Wall clock time and date at job start Tue Mar 31 2020 05:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99957 * 2 1 4 4 H 1.48497 * 109.47187 * 239.99750 * 3 2 1 5 5 H 1.48499 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47265 * 120.00001 * 3 2 1 7 7 C 1.38802 * 120.00415 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00365 * 180.02562 * 7 2 1 9 9 S 1.76209 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99861 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47048 * 180.02562 * 10 9 7 12 12 N 1.31124 * 126.55257 * 90.00126 * 11 10 9 13 13 C 1.34497 * 105.61758 * 180.02562 * 12 11 10 14 14 C 1.50695 * 126.28785 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47318 * 89.99900 * 14 13 12 16 16 C 1.33644 * 122.75087 * 125.00071 * 15 14 13 17 17 S 1.76190 * 107.92515 * 180.02562 * 16 15 14 18 18 C 1.70976 * 90.28400 * 359.97438 * 17 16 15 19 19 N 1.29026 * 110.16782 * 359.97438 * 18 17 16 20 20 N 1.29947 * 107.42260 * 0.23894 * 13 12 11 21 21 O 1.21303 * 110.25256 * 359.58533 * 20 13 12 22 22 H 0.96995 * 119.99884 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46847 * 60.00129 * 10 9 7 24 24 H 1.08999 * 109.47409 * 300.00248 * 10 9 7 25 25 H 1.08999 * 109.47298 * 329.99326 * 14 13 12 26 26 H 1.09005 * 109.47222 * 210.00173 * 14 13 12 27 27 H 1.08002 * 126.03295 * 359.73123 * 16 15 14 28 28 H 1.08003 * 124.91681 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 7 1.7140 -6.0337 -1.0538 13 6 1.2728 -7.2101 -0.5737 14 6 0.8280 -8.3961 -1.3901 15 6 2.0100 -9.2904 -1.6622 16 6 2.0213 -10.5893 -1.3482 17 16 3.5805 -11.2510 -1.8334 18 6 4.0619 -9.7155 -2.4110 19 7 3.1169 -8.8558 -2.2303 20 7 1.2951 -7.1340 0.7233 21 8 1.7075 -6.0482 1.0732 22 1 -0.4850 0.8400 -0.0004 23 1 3.1245 -3.7313 0.8905 24 1 3.1246 -3.7314 -0.8894 25 1 0.4088 -8.0502 -2.3349 26 1 0.0703 -8.9530 -0.8388 27 1 1.2185 -11.1357 -0.8756 28 1 5.0183 -9.4969 -2.8627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273836671.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:44 Heat of formation + Delta-G solvation = 111.479159 kcal Electronic energy + Delta-G solvation = -16368.844954 eV Core-core repulsion = 13448.592391 eV Total energy + Delta-G solvation = -2920.252563 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.019 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.17257 -40.08917 -35.73908 -33.65354 -32.54174 -31.70353 -28.64548 -28.14627 -25.60704 -25.21111 -23.26097 -21.51816 -19.84729 -18.40781 -17.89444 -17.64990 -16.88963 -16.01388 -15.08966 -14.89549 -14.66931 -14.25695 -14.03884 -13.65971 -13.53882 -13.01305 -12.87663 -12.68835 -11.90316 -11.74803 -11.23744 -11.14222 -11.08437 -10.85066 -10.60402 -10.20932 -9.85487 -9.73707 -9.37423 -9.15369 -9.13747 -8.51594 -6.70734 -6.33367 -4.07652 0.44159 1.10896 1.38300 1.49472 2.41417 2.59064 3.11220 3.20373 3.23963 3.26498 3.47084 3.90212 3.95057 4.09740 4.29848 4.75415 4.96328 5.01875 5.04328 5.14568 5.31161 5.35732 5.62345 5.75127 5.82211 6.01756 6.20852 6.37248 7.49354 7.50529 8.25139 8.52951 9.12427 10.74588 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.044628 B = 0.003119 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.253710 B = 8976.245525 C = 9259.755343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.924 3.076 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.080 0.920 9 S -0.082 6.082 10 C -0.041 4.041 11 C 0.225 3.775 12 N -0.465 5.465 13 C 0.175 3.825 14 C 0.050 3.950 15 C 0.071 3.929 16 C -0.246 4.246 17 S 0.111 5.889 18 C 0.026 3.974 19 N -0.451 5.451 20 N -0.393 5.393 21 O 0.076 5.924 22 H 0.271 0.729 23 H 0.101 0.899 24 H 0.110 0.890 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.181 0.819 28 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.803 -20.596 -3.075 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.750 3.250 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.674 4.674 8 H 0.098 0.902 9 S 0.144 5.856 10 C -0.190 4.190 11 C 0.004 3.996 12 N -0.199 5.199 13 C -0.099 4.099 14 C 0.008 3.992 15 C -0.062 4.062 16 C -0.385 4.385 17 S 0.364 5.636 18 C -0.273 4.273 19 N -0.164 5.164 20 N -0.102 5.102 21 O 0.018 5.982 22 H 0.081 0.919 23 H 0.119 0.881 24 H 0.129 0.871 25 H 0.133 0.867 26 H 0.126 0.874 27 H 0.198 0.802 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.829 -21.853 -3.132 22.598 hybrid contribution 1.240 1.945 0.183 2.314 sum 6.069 -19.907 -2.949 21.020 Atomic orbital electron populations 1.69989 1.06019 1.27902 1.46341 1.25024 0.95121 0.99209 0.94164 0.86128 0.79177 0.80688 0.78999 1.19748 1.20761 1.19742 1.22672 0.94846 0.90096 1.59791 0.90227 1.85169 1.05311 0.98192 1.96954 1.21954 1.04311 0.85889 1.06858 1.28210 0.94427 0.96784 0.80165 1.71943 1.17716 1.01946 1.28268 1.25224 1.00793 0.95602 0.88262 1.18367 0.92784 0.88265 0.99741 1.19989 0.94749 0.91810 0.99630 1.26867 1.02428 0.98337 1.10906 1.84004 1.09026 1.15668 1.54941 1.28495 1.03071 0.91744 1.03948 1.66133 1.00303 1.35564 1.14413 1.74546 1.19029 1.01161 1.15512 1.85273 1.59042 1.18048 1.35876 0.91929 0.88060 0.87137 0.86728 0.87398 0.80182 0.78275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.13 13.22 55.49 0.73 -24.40 15 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 15 3 Si 0.92 20.72 29.55 -169.99 -5.02 15.69 15 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.53 -14.29 9.50 30.94 0.29 -13.99 15 8 H 0.08 2.04 7.80 -52.49 -0.41 1.63 15 9 S -0.08 -2.08 21.42 -107.50 -2.30 -4.39 15 10 C -0.04 -0.82 6.30 36.00 0.23 -0.60 15 11 C 0.22 4.39 7.77 -13.06 -0.10 4.29 15 12 N -0.46 -9.07 11.55 -9.87 -0.11 -9.18 15 13 C 0.17 3.00 7.35 -156.37 -1.15 1.85 15 14 C 0.05 0.63 6.34 -29.04 -0.18 0.44 15 15 C 0.07 0.88 6.06 -84.22 -0.51 0.37 15 16 C -0.25 -2.32 11.07 29.12 0.32 -2.00 15 17 S 0.11 0.89 23.22 -107.50 -2.50 -1.61 15 18 C 0.03 0.26 12.23 51.58 0.63 0.89 15 19 N -0.45 -6.14 10.39 -11.90 -0.12 -6.26 15 20 N -0.39 -7.14 12.16 30.90 0.38 -6.76 15 21 O 0.08 1.44 11.31 18.08 0.20 1.65 15 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 23 H 0.10 1.82 8.14 -51.92 -0.42 1.40 15 24 H 0.11 2.12 8.14 -51.92 -0.42 1.70 15 25 H 0.11 1.35 8.14 -51.93 -0.42 0.93 15 26 H 0.11 1.05 8.03 -51.93 -0.42 0.63 15 27 H 0.18 1.20 8.06 -52.49 -0.42 0.78 15 28 H 0.20 1.35 8.06 -52.48 -0.42 0.93 15 LS Contribution 290.94 15.07 4.38 4.38 Total: -1.00 -32.65 290.94 -7.00 -39.65 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -2.07 Total: -1.98 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.57 Total: -6.80 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.87 Total: -46.60 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.20 Total: 1.65 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -4.80 Total: -5.99 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.65 -7.00 -39.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273836671.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.130 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds