Wall clock time and date at job start Tue Mar 31 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48505 * 109.47216 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46975 * 120.00108 * 3 2 1 6 6 H 1.48499 * 109.47526 * 240.00270 * 3 2 1 7 7 C 1.40042 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00378 * 4.67208 * 7 2 1 9 9 C 1.46373 * 119.99893 * 184.67122 * 7 2 1 10 10 O 1.21686 * 120.00338 * 6.24667 * 9 7 2 11 11 N 1.34786 * 119.99966 * 186.24264 * 9 7 2 12 12 C 1.46503 * 119.99926 * 179.97438 * 11 9 7 13 13 H 1.08996 * 115.54901 * 9.33354 * 12 11 9 14 14 C 1.53000 * 117.49936 * 223.62697 * 12 11 9 15 15 C 1.52996 * 117.49664 * 155.00248 * 12 11 9 16 16 H 1.09002 * 117.50020 * 0.02562 * 15 12 11 17 17 C 1.50694 * 117.49871 * 214.97860 * 15 12 11 18 18 C 1.38268 * 119.97559 * 119.99800 * 17 15 12 19 19 C 1.38216 * 120.06092 * 179.97438 * 18 17 15 20 20 C 1.38319 * 120.01410 * 0.04175 * 19 18 17 21 21 Cl 1.73600 * 120.02333 * 179.97438 * 20 19 18 22 22 C 1.38552 * 119.94979 * 359.97438 * 20 19 18 23 23 F 1.35105 * 120.02837 * 180.02562 * 22 20 19 24 24 C 1.38196 * 119.97794 * 299.72785 * 17 15 12 25 25 H 0.96993 * 120.00036 * 174.89669 * 1 2 3 26 26 H 0.96996 * 119.99987 * 0.02562 * 11 9 7 27 27 H 1.09004 * 117.49471 * 359.97438 * 14 12 11 28 28 H 1.08990 * 117.50290 * 145.02427 * 14 12 11 29 29 H 1.07995 * 119.96886 * 359.97438 * 18 17 15 30 30 H 1.07996 * 119.99389 * 180.02562 * 19 18 17 31 31 H 1.08003 * 120.00372 * 0.02562 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0945 1.6964 1.2125 6 1 3.0944 1.6966 -1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 1.4697 -2.1466 -0.0771 9 6 3.4670 -1.2149 0.1027 10 8 4.0644 -0.1739 0.3030 11 7 4.1499 -2.3701 -0.0241 12 6 5.6113 -2.3721 0.0787 13 1 6.0603 -1.4371 0.4137 14 6 6.3901 -3.2046 -0.9417 15 6 6.2872 -3.6750 0.5106 16 1 5.6447 -4.5307 0.7178 17 6 7.5232 -3.5673 1.3659 18 6 7.5436 -4.1376 2.6254 19 6 8.6764 -4.0404 3.4112 20 6 9.7910 -3.3714 2.9386 21 17 11.2138 -3.2485 3.9256 22 6 9.7710 -2.7994 1.6768 23 9 10.8590 -2.1460 1.2134 24 6 8.6374 -2.9034 0.8889 25 1 -0.4850 -0.8366 -0.0747 26 1 3.6738 -3.1999 -0.1840 27 1 5.8150 -3.7511 -1.6893 28 1 7.3516 -2.8174 -1.2784 29 1 6.6735 -4.6595 2.9953 30 1 8.6913 -4.4866 4.3945 31 1 8.6221 -2.4616 -0.0965 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280623496.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:44 Heat of formation + Delta-G solvation = -78.851681 kcal Electronic energy + Delta-G solvation = -18737.332746 eV Core-core repulsion = 15344.110279 eV Total energy + Delta-G solvation = -3393.222467 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.07015 -40.91706 -39.82616 -38.14906 -37.30544 -35.10237 -33.78879 -31.77131 -31.19065 -28.31377 -25.25362 -23.92029 -23.21844 -21.73278 -21.65761 -20.15669 -18.78429 -17.81774 -17.47291 -17.31892 -17.11266 -16.84528 -15.90325 -15.61983 -15.27971 -15.10274 -14.93489 -14.45770 -14.27015 -14.12888 -13.83850 -13.24193 -13.01506 -12.90605 -12.67038 -12.42598 -12.36652 -12.01481 -11.95881 -11.46648 -11.34592 -11.18944 -10.13247 -10.06462 -9.83505 -9.28500 -9.20897 -7.15191 -0.18594 0.01619 0.92180 1.42616 1.55809 1.97154 2.11918 2.26786 2.39787 2.72499 2.94875 3.02125 3.32991 3.51577 3.63354 3.79337 3.94726 4.09518 4.11141 4.28843 4.51004 4.61948 4.80261 4.90929 4.91757 4.97133 5.13599 5.38826 5.46652 5.52187 5.61806 5.86552 6.01198 6.62678 7.12437 7.97481 8.11251 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.028144 B = 0.003511 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.629468 B = 7973.769644 C = 8179.069040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.030 3.970 3 Si 1.160 2.840 4 H -0.308 1.308 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.614 4.614 8 H 0.070 0.930 9 C 0.552 3.448 10 O -0.641 6.641 11 N -0.711 5.711 12 C 0.085 3.915 13 H 0.106 0.894 14 C -0.172 4.172 15 C -0.117 4.117 16 H 0.139 0.861 17 C -0.017 4.017 18 C -0.107 4.107 19 C -0.075 4.075 20 C -0.090 4.090 21 Cl -0.055 7.055 22 C 0.094 3.906 23 F -0.137 7.137 24 C -0.149 4.149 25 H 0.279 0.721 26 H 0.404 0.596 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.163 0.837 30 H 0.169 0.831 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.009 -12.708 4.147 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.185 4.185 3 Si 0.992 3.008 4 H -0.239 1.239 5 H -0.225 1.225 6 H -0.222 1.222 7 C -0.650 4.650 8 H 0.088 0.912 9 C 0.359 3.641 10 O -0.536 6.536 11 N -0.359 5.359 12 C -0.023 4.023 13 H 0.124 0.876 14 C -0.210 4.210 15 C -0.137 4.137 16 H 0.157 0.843 17 C -0.018 4.018 18 C -0.125 4.125 19 C -0.093 4.093 20 C -0.118 4.118 21 Cl -0.026 7.026 22 C 0.074 3.926 23 F -0.116 7.116 24 C -0.168 4.168 25 H 0.090 0.910 26 H 0.239 0.761 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.181 0.819 30 H 0.187 0.813 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 18.309 -10.448 4.411 21.537 hybrid contribution 0.088 -2.005 -0.202 2.017 sum 18.397 -12.454 4.209 22.611 Atomic orbital electron populations 1.70657 1.07815 1.32271 1.36839 1.27764 0.95698 1.06757 0.88301 0.81955 0.70725 0.69990 0.78126 1.23866 1.22456 1.22190 1.22219 0.91069 0.96247 1.55499 0.91163 1.18339 0.88377 0.82309 0.75115 1.90134 1.71042 1.32635 1.59806 1.44929 1.04673 1.09975 1.76308 1.21534 0.81373 0.95394 1.03958 0.87597 1.23717 1.02668 1.02908 0.91751 1.21636 0.96589 0.99398 0.96071 0.84289 1.19158 0.92752 0.95279 0.94619 1.21341 0.98874 0.99653 0.92606 1.21248 0.89947 0.96626 1.01497 1.21174 0.92182 1.06004 0.92418 1.98378 1.38150 1.97121 1.68937 1.17531 0.84958 0.97346 0.92727 1.91512 1.52498 1.78837 1.88713 1.21178 0.91611 1.02429 1.01598 0.91026 0.76140 0.86751 0.86723 0.81944 0.81344 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.12 13.64 21.83 0.30 -47.82 16 2 C 0.03 1.67 5.52 85.30 0.47 2.14 16 3 Si 1.16 60.11 25.99 68.60 1.78 61.89 16 4 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 5 H -0.30 -16.02 6.78 99.48 0.67 -15.34 16 6 H -0.29 -15.26 7.11 99.48 0.71 -14.55 16 7 C -0.61 -33.61 9.96 24.83 0.25 -33.36 16 8 H 0.07 3.76 8.05 -2.91 -0.02 3.73 16 9 C 0.55 28.12 7.57 86.36 0.65 28.77 16 10 O -0.64 -36.03 11.64 -4.30 -0.05 -36.08 16 11 N -0.71 -27.29 5.56 -446.82 -2.49 -29.77 16 12 C 0.08 2.66 6.07 44.99 0.27 2.94 16 13 H 0.11 3.96 7.40 -2.39 -0.02 3.94 16 14 C -0.17 -3.83 9.79 30.60 0.30 -3.53 16 15 C -0.12 -2.54 5.97 -11.54 -0.07 -2.61 16 16 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 17 C -0.02 -0.37 5.61 -19.87 -0.11 -0.48 16 18 C -0.11 -1.86 9.73 22.27 0.22 -1.64 16 19 C -0.07 -1.27 9.83 22.28 0.22 -1.05 16 20 C -0.09 -1.89 6.33 22.36 0.14 -1.75 16 21 Cl -0.05 -1.10 28.62 -2.72 -0.08 -1.18 16 22 C 0.09 2.21 7.28 22.39 0.16 2.37 16 23 F -0.14 -3.48 16.84 44.97 0.76 -2.72 16 24 C -0.15 -3.30 9.28 22.31 0.21 -3.10 16 25 H 0.28 15.20 8.72 -92.71 -0.81 14.39 16 26 H 0.40 13.21 8.81 -92.71 -0.82 12.39 16 27 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.11 2.23 6.17 -2.39 -0.01 2.21 16 29 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.15 3.08 6.01 -2.91 -0.02 3.06 16 Total: -1.00 -66.01 293.77 3.24 -62.77 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 0.30 Total: 4.21 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 2.71 Total: -11.30 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -2.19 Total: -77.59 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.05 Total: -36.08 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.76 Total: -2.72 kcal Atomic # 14 Polarization: 60.11 SS G_CDS: 1.78 Total: 61.89 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -66.01 3.24 -62.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280623496.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.084 kcal (2) G-P(sol) polarization free energy of solvation -66.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds