Wall clock time and date at job start Tue Mar 31 2020 05:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47535 * 56.25068 * 3 2 1 5 5 C 1.36936 * 120.00019 * 276.01331 * 4 3 2 6 6 H 1.07997 * 120.00540 * 181.18642 * 5 4 3 7 7 C 1.38819 * 119.99912 * 1.18643 * 5 4 3 8 8 N 1.31619 * 120.00151 * 27.95979 * 7 5 4 9 9 Si 1.86798 * 120.00048 * 207.96131 * 7 5 4 10 10 H 1.48501 * 109.47305 * 84.98554 * 9 7 5 11 11 H 1.48495 * 109.47023 * 204.98817 * 9 7 5 12 12 H 1.48502 * 109.46855 * 324.99104 * 9 7 5 13 13 C 1.46502 * 119.99981 * 96.00906 * 4 3 2 14 14 C 1.50700 * 109.46769 * 270.00434 * 13 4 3 15 15 C 1.38225 * 119.99780 * 259.72683 * 14 13 4 16 16 C 1.38332 * 119.99932 * 179.73081 * 15 14 13 17 17 Cl 1.73597 * 120.00034 * 180.29813 * 16 15 14 18 18 C 1.38375 * 119.99717 * 0.56593 * 16 15 14 19 19 C 1.38172 * 120.00460 * 359.70642 * 18 16 15 20 20 C 1.38330 * 120.00516 * 80.00230 * 14 13 4 21 21 Cl 1.73601 * 119.99452 * 359.97438 * 20 14 13 22 22 H 4.40639 * 5.51394 * 180.02562 * 4 1 2 23 23 H 1.09006 * 109.47014 * 296.25041 * 3 2 1 24 24 H 1.09002 * 109.47015 * 176.25546 * 3 2 1 25 25 H 0.96998 * 120.00232 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.46940 * 29.99987 * 13 4 3 27 27 H 1.08994 * 109.46762 * 150.00585 * 13 4 3 28 28 H 1.08000 * 120.00031 * 0.02562 * 15 14 13 29 29 H 1.08007 * 120.00016 * 179.69038 * 18 16 15 30 30 H 1.07996 * 120.00411 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.7664 -1.1484 5 6 3.2465 -2.1287 -1.0644 6 1 3.6249 -2.6923 -1.9043 7 6 2.8734 -2.7851 0.1005 8 7 1.9482 -2.2672 0.8803 9 14 3.6844 -4.4035 0.5613 10 1 4.9510 -4.1333 1.2879 11 1 2.7706 -5.1846 1.4330 12 1 3.9766 -5.1792 -0.6709 13 6 3.5039 -0.0762 -2.3868 14 6 2.2983 0.0219 -3.2857 15 6 2.1452 -0.8640 -4.3356 16 6 1.0358 -0.7775 -5.1573 17 17 0.8396 -1.8950 -6.4713 18 6 0.0852 0.2032 -4.9353 19 6 0.2410 1.0923 -3.8892 20 6 1.3477 1.0019 -3.0635 21 17 1.5433 2.1186 -1.7487 22 1 -1.0498 0.0000 -0.0003 23 1 3.0095 -0.4537 0.9217 24 1 3.0089 1.0263 -0.0671 25 1 1.6873 -2.7261 1.6941 26 1 3.8638 0.9253 -2.1511 27 1 4.2905 -0.6352 -2.8936 28 1 2.8894 -1.6267 -4.5116 29 1 -0.7786 0.2739 -5.5799 30 1 -0.5007 1.8579 -3.7162 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281380011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:51 Heat of formation + Delta-G solvation = 89.885846 kcal Electronic energy + Delta-G solvation = -17770.256330 eV Core-core repulsion = 14812.687247 eV Total energy + Delta-G solvation = -2957.569083 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.023 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.47857 -38.01797 -37.43558 -37.04592 -33.95167 -33.24039 -31.79171 -31.29226 -28.01344 -27.44864 -24.04483 -23.66299 -22.04617 -19.38334 -18.14919 -18.04660 -17.03285 -16.78514 -16.62032 -15.67741 -15.24175 -15.22097 -14.74910 -14.47787 -13.96493 -13.73790 -13.43950 -13.22766 -12.99349 -12.84927 -12.60754 -12.30613 -12.18349 -11.92063 -11.89865 -11.77678 -11.40035 -10.64048 -10.57153 -10.07491 -9.86861 -9.41368 -9.05107 -7.81821 -5.12781 0.06124 0.27627 1.06723 1.35826 1.49019 1.53069 1.58160 2.39161 2.61328 2.66104 2.81729 3.26488 3.77657 3.85441 3.94597 4.18159 4.27161 4.31886 4.49006 4.66080 4.88981 4.96001 4.97168 5.08495 5.20720 5.42449 5.46540 5.66547 5.69922 5.80322 6.24339 7.10882 7.58315 7.84155 8.23647 9.17471 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.007853 C = 0.005876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.783109 B = 3564.652278 C = 4763.786191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.088 4.088 3 C 0.270 3.730 4 N -0.587 5.587 5 C -0.264 4.264 6 H 0.081 0.919 7 C -0.041 4.041 8 N -0.904 5.904 9 Si 0.951 3.049 10 H -0.286 1.286 11 H -0.306 1.306 12 H -0.275 1.275 13 C 0.176 3.824 14 C -0.085 4.085 15 C -0.100 4.100 16 C -0.039 4.039 17 Cl -0.067 7.067 18 C -0.109 4.109 19 C -0.104 4.104 20 C -0.027 4.027 21 Cl -0.060 7.060 22 H 0.204 0.796 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.245 0.755 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.136 0.864 29 H 0.162 0.838 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 7.652 -10.866 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.336 4.336 2 C -0.091 4.091 3 C 0.146 3.854 4 N -0.306 5.306 5 C -0.393 4.393 6 H 0.099 0.901 7 C -0.238 4.238 8 N -0.549 5.549 9 Si 0.781 3.219 10 H -0.213 1.213 11 H -0.233 1.233 12 H -0.200 1.200 13 C 0.050 3.950 14 C -0.090 4.090 15 C -0.120 4.120 16 C -0.066 4.066 17 Cl -0.038 7.038 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.055 4.055 21 Cl -0.031 7.031 22 H 0.221 0.779 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.154 0.846 29 H 0.180 0.820 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.424 7.564 -10.695 13.177 hybrid contribution -0.255 -1.268 0.581 1.418 sum -1.679 6.296 -10.114 12.031 Atomic orbital electron populations 1.24528 0.95939 1.08141 1.05017 1.24063 0.95328 0.93619 0.96123 1.18025 0.83311 0.92983 0.91119 1.44563 1.73861 1.03294 1.08856 1.19454 1.36780 0.83627 0.99404 0.90147 1.25357 0.98397 1.00976 0.99032 1.70367 1.28018 1.41102 1.15384 0.85527 0.78183 0.80455 0.77772 1.21258 1.23306 1.20015 1.20167 0.91888 0.97863 0.85060 1.20979 0.99917 0.93066 0.95004 1.20950 0.97793 0.99117 0.94127 1.21056 0.97520 0.94968 0.93049 1.98347 1.97270 1.61428 1.46717 1.21136 0.99268 0.93783 0.98576 1.21186 0.96521 1.00415 0.94132 1.20989 0.97531 0.94823 0.92166 1.98347 1.97109 1.60641 1.47027 0.77893 0.91875 0.92037 0.94466 0.90596 0.90690 0.84632 0.82000 0.82546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.32 -14.39 18.79 74.32 1.40 -12.99 16 2 C -0.09 -4.18 8.23 31.12 0.26 -3.93 16 3 C 0.27 12.52 4.82 84.57 0.41 12.93 16 4 N -0.59 -26.99 2.49 -716.92 -1.79 -28.78 16 5 C -0.26 -13.50 9.66 84.04 0.81 -12.68 16 6 H 0.08 4.02 7.97 -2.91 -0.02 4.00 16 7 C -0.04 -2.20 4.94 84.86 0.42 -1.78 16 8 N -0.90 -50.77 8.95 21.65 0.19 -50.58 16 9 Si 0.95 43.85 29.64 68.60 2.03 45.88 16 10 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.31 -14.58 7.11 99.48 0.71 -13.87 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 C 0.18 6.54 5.40 85.63 0.46 7.00 16 14 C -0.09 -3.02 5.47 -19.85 -0.11 -3.12 16 15 C -0.10 -3.31 9.45 22.29 0.21 -3.10 16 16 C -0.04 -1.15 6.32 22.32 0.14 -1.01 16 17 Cl -0.07 -1.72 28.96 -2.72 -0.08 -1.80 16 18 C -0.11 -2.84 9.83 22.29 0.22 -2.62 16 19 C -0.10 -2.90 9.83 22.29 0.22 -2.68 16 20 C -0.03 -0.91 5.90 22.32 0.13 -0.78 16 21 Cl -0.06 -1.98 21.92 -2.72 -0.06 -2.04 16 22 H 0.20 7.97 7.80 -4.43 -0.03 7.94 16 23 H 0.06 3.30 6.32 -2.38 -0.02 3.29 16 24 H 0.06 2.51 6.47 -2.39 -0.02 2.50 16 25 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 26 H 0.08 2.55 7.07 -2.39 -0.02 2.54 16 27 H 0.07 2.60 7.90 -2.39 -0.02 2.58 16 28 H 0.14 4.33 8.03 -2.91 -0.02 4.31 16 29 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 30 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -58.94 287.90 6.02 -52.91 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.16 Total: 9.16 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 4.57 Total: -24.76 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -1.59 Total: -79.36 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 17 Polarization: -3.70 SS G_CDS: -0.14 Total: -3.84 kcal Total: -58.94 6.02 -52.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281380011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.799 kcal (2) G-P(sol) polarization free energy of solvation -58.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds