Wall clock time and date at job start Tue Mar 31 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99892 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00083 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 N 1.31131 * 126.55026 * 90.00114 * 11 10 9 13 13 C 1.34498 * 105.61481 * 180.02562 * 12 11 10 14 14 C 1.50699 * 126.28399 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47188 * 89.99898 * 14 13 12 16 16 C 1.33638 * 126.04016 * 90.00071 * 15 14 13 17 17 N 1.31781 * 114.50250 * 180.02562 * 16 15 14 18 18 C 1.29032 * 117.12387 * 359.97438 * 17 16 15 19 19 S 1.70973 * 110.16494 * 359.72657 * 18 17 16 20 20 N 1.29946 * 107.42265 * 359.97438 * 13 12 11 21 21 O 1.21300 * 110.25269 * 359.70508 * 20 13 12 22 22 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 24 24 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 25 25 H 1.09006 * 109.46397 * 209.99544 * 14 13 12 26 26 H 1.08997 * 109.47347 * 329.99239 * 14 13 12 27 27 H 1.08002 * 122.75129 * 359.97438 * 16 15 14 28 28 H 1.07999 * 124.91470 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 7 1.7094 -6.0320 -1.0614 13 6 1.2704 -7.2092 -0.5812 14 6 0.8231 -8.3943 -1.3974 15 6 2.0044 -9.2878 -1.6749 16 6 2.4187 -10.3033 -0.9113 17 7 3.4805 -10.9345 -1.3704 18 6 3.9847 -10.5083 -2.4790 19 16 3.0789 -9.1831 -3.0675 20 7 1.3038 -7.1371 0.7159 21 8 1.7186 -6.0522 1.0656 22 1 -0.4851 0.8400 -0.0004 23 1 3.1212 -3.7293 -0.8992 24 1 3.1279 -3.7332 0.8807 25 1 0.0676 -8.9522 -0.8440 26 1 0.4004 -8.0474 -2.3403 27 1 1.9243 -10.5833 0.0072 28 1 4.8505 -10.9308 -2.9671 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280947238.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:57 Heat of formation + Delta-G solvation = 108.980213 kcal Electronic energy + Delta-G solvation = -16313.388699 eV Core-core repulsion = 13393.027774 eV Total energy + Delta-G solvation = -2920.360925 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.019 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.32144 -39.85611 -36.08574 -34.00960 -32.59349 -31.98602 -28.60108 -27.92663 -25.65837 -24.99444 -23.33051 -21.46214 -20.31813 -18.41726 -18.02156 -17.76509 -17.02868 -15.77782 -15.13538 -14.93765 -14.69965 -14.31782 -14.16434 -13.92989 -13.65581 -13.11656 -12.97179 -12.77745 -11.98090 -11.43447 -11.42975 -11.19493 -11.12183 -10.96817 -10.77595 -10.30126 -9.88898 -9.56220 -9.46099 -9.21195 -9.19985 -8.58872 -6.77060 -6.38156 -4.13210 0.40194 1.09363 1.31907 1.51526 2.30376 2.58984 2.99675 3.16969 3.18984 3.22330 3.38048 3.77570 4.04525 4.09147 4.15199 4.59324 4.86203 4.99226 4.99586 5.11980 5.21636 5.33992 5.54593 5.67588 5.84509 5.91440 6.09111 6.20393 7.42784 7.45782 8.20169 8.38012 9.07704 10.69728 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.038497 B = 0.003284 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.149481 B = 8524.583619 C = 8817.349891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.925 3.075 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.080 0.920 9 S -0.080 6.080 10 C -0.044 4.044 11 C 0.230 3.770 12 N -0.478 5.478 13 C 0.165 3.835 14 C 0.055 3.945 15 C -0.220 4.220 16 C 0.044 3.956 17 N -0.473 5.473 18 C 0.010 3.990 19 S 0.152 5.848 20 N -0.384 5.384 21 O 0.079 5.921 22 H 0.271 0.729 23 H 0.111 0.889 24 H 0.103 0.897 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.177 0.823 28 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -16.821 -4.892 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.750 3.250 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.675 4.675 8 H 0.098 0.902 9 S 0.145 5.855 10 C -0.193 4.193 11 C 0.010 3.990 12 N -0.212 5.212 13 C -0.109 4.109 14 C 0.014 3.986 15 C -0.342 4.342 16 C -0.108 4.108 17 N -0.186 5.186 18 C -0.287 4.287 19 S 0.405 5.595 20 N -0.094 5.094 21 O 0.021 5.979 22 H 0.081 0.919 23 H 0.129 0.871 24 H 0.121 0.879 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.194 0.806 28 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.840 -17.511 -5.435 18.733 hybrid contribution 1.514 1.186 0.832 2.096 sum 5.354 -16.325 -4.603 17.787 Atomic orbital electron populations 1.69983 1.06027 1.27983 1.46202 1.25027 0.95131 0.99243 0.94101 0.86122 0.79181 0.80640 0.79022 1.19731 1.20731 1.19714 1.22663 0.94841 0.90028 1.59977 0.90192 1.85190 1.05095 0.98229 1.96967 1.21995 1.04462 0.85802 1.06991 1.28213 0.93914 0.96754 0.80093 1.71914 1.18604 1.02096 1.28631 1.25399 1.01361 0.95566 0.88589 1.18130 0.92897 0.87866 0.99749 1.25697 1.04650 1.03635 1.00245 1.21824 0.93997 0.93577 1.01362 1.66363 1.10662 1.29788 1.11817 1.28455 1.04875 0.98858 0.96498 1.84261 1.21703 1.30534 1.23004 1.74558 1.18293 1.01136 1.15367 1.85296 1.58893 1.17937 1.35789 0.91873 0.87064 0.87895 0.86885 0.87140 0.80609 0.78408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.68 13.22 55.49 0.73 -23.94 15 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 15 3 Si 0.92 20.33 29.55 -169.99 -5.02 15.30 15 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 15 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 7 C -0.53 -13.97 9.50 30.94 0.29 -13.67 15 8 H 0.08 1.99 7.80 -52.49 -0.41 1.58 15 9 S -0.08 -1.98 21.42 -107.50 -2.30 -4.28 15 10 C -0.04 -0.83 6.30 36.00 0.23 -0.60 15 11 C 0.23 4.20 7.77 -13.06 -0.10 4.10 15 12 N -0.48 -8.51 11.55 -9.87 -0.11 -8.63 15 13 C 0.16 2.58 7.45 -156.37 -1.17 1.42 15 14 C 0.05 0.62 6.38 -29.04 -0.19 0.43 15 15 C -0.22 -2.47 5.83 -35.92 -0.21 -2.68 15 16 C 0.04 0.51 11.25 -19.19 -0.22 0.29 15 17 N -0.47 -5.63 10.54 -15.75 -0.17 -5.80 15 18 C 0.01 0.10 12.23 51.59 0.63 0.73 15 19 S 0.15 1.50 23.22 -107.50 -2.50 -1.00 15 20 N -0.38 -6.52 12.16 30.90 0.38 -6.15 15 21 O 0.08 1.42 11.31 18.10 0.20 1.63 15 22 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 23 H 0.11 1.99 8.14 -51.92 -0.42 1.57 15 24 H 0.10 1.75 8.14 -51.92 -0.42 1.33 15 25 H 0.11 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.11 1.12 8.14 -51.93 -0.42 0.69 15 27 H 0.18 1.75 8.06 -52.49 -0.42 1.33 15 28 H 0.20 1.17 8.06 -52.49 -0.42 0.75 15 LS Contribution 291.29 15.07 4.39 4.39 Total: -1.00 -31.11 291.29 -7.30 -38.41 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -2.08 Total: -1.87 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.82 Total: -8.06 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.83 Total: -44.51 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.20 Total: 1.63 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -4.80 Total: -5.28 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.11 -7.30 -38.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280947238.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.390 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds