Wall clock time and date at job start Tue Mar 31 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48505 * 109.47216 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46975 * 120.00108 * 3 2 1 6 6 H 1.48499 * 109.47526 * 240.00270 * 3 2 1 7 7 C 1.40042 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00378 * 4.67208 * 7 2 1 9 9 C 1.46373 * 119.99893 * 184.67122 * 7 2 1 10 10 O 1.21686 * 120.00338 * 6.24667 * 9 7 2 11 11 N 1.34786 * 119.99966 * 186.24264 * 9 7 2 12 12 C 1.46503 * 119.99926 * 179.97438 * 11 9 7 13 13 H 1.08996 * 115.54901 * 9.33354 * 12 11 9 14 14 C 1.53000 * 117.49936 * 223.62697 * 12 11 9 15 15 C 1.52996 * 117.49664 * 155.00248 * 12 11 9 16 16 H 1.09002 * 117.50020 * 0.02562 * 15 12 11 17 17 C 1.50694 * 117.49871 * 214.97860 * 15 12 11 18 18 C 1.38268 * 119.97559 * 119.99800 * 17 15 12 19 19 C 1.38216 * 120.06092 * 179.97438 * 18 17 15 20 20 C 1.38319 * 120.01410 * 0.04175 * 19 18 17 21 21 Cl 1.73600 * 120.02333 * 179.97438 * 20 19 18 22 22 C 1.38552 * 119.94979 * 359.97438 * 20 19 18 23 23 F 1.35105 * 120.02837 * 180.02562 * 22 20 19 24 24 C 1.38196 * 119.97794 * 299.72785 * 17 15 12 25 25 H 0.96993 * 120.00036 * 174.89669 * 1 2 3 26 26 H 0.96996 * 119.99987 * 0.02562 * 11 9 7 27 27 H 1.09004 * 117.49471 * 359.97438 * 14 12 11 28 28 H 1.08990 * 117.50290 * 145.02427 * 14 12 11 29 29 H 1.07995 * 119.96886 * 359.97438 * 18 17 15 30 30 H 1.07996 * 119.99389 * 180.02562 * 19 18 17 31 31 H 1.08003 * 120.00372 * 0.02562 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0945 1.6964 1.2125 6 1 3.0944 1.6966 -1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 1.4697 -2.1466 -0.0771 9 6 3.4670 -1.2149 0.1027 10 8 4.0644 -0.1739 0.3030 11 7 4.1499 -2.3701 -0.0241 12 6 5.6113 -2.3721 0.0787 13 1 6.0603 -1.4371 0.4137 14 6 6.3901 -3.2046 -0.9417 15 6 6.2872 -3.6750 0.5106 16 1 5.6447 -4.5307 0.7178 17 6 7.5232 -3.5673 1.3659 18 6 7.5436 -4.1376 2.6254 19 6 8.6764 -4.0404 3.4112 20 6 9.7910 -3.3714 2.9386 21 17 11.2138 -3.2485 3.9256 22 6 9.7710 -2.7994 1.6768 23 9 10.8590 -2.1460 1.2134 24 6 8.6374 -2.9034 0.8889 25 1 -0.4850 -0.8366 -0.0747 26 1 3.6738 -3.1999 -0.1840 27 1 5.8150 -3.7511 -1.6893 28 1 7.3516 -2.8174 -1.2784 29 1 6.6735 -4.6595 2.9953 30 1 8.6913 -4.4866 4.3945 31 1 8.6221 -2.4616 -0.0965 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280623496.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:44 Heat of formation + Delta-G solvation = -59.963458 kcal Electronic energy + Delta-G solvation = -18736.513691 eV Core-core repulsion = 15344.110279 eV Total energy + Delta-G solvation = -3392.403412 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.12111 -39.89817 -38.24765 -36.98501 -36.18060 -32.98124 -32.24407 -30.89894 -30.13879 -26.31547 -24.32863 -22.96750 -21.83608 -20.73444 -19.93402 -18.24147 -17.70904 -16.84182 -16.54000 -15.95142 -15.65864 -15.60266 -14.50142 -14.30165 -13.78488 -13.67999 -13.40372 -13.25030 -12.93217 -12.77254 -12.25297 -12.11784 -12.05626 -11.82674 -11.51233 -11.14545 -10.98831 -10.41098 -10.37890 -10.21930 -9.29130 -9.19782 -9.04062 -8.77238 -8.04458 -7.86141 -7.07839 -5.02845 0.71244 0.86460 1.78172 3.11793 3.51291 3.64723 3.82413 3.94165 4.03061 4.15283 4.30928 4.41459 4.51207 4.63139 4.80182 4.93050 4.98213 5.12453 5.21316 5.41830 5.48641 5.55133 5.68320 5.76503 5.86356 6.05118 6.18233 6.29894 6.46923 7.35399 7.53234 7.65742 7.99928 8.74233 8.90962 9.92777 10.25422 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.028144 B = 0.003511 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.629468 B = 7973.769644 C = 8179.069040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.061 3.939 3 Si 1.129 2.871 4 H -0.321 1.321 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.596 4.596 8 H 0.071 0.929 9 C 0.552 3.448 10 O -0.614 6.614 11 N -0.725 5.725 12 C 0.131 3.869 13 H 0.134 0.866 14 C -0.194 4.194 15 C -0.152 4.152 16 H 0.118 0.882 17 C 0.000 4.000 18 C -0.113 4.113 19 C -0.079 4.079 20 C -0.085 4.085 21 Cl -0.058 7.058 22 C 0.115 3.885 23 F -0.128 7.128 24 C -0.147 4.147 25 H 0.278 0.722 26 H 0.390 0.610 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.007 -11.000 3.822 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.157 4.157 3 Si 0.962 3.038 4 H -0.253 1.253 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.632 4.632 8 H 0.089 0.911 9 C 0.362 3.638 10 O -0.507 6.507 11 N -0.372 5.372 12 C 0.022 3.978 13 H 0.152 0.848 14 C -0.233 4.233 15 C -0.172 4.172 16 H 0.136 0.864 17 C -0.001 4.001 18 C -0.131 4.131 19 C -0.097 4.097 20 C -0.113 4.113 21 Cl -0.029 7.029 22 C 0.095 3.905 23 F -0.106 7.106 24 C -0.165 4.165 25 H 0.089 0.911 26 H 0.223 0.777 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 17.291 -8.693 4.097 19.782 hybrid contribution 0.263 -2.434 -0.146 2.453 sum 17.553 -11.127 3.950 21.155 Atomic orbital electron populations 1.70654 1.07599 1.32079 1.35312 1.27189 0.95313 1.05021 0.88196 0.82393 0.71480 0.70731 0.79223 1.25272 1.20700 1.21743 1.22036 0.89659 0.96451 1.55018 0.91075 1.18497 0.88622 0.81165 0.75528 1.90160 1.70563 1.31139 1.58858 1.45338 1.02977 1.11222 1.77705 1.21501 0.83441 0.94065 0.98789 0.84821 1.23627 1.03065 1.05317 0.91336 1.21663 0.97317 1.01946 0.96273 0.86364 1.19093 0.93031 0.94157 0.93811 1.21033 0.98097 1.00612 0.93391 1.20937 0.90811 0.97441 1.00528 1.20953 0.91553 1.06137 0.92626 1.98376 1.38180 1.97138 1.69175 1.17339 0.84848 0.96375 0.91975 1.91539 1.52082 1.78502 1.88526 1.21078 0.91568 1.02621 1.01280 0.91111 0.77689 0.88082 0.88201 0.84232 0.83952 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.50 13.64 55.55 0.76 -22.75 16 2 C 0.06 1.72 5.52 -17.37 -0.10 1.62 16 3 Si 1.13 29.38 25.99 -169.99 -4.42 24.96 16 4 H -0.32 -8.05 7.11 56.52 0.40 -7.65 16 5 H -0.28 -7.52 6.78 56.52 0.38 -7.13 16 6 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 7 C -0.60 -16.30 9.96 -35.64 -0.36 -16.66 16 8 H 0.07 1.90 8.05 -52.49 -0.42 1.48 16 9 C 0.55 14.13 7.57 -12.98 -0.10 14.04 16 10 O -0.61 -17.16 11.64 5.20 0.06 -17.10 16 11 N -0.72 -14.35 5.56 -55.22 -0.31 -14.66 16 12 C 0.13 2.16 6.07 -67.93 -0.41 1.74 16 13 H 0.13 2.49 7.40 -51.93 -0.38 2.11 16 14 C -0.19 -2.44 9.79 -26.73 -0.26 -2.70 16 15 C -0.15 -1.88 5.97 -91.77 -0.55 -2.43 16 16 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 17 C 0.00 0.00 5.61 -104.63 -0.59 -0.59 16 18 C -0.11 -1.17 9.73 -39.58 -0.39 -1.56 16 19 C -0.08 -0.78 9.83 -39.56 -0.39 -1.17 16 20 C -0.09 -0.97 6.33 -39.44 -0.25 -1.22 16 21 Cl -0.06 -0.62 28.62 -51.86 -1.48 -2.11 16 22 C 0.11 1.41 7.28 -39.39 -0.29 1.13 16 23 F -0.13 -1.66 16.84 2.25 0.04 -1.62 16 24 C -0.15 -1.74 9.28 -39.52 -0.37 -2.11 16 25 H 0.28 7.53 8.72 -40.82 -0.36 7.18 16 26 H 0.39 6.76 8.81 -40.82 -0.36 6.40 16 27 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.10 1.11 6.17 -51.93 -0.32 0.79 16 29 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.15 1.60 6.01 -52.48 -0.32 1.28 16 LS Contribution 293.77 15.07 4.43 4.43 Total: -1.00 -30.72 293.77 -7.62 -38.34 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -2.66 Total: 0.40 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -4.03 Total: -9.90 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.45 Total: -37.40 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.06 Total: -17.10 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 29.38 SS G_CDS: -4.42 Total: 24.96 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.72 -7.62 -38.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280623496.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.620 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds