Wall clock time and date at job start Tue Mar 31 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31367 * 1 3 3 Si 1.86808 * 120.00050 * 2 1 4 4 H 1.48497 * 109.47139 * 275.89974 * 3 2 1 5 5 H 1.48501 * 109.46910 * 35.90332 * 3 2 1 6 6 H 1.48505 * 109.46934 * 155.89664 * 3 2 1 7 7 C 1.39039 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99771 * 346.94138 * 7 2 1 9 9 N 1.36877 * 120.00371 * 166.94370 * 7 2 1 10 10 C 1.34776 * 120.00127 * 313.90148 * 9 7 2 11 11 O 1.21596 * 119.99476 * 4.74817 * 10 9 7 12 12 C 1.47672 * 119.99998 * 184.74832 * 10 9 7 13 13 C 1.39698 * 120.12668 * 315.68396 * 12 10 9 14 14 C 1.37870 * 119.90774 * 180.02562 * 13 12 10 15 15 C 1.38496 * 120.16799 * 0.02562 * 14 13 12 16 16 Cl 1.73598 * 119.87542 * 180.02562 * 15 14 13 17 17 C 1.38718 * 120.25775 * 0.02562 * 15 14 13 18 18 F 1.35102 * 119.95964 * 179.97438 * 17 15 14 19 19 C 1.38121 * 120.08298 * 0.25296 * 17 15 14 20 20 C 1.46506 * 119.99941 * 133.90539 * 9 7 2 21 21 C 1.53002 * 117.49880 * 2.97500 * 20 9 7 22 22 C 1.52998 * 117.49453 * 294.35283 * 20 9 7 23 23 H 0.97003 * 119.99789 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.04451 * 0.02562 * 13 12 10 25 25 H 1.07994 * 119.91664 * 180.02562 * 14 13 12 26 26 H 1.07999 * 120.07690 * 179.69964 * 19 17 15 27 27 H 1.09001 * 115.54996 * 148.68470 * 20 9 7 28 28 H 1.08998 * 117.49998 * 0.02562 * 21 20 9 29 29 H 1.08997 * 117.49469 * 145.02280 * 21 20 9 30 30 H 1.09002 * 117.49770 * 214.97247 * 22 20 9 31 31 H 1.09000 * 117.50147 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.3706 2.1184 -1.3926 5 1 1.5131 2.6135 0.8210 6 1 3.6020 1.4074 0.5718 7 6 2.0089 -1.2041 -0.0005 8 1 1.4899 -2.1274 0.2104 9 7 3.3512 -1.2193 -0.2683 10 6 3.8384 -0.5172 -1.3105 11 8 3.1000 0.1977 -1.9603 12 6 5.2690 -0.6163 -1.6633 13 6 6.2427 -0.5709 -0.6626 14 6 7.5770 -0.6633 -0.9971 15 6 7.9544 -0.8005 -2.3226 16 17 9.6366 -0.9168 -2.7352 17 6 6.9933 -0.8453 -3.3219 18 9 7.3682 -0.9788 -4.6130 19 6 5.6539 -0.7479 -2.9992 20 6 4.2582 -1.9988 0.5779 21 6 3.6363 -2.8295 1.7023 22 6 4.4196 -1.5577 2.0340 23 1 -0.4850 0.8401 0.0004 24 1 5.9506 -0.4635 0.3716 25 1 8.3298 -0.6286 -0.2236 26 1 4.9060 -0.7779 -3.7778 27 1 5.1350 -2.4074 0.0756 28 1 2.5524 -2.7964 1.8121 29 1 4.1040 -3.7850 1.9397 30 1 5.4025 -1.6767 2.4899 31 1 3.8513 -0.6874 2.3623 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270789062.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:41 Heat of formation + Delta-G solvation = -31.123165 kcal Electronic energy + Delta-G solvation = -20014.602768 eV Core-core repulsion = 16623.449965 eV Total energy + Delta-G solvation = -3391.152803 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.11790 -41.58378 -39.54146 -38.18293 -37.59376 -35.01831 -33.61026 -32.22540 -31.78197 -27.44241 -24.96528 -24.13425 -23.36173 -22.76671 -21.43091 -19.78760 -18.43391 -17.96752 -17.69929 -17.38437 -17.23942 -16.87309 -16.16071 -15.76473 -15.17798 -15.06349 -15.00177 -14.71679 -14.52741 -14.06295 -13.66163 -13.50901 -12.99807 -12.87196 -12.58625 -12.46144 -12.20130 -12.06463 -12.01489 -11.62155 -11.24919 -10.92097 -10.61657 -10.18201 -9.82750 -9.47729 -8.48069 -6.30732 -0.48768 -0.07676 0.83724 1.16419 1.27428 1.47192 1.73149 2.22369 2.34638 2.52799 2.89512 2.93102 3.18473 3.49822 3.56246 3.88741 3.96752 4.03266 4.15957 4.30423 4.37423 4.59215 4.79329 4.83825 4.90726 4.97712 5.12481 5.24271 5.45554 5.48150 5.61417 5.81165 6.61654 6.73895 7.18761 7.67129 8.58146 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.023450 B = 0.005962 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.748285 B = 4695.223777 C = 5257.349377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.043 3.957 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.308 1.308 6 H -0.260 1.260 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.432 5.432 10 C 0.480 3.520 11 O -0.585 6.585 12 C -0.087 4.087 13 C -0.089 4.089 14 C -0.064 4.064 15 C -0.062 4.062 16 Cl -0.036 7.036 17 C 0.101 3.899 18 F -0.129 7.129 19 C -0.110 4.110 20 C 0.031 3.969 21 C -0.167 4.167 22 C -0.179 4.179 23 H 0.275 0.725 24 H 0.162 0.838 25 H 0.190 0.810 26 H 0.137 0.863 27 H 0.149 0.851 28 H 0.077 0.923 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.438 -3.910 1.981 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.162 4.162 3 Si 0.803 3.197 4 H -0.216 1.216 5 H -0.239 1.239 6 H -0.184 1.184 7 C -0.461 4.461 8 H 0.095 0.905 9 N -0.149 5.149 10 C 0.273 3.727 11 O -0.472 6.472 12 C -0.091 4.091 13 C -0.108 4.108 14 C -0.082 4.082 15 C -0.090 4.090 16 Cl -0.007 7.007 17 C 0.081 3.919 18 F -0.108 7.108 19 C -0.130 4.130 20 C -0.072 4.072 21 C -0.204 4.204 22 C -0.217 4.217 23 H 0.084 0.916 24 H 0.179 0.821 25 H 0.208 0.792 26 H 0.155 0.845 27 H 0.166 0.834 28 H 0.095 0.905 29 H 0.148 0.852 30 H 0.160 0.840 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.041 -3.540 1.607 20.414 hybrid contribution -0.627 0.830 -0.730 1.271 sum 19.414 -2.710 0.877 19.622 Atomic orbital electron populations 1.69751 1.07928 1.28923 1.47695 1.26048 0.95554 1.02193 0.92408 0.85285 0.78936 0.79261 0.76259 1.21617 1.23865 1.18408 1.18682 0.82397 0.94300 1.50763 0.90453 1.43177 1.06316 1.42378 1.23073 1.18847 0.88225 0.84433 0.81232 1.90558 1.60245 1.42111 1.54267 1.19882 0.93169 1.01821 0.94236 1.21780 0.91477 0.97324 1.00222 1.21247 0.96332 0.96707 0.93886 1.21251 0.85926 1.07368 0.94505 1.98391 1.12081 1.96341 1.93925 1.17160 0.91600 1.04503 0.78649 1.91529 1.91773 1.93265 1.34231 1.21021 0.94415 1.00910 0.96650 1.22404 0.96526 1.01105 0.87215 1.23214 1.00306 0.96319 1.00588 1.23443 1.03201 0.98374 0.96685 0.91566 0.82071 0.79245 0.84474 0.83425 0.90465 0.85178 0.83985 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.94 13.95 21.68 0.30 -55.64 16 2 C 0.04 2.52 5.02 84.95 0.43 2.95 16 3 Si 0.97 51.18 24.43 68.60 1.68 52.86 16 4 H -0.29 -16.56 6.35 99.48 0.63 -15.93 16 5 H -0.31 -15.74 7.11 99.48 0.71 -15.04 16 6 H -0.26 -12.40 7.02 99.48 0.70 -11.70 16 7 C -0.33 -18.39 8.53 84.10 0.72 -17.67 16 8 H 0.08 4.53 7.25 -2.91 -0.02 4.51 16 9 N -0.43 -19.61 2.46 -616.55 -1.52 -21.13 16 10 C 0.48 22.29 5.56 86.74 0.48 22.77 16 11 O -0.58 -32.78 12.06 -4.02 -0.05 -32.83 16 12 C -0.09 -3.03 5.18 -20.09 -0.10 -3.14 16 13 C -0.09 -2.24 7.58 22.54 0.17 -2.07 16 14 C -0.06 -1.19 9.81 22.24 0.22 -0.98 16 15 C -0.06 -1.39 6.33 22.45 0.14 -1.25 16 16 Cl -0.04 -0.70 28.60 -2.72 -0.08 -0.78 16 17 C 0.10 2.77 7.27 22.36 0.16 2.93 16 18 F -0.13 -3.60 16.82 44.97 0.76 -2.84 16 19 C -0.11 -3.57 9.66 22.58 0.22 -3.35 16 20 C 0.03 1.00 4.41 44.99 0.20 1.20 16 21 C -0.17 -4.88 9.81 30.60 0.30 -4.58 16 22 C -0.18 -4.82 9.46 30.59 0.29 -4.53 16 23 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 24 H 0.16 3.71 5.74 -2.91 -0.02 3.69 16 25 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 26 H 0.14 4.74 8.06 -2.91 -0.02 4.71 16 27 H 0.15 3.78 6.19 -2.39 -0.01 3.76 16 28 H 0.08 2.85 6.62 -2.39 -0.02 2.84 16 29 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -71.92 282.06 5.40 -66.52 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: 1.09 Total: 1.56 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 3.22 Total: -7.72 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -1.22 Total: -76.77 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.05 Total: -32.83 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.76 Total: -2.84 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 1.68 Total: 52.86 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -71.92 5.40 -66.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270789062.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.395 kcal (2) G-P(sol) polarization free energy of solvation -71.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds