Wall clock time and date at job start Tue Mar 31 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31373 * 1 3 3 Si 1.86797 * 120.00115 * 2 1 4 4 H 1.48492 * 109.47472 * 240.00342 * 3 2 1 5 5 H 1.48500 * 109.47176 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46615 * 120.00150 * 3 2 1 7 7 C 1.39034 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00348 * 189.63866 * 7 2 1 9 9 N 1.36893 * 119.99820 * 9.63602 * 7 2 1 10 10 C 1.34781 * 120.00124 * 44.30424 * 9 7 2 11 11 O 1.21601 * 119.99939 * 4.57036 * 10 9 7 12 12 C 1.47610 * 120.00060 * 184.57154 * 10 9 7 13 13 C 1.39741 * 120.11697 * 318.82407 * 12 10 9 14 14 C 1.37820 * 119.89384 * 179.97438 * 13 12 10 15 15 C 1.38656 * 120.14151 * 0.02562 * 14 13 12 16 16 F 1.35096 * 119.87696 * 179.97438 * 15 14 13 17 17 C 1.38758 * 120.24064 * 359.97438 * 15 14 13 18 18 Cl 1.73598 * 119.94986 * 179.97438 * 17 15 14 19 19 C 1.37948 * 120.10195 * 0.02562 * 17 15 14 20 20 C 1.46504 * 119.99971 * 224.30291 * 9 7 2 21 21 C 1.52996 * 117.49968 * 5.60482 * 20 9 7 22 22 C 1.52999 * 60.00415 * 252.51474 * 21 20 9 23 23 H 0.96998 * 120.00452 * 4.99075 * 1 2 3 24 24 H 1.07996 * 120.04839 * 359.70282 * 13 12 10 25 25 H 1.07993 * 119.92620 * 180.02562 * 14 13 12 26 26 H 1.07995 * 120.07189 * 180.02562 * 19 17 15 27 27 H 1.09002 * 115.54967 * 151.32104 * 20 9 7 28 28 H 1.09002 * 117.49682 * 0.02562 * 21 20 9 29 29 H 1.08998 * 117.49842 * 145.01935 * 21 20 9 30 30 H 1.08995 * 117.49412 * 252.51400 * 22 21 20 31 31 H 1.08995 * 117.51998 * 107.48420 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1014 1.6965 -1.2125 5 1 1.2828 2.7464 0.0006 6 1 3.1015 1.6962 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0775 -1.2108 0.1561 9 7 1.3389 -2.3811 -0.1995 10 6 0.4090 -2.4714 -1.1709 11 8 0.2237 -1.5348 -1.9241 12 6 -0.3845 -3.7070 -1.3205 13 6 0.2292 -4.9551 -1.1853 14 6 -0.5162 -6.1059 -1.3254 15 6 -1.8729 -6.0274 -1.6006 16 9 -2.5984 -7.1589 -1.7373 17 6 -2.4882 -4.7911 -1.7360 18 17 -4.1871 -4.7017 -2.0812 19 6 -1.7517 -3.6329 -1.5978 20 6 1.6328 -3.5428 0.6434 21 6 2.6008 -3.3416 1.8110 22 6 3.0457 -4.1259 0.5750 23 1 -0.4851 0.8368 -0.0731 24 1 1.2868 -5.0179 -0.9758 25 1 -0.0425 -7.0707 -1.2206 26 1 -2.2311 -2.6709 -1.7028 27 1 0.8071 -4.2396 0.7880 28 1 3.0187 -2.3449 1.9523 29 1 2.4120 -3.9060 2.7242 30 1 3.1495 -5.2063 0.6751 31 1 3.7565 -3.6456 -0.0973 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269077556.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:39 Heat of formation + Delta-G solvation = -13.352983 kcal Electronic energy + Delta-G solvation = -19884.206495 eV Core-core repulsion = 16493.824265 eV Total energy + Delta-G solvation = -3390.382230 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.85161 -39.60450 -37.81743 -36.35992 -36.09812 -32.95039 -31.32396 -30.79644 -30.00758 -25.39018 -23.22420 -22.87929 -21.82536 -21.13560 -19.81741 -17.70858 -17.21612 -16.40018 -16.16746 -15.64416 -15.13900 -14.73203 -14.47893 -13.88965 -13.74651 -13.49817 -13.24747 -13.03335 -12.66620 -12.62286 -11.74174 -11.42944 -11.27973 -11.16670 -11.00833 -10.91913 -10.83060 -10.69342 -10.29076 -10.06908 -9.85750 -8.87293 -8.82477 -8.47741 -8.17148 -7.18941 -6.19264 -4.03675 1.01857 1.26268 2.12590 3.24184 3.31225 3.32147 3.44510 4.08105 4.19066 4.22882 4.63136 4.70765 4.81743 5.08734 5.20330 5.34258 5.43130 5.48795 5.64370 5.75538 5.81324 6.03359 6.10428 6.14347 6.22326 6.36842 6.59552 6.62016 6.81534 6.85907 7.48497 8.12292 8.90052 8.99434 9.47204 10.10848 10.85712 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.005874 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.803673 B = 4765.689730 C = 5809.050964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.062 3.938 3 Si 0.916 3.084 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.337 4.337 8 H 0.082 0.918 9 N -0.415 5.415 10 C 0.515 3.485 11 O -0.518 6.518 12 C -0.088 4.088 13 C -0.074 4.074 14 C -0.150 4.150 15 C 0.102 3.898 16 F -0.133 7.133 17 C -0.078 4.078 18 Cl -0.059 7.059 19 C -0.039 4.039 20 C 0.064 3.936 21 C -0.174 4.174 22 C -0.209 4.209 23 H 0.268 0.732 24 H 0.149 0.851 25 H 0.143 0.857 26 H 0.150 0.850 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 -11.092 0.451 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.148 4.148 3 Si 0.743 3.257 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.464 4.464 8 H 0.100 0.900 9 N -0.134 5.134 10 C 0.303 3.697 11 O -0.396 6.396 12 C -0.092 4.092 13 C -0.093 4.093 14 C -0.169 4.169 15 C 0.082 3.918 16 F -0.112 7.112 17 C -0.106 4.106 18 Cl -0.031 7.031 19 C -0.059 4.059 20 C -0.042 4.042 21 C -0.211 4.211 22 C -0.248 4.248 23 H 0.078 0.922 24 H 0.167 0.833 25 H 0.161 0.839 26 H 0.167 0.833 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.412 -10.469 0.082 10.564 hybrid contribution -0.011 0.525 0.060 0.529 sum -1.424 -9.944 0.143 10.046 Atomic orbital electron populations 1.69797 1.06396 1.28089 1.41897 1.25320 0.95056 0.99522 0.94941 0.86199 0.79199 0.81690 0.78598 1.19919 1.21008 1.20114 1.18910 0.91549 0.82524 1.53385 0.90034 1.42622 1.35876 1.08797 1.26121 1.17491 0.83661 0.85747 0.82795 1.90645 1.67372 1.38133 1.43404 1.20671 0.93709 0.95627 0.99195 1.21665 1.01238 0.90508 0.95886 1.20997 0.91284 1.00372 1.04279 1.17507 0.89859 0.80678 1.03805 1.91498 1.77525 1.48823 1.93316 1.20850 0.86548 0.93701 1.09471 1.98360 1.12447 1.98653 1.93596 1.21109 0.92753 0.97312 0.94692 1.22014 0.91795 0.93062 0.97347 1.23120 1.04060 1.02220 0.91721 1.23385 1.00233 0.98614 1.02556 0.92177 0.83307 0.83906 0.83257 0.87221 0.87382 0.89612 0.89478 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.61 11.25 55.50 0.62 -22.98 16 2 C 0.06 1.68 4.66 -17.45 -0.08 1.60 16 3 Si 0.92 20.93 29.57 -169.99 -5.03 15.90 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.34 -8.72 7.85 -15.00 -0.12 -8.83 16 8 H 0.08 2.02 7.32 -52.49 -0.38 1.63 16 9 N -0.41 -9.86 2.85 -108.87 -0.31 -10.17 16 10 C 0.52 12.70 6.45 -12.43 -0.08 12.62 16 11 O -0.52 -14.92 14.64 5.28 0.08 -14.84 16 12 C -0.09 -1.73 5.28 -104.97 -0.55 -2.28 16 13 C -0.07 -1.16 7.46 -39.17 -0.29 -1.45 16 14 C -0.15 -2.04 10.01 -39.58 -0.40 -2.43 16 15 C 0.10 1.53 7.28 -39.23 -0.29 1.25 16 16 F -0.13 -1.94 16.83 2.25 0.04 -1.90 16 17 C -0.08 -1.28 6.32 -39.50 -0.25 -1.53 16 18 Cl -0.06 -0.89 28.60 -51.86 -1.48 -2.38 16 19 C -0.04 -0.73 9.43 -39.15 -0.37 -1.10 16 20 C 0.06 1.19 4.39 -67.93 -0.30 0.89 16 21 C -0.17 -2.90 9.80 -26.73 -0.26 -3.16 16 22 C -0.21 -3.20 9.54 -26.73 -0.25 -3.46 16 23 H 0.27 7.38 8.32 -40.82 -0.34 7.04 16 24 H 0.15 2.15 5.55 -52.49 -0.29 1.86 16 25 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 26 H 0.15 2.97 8.06 -52.49 -0.42 2.54 16 27 H 0.11 1.87 5.87 -51.93 -0.30 1.57 16 28 H 0.11 2.01 6.79 -51.93 -0.35 1.66 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 287.91 15.07 4.34 4.34 Total: -1.00 -30.09 287.91 -7.56 -37.66 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -2.58 Total: 2.28 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -3.24 Total: -7.90 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.31 Total: -33.15 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.08 Total: -14.84 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.48 Total: -2.38 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.09 -7.56 -37.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269077556.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.305 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds