 * 13 12 10 15 15 C 1.38458 * 120.23652 * 0.02562 * 14 13 12 16 16 C 1.38323 * 120.33959 * 359.97438 * 15 14 13 17 17 Cl 1.73598 * 119.95146 * 179.97438 * 16 15 14 18 18 C 1.38410 * 120.09607 * 0.26864 * 16 15 14 19 19 F 1.35100 * 120.11794 * 179.73151 * 18 16 15 20 20 C 1.46505 * 119.99512 * 133.57588 * 9 7 2 21 21 C 1.52999 * 117.50253 * 2.26790 * 20 9 7 22 22 C 1.52991 * 117.50337 * 293.60282 * 20 9 7 23 23 H 0.97001 * 119.99734 * 5.02505 * 1 2 3 24 24 H 1.08000 * 120.05373 * 359.97438 * 13 12 10 25 25 H 1.08004 * 119.88206 * 179.97438 * 14 13 12 26 26 H 1.07999 * 119.83380 * 179.97438 * 15 14 13 27 27 H 1.09005 * 115.54419 * 147.93406 * 20 9 7 28 28 H 1.08999 * 117.49635 * 359.97438 * 21 20 9 29 29 H 1.08995 * 117.49771 * 145.01462 * 21 20 9 30 30 H 1.08993 * 117.50845 * 214.98355 * 22 20 9 31 31 H 1.09006 * 117.49491 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.1016 1.6963 -1.2125 5 1 1.2828 2.7464 0.0006 6 1 3.1015 1.6963 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0717 -1.2140 -0.1922 9 7 1.3461 -2.3771 0.2421 10 6 0.4807 -2.4617 1.2717 11 8 0.2422 -1.4795 1.9478 12 6 -0.1776 -3.7465 1.5788 13 6 -0.6751 -4.5450 0.5457 14 6 -1.2894 -5.7437 0.8389 15 6 -1.4157 -6.1592 2.1536 16 6 -0.9267 -5.3764 3.1838 17 17 -1.0911 -5.9068 4.8286 18 6 -0.3119 -4.1679 2.9056 19 9 0.1610 -3.4004 3.9119 20 6 1.5777 -3.5405 -0.6177 21 6 2.6110 -3.3974 -1.7370 22 6 1.1186 -3.4453 -2.0740 23 1 -0.4850 0.8368 -0.0736 24 1 -0.5793 -4.2232 -0.4808 25 1 -1.6743 -6.3605 0.0402 26 1 -1.8985 -7.0993 2.3759 27 1 1.4981 -4.5107 -0.1273 28 1 3.1182 -2.4375 -1.8339 29 1 3.2109 -4.2735 -1.9832 30 1 0.7372 -4.3528 -2.5420 31 1 0.6445 -2.5169 -2.3926 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268667156.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:22 Heat of formation + Delta-G solvation = -10.754644 kcal Electronic energy + Delta-G solvation = -20213.258923 eV Core-core repulsion = 16822.989365 eV Total energy + Delta-G solvation = -3390.269558 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.43122 -39.44070 -37.89131 -36.36009 -36.02427 -32.90227 -31.45350 -30.35914 -30.16819 -25.42596 -23.47124 -22.45464 -21.75000 -21.15791 -19.73034 -17.58305 -16.85275 -16.32238 -16.11266 -15.43769 -15.18450 -14.95448 -14.32746 -14.16121 -13.67246 -13.24834 -13.05147 -12.80089 -12.65378 -12.30419 -11.87458 -11.38943 -11.30323 -11.09179 -11.02130 -10.90411 -10.87397 -10.44167 -10.35783 -9.96645 -9.79507 -8.81620 -8.69001 -8.46825 -8.19581 -7.09566 -6.18686 -3.99687 1.10842 1.22849 2.11346 3.25348 3.32943 3.35142 3.49223 4.14848 4.20189 4.36818 4.67302 4.73131 4.93460 5.12164 5.16654 5.30327 5.41038 5.53859 5.70666 5.79430 5.84922 6.05208 6.12097 6.21247 6.34725 6.42262 6.49706 6.75969 6.90577 6.91317 7.52175 8.18056 8.92068 9.02312 9.50452 10.15035 10.88157 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.021658 B = 0.006320 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.543305 B = 4429.271257 C = 5294.281662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.342 4.342 8 H 0.083 0.917 9 N -0.413 5.413 10 C 0.509 3.491 11 O -0.506 6.506 12 C -0.116 4.116 13 C -0.070 4.070 14 C -0.129 4.129 15 C -0.088 4.088 16 C -0.083 4.083 17 Cl -0.062 7.062 18 C 0.143 3.857 19 F -0.113 7.113 20 C 0.063 3.937 21 C -0.177 4.177 22 C -0.199 4.199 23 H 0.267 0.733 24 H 0.149 0.851 25 H 0.137 0.863 26 H 0.138 0.862 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.598 -12.879 -0.803 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.146 4.146 3 Si 0.743 3.257 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.101 0.899 9 N -0.133 5.133 10 C 0.296 3.704 11 O -0.383 6.383 12 C -0.121 4.121 13 C -0.088 4.088 14 C -0.147 4.147 15 C -0.107 4.107 16 C -0.110 4.110 17 Cl -0.033 7.033 18 C 0.121 3.879 19 F -0.091 7.091 20 C -0.043 4.043 21 C -0.215 4.215 22 C -0.238 4.238 23 H 0.077 0.923 24 H 0.166 0.834 25 H 0.155 0.845 26 H 0.156 0.844 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.885 -12.204 -0.170 12.350 hybrid contribution 0.302 0.805 0.189 0.881 sum -1.582 -11.399 0.020 11.508 Atomic orbital electron populations 1.69823 1.06459 1.27782 1.41394 1.25393 0.95031 0.99545 0.94587 0.86199 0.79228 0.81585 0.78655 1.20149 1.21018 1.19786 1.18961 0.92281 0.82513 1.53101 0.89927 1.42586 1.39372 1.09058 1.22318 1.17470 0.84246 0.85993 0.82663 1.90694 1.61783 1.36124 1.49662 1.20769 1.01576 0.98650 0.91084 1.21706 0.94358 0.92776 1.00010 1.21069 1.00720 0.97128 0.95781 1.20914 0.99179 0.99398 0.91226 1.20834 1.07062 0.96028 0.87093 1.98355 1.96703 1.89835 1.18419 1.17399 0.97234 0.88435 0.84818 1.91571 1.85395 1.74049 1.58124 1.21931 1.04017 0.91707 0.86600 1.23127 0.92147 1.03175 1.03034 1.23322 0.97666 1.02738 1.00077 0.92317 0.83384 0.84527 0.84421 0.87523 0.87519 0.89740 0.89818 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.92 11.35 55.50 0.63 -23.29 16 2 C 0.07 1.82 4.59 -17.45 -0.08 1.74 16 3 Si 0.92 21.43 29.57 -169.99 -5.03 16.40 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.34 -9.10 8.01 -15.00 -0.12 -9.22 16 8 H 0.08 2.11 7.09 -52.48 -0.37 1.74 16 9 N -0.41 -10.19 2.82 -108.88 -0.31 -10.50 16 10 C 0.51 13.25 6.48 -12.45 -0.08 13.17 16 11 O -0.51 -15.46 13.89 5.27 0.07 -15.39 16 12 C -0.12 -2.42 5.21 -104.92 -0.55 -2.97 16 13 C -0.07 -1.15 7.60 -39.17 -0.30 -1.45 16 14 C -0.13 -1.64 10.03 -39.65 -0.40 -2.04 16 15 C -0.09 -1.13 9.82 -39.47 -0.39 -1.52 16 16 C -0.08 -1.32 6.32 -39.49 -0.25 -1.57 16 17 Cl -0.06 -0.89 28.61 -51.86 -1.48 -2.38 16 18 C 0.14 2.84 7.22 -38.91 -0.28 2.56 16 19 F -0.11 -2.52 15.88 2.25 0.04 -2.49 16 20 C 0.06 1.21 4.37 -67.93 -0.30 0.91 16 21 C -0.18 -3.00 9.81 -26.69 -0.26 -3.26 16 22 C -0.20 -3.38 9.32 -26.70 -0.25 -3.63 16 23 H 0.27 7.45 8.32 -40.82 -0.34 7.12 16 24 H 0.15 2.41 5.52 -52.49 -0.29 2.12 16 25 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 26 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.11 1.82 6.26 -51.93 -0.33 1.49 16 28 H 0.11 2.00 6.64 -51.93 -0.34 1.65 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 2.00 8.14 -51.93 -0.42 1.57 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -32.16 286.59 -7.59 -39.75 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -2.58 Total: 0.84 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -3.25 Total: -7.27 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.32 Total: -33.79 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.07 Total: -15.39 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.48 Total: -2.38 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.16 -7.59 -39.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268667156.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.999 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds